Gene Page:BCL2L11
Summary?
基因 | 10018 |
象征 | BCL2L11 |
Synonyms | bam | bim | bod |
Description | Bcl2像11 |
Reference | MIM:603827|HGNC:HGNC:994|Ensembl:ENSG00000153094|HPRD:04828|Vega:OTTHUMG00000131256 |
基因类型 | 蛋白质编码 |
Map location | 2Q13 |
Pascal p-value | 0.029 |
胎儿β | 0.668 |
主持人 | Cerebellar Hemisphere 小脑 |
Gene in Data Sources
基因集名称 | Method of gene set | Description | 信息 |
---|---|---|---|
CV:PGCnp | Genome-wide Association Study | GWAS | |
PMID:cooccur | High-throughput literature-search | PubMed中的系统搜索与SCZ关键字共发生的基因。总共包括3027个基因。 | |
GSMA_I | Genome scan meta-analysis | PSR:0.0004 | |
GSMA_IIA | Genome scan meta-analysis (All samples) | Psr: 0.00755 | |
Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias | 点击显示详细信息 |
Section I. Genetics and epigenetics annotation
第二节。转录组注释
一般基因表达(GTEX)
![Not available](http://www.tjghsg.com/bioinfo/SZGR/GeneImg/BCL2L11_DE_GTEx.png)
Devlopment期间的基因表达(BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
时间变化的基因表达(brainspan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1:胎儿(13-26个概念后周),ST2:婴儿早期至童年(4个月至11年)和ST3:青春期至成年期(13-23年)
所示的栏表示表达分布的较低25%和上层25%。
大脑区域的顶级共表达基因
前10个积极共表达的基因 | ||
Gene | Pearson's Correlation | 斯皮尔曼的相关性 |
IQGAP1 | 0.81 | 0.76 |
WWC3 | 0.81 | 0.81 |
C1orf198 | 0.81 | 0.83 |
NDE1 | 0.80 | 0.75 |
WDFY2 | 0.80 | 0.79 |
phlpp1 | 0.79 | 0.78 |
flnb | 0.79 | 0.83 |
sall1 | 0.79 | 0.80 |
CTNNA1 | 0.79 | 0.76 |
FUBP3 | 0.78 | 0.76 |
Top 10 negatively co-expressed genes | ||
Gene | Pearson's Correlation | 斯皮尔曼的相关性 |
TTC9B | -0.43 | -0.46 |
Sycp3 | -0.42 | -0.39 |
ST20 | -0.39 | -0.43 |
AC044839.2 | -0.39 | -0.32 |
USMG5 | -0.39 | -0.45 |
UQCR | -0.39 | -0.41 |
UQCRQ | -0.39 | -0.41 |
ZFAND2A | -0.39 | -0.41 |
CARD16 | -0.38 | -0.38 |
Rergl | -0.38 | -0.36 |
第三节。基因本体论注释
分子功能 | 去学期 | 证据 | 神经关键字 | PubMed ID |
---|---|---|---|---|
去:0005515 | 蛋白质结合 | IPI | 10198631|15694340|16282323 |17692808 |
|
GO:0008017 | 微管结合 | IEA | - | |
生物过程 | 去学期 | 证据 | 神经关键字 | PubMed ID |
GO:0007160 | cell-matrix adhesion | IEA | - | |
GO:0006917 | 诱导凋亡 | TAS | 10381623 | |
去:0008633 | 促凋亡基因产物的激活 | 经验 | 14764673 | |
GO:0030879 | 乳腺发育 | IEA | - | |
GO:0035148 | lumen formation | IEA | - | |
去:0046620 | regulation of organ growth | IEA | - | |
GO:0048563 | 胚胎后器官形态发生 | IEA | - | |
Cellular component | 去学期 | 证据 | 神经关键字 | PubMed ID |
GO:0005829 | 细胞质 | 经验 | 12591950 | |
去:0005624 | membrane fraction | TAS | 9430630 | |
去:0005741 | 线粒体外膜 | 经验 | 10198631 | |
去:0005886 | plasma membrane | 经验 | 12591950 |
Section V. Pathway annotation
第六节。microRNA注释
mirna家族 | Target position | miRNA ID | mirna seq | ||
---|---|---|---|---|---|
UTR开始 | UTR结束 | 匹配方法 | |||
miR-10 | 4111 | 4118 | 1A,M8 | hsa-miR-10a | UACCCUGUAGAUCCGAAUUUGUG |
hsa-miR-10b | uacccuguagaaccgaauuugu | ||||
mir-101 | 2255 | 2262 | 1A,M8 | hsa-miR-101 | uacaguacugauaacugaag |
mir-124.1 | 465 | 471 | M8 | HSA-MIR-124a | UUAAGGCACGCGGUGAAUGCCA |
miR-124/506 | 465 | 471 | 1a | hsa-miR-506 | UAAGGCACCCUUCUGAGUAGA |
HSA-MIR-124brain | UAAGGCACGCGGUGAAUGCC | ||||
hsa-miR-506 | UAAGGCACCCUUCUGAGUAGA | ||||
HSA-MIR-124brain | UAAGGCACGCGGUGAAUGCC | ||||
mir-130/301 | 4093 | 4099 | M8 | hsa-miR-130abrain | cagugcaauguaaaaggggau |
hsa-miR-301 | cagugcaauaugucaaagc | ||||
hsa-miR-130bbrain | Cagugcaaugaagggauggau | ||||
hsa-miR-454-3p | UAGUGCAAUAUUGCUUAUAGGGUUU | ||||
miR-144 | 2256 | 2262 | 1a | HSA-MIR-144 | UACAGUAUAGAUGAUGUACUAG |
mir-148/152 | 4094 | 4101 | 1A,M8 | hsa-miR-148a | ucagugcacuacaacuuugu |
HSA-MIR-152brain | UCAGUGCAUGACACUUGGG | ||||
hsa-miR-148b | ucagugcaucacacaacuuugu | ||||
hsa-miR-148a | ucagugcacuacaacuuugu | ||||
HSA-MIR-152brain | UCAGUGCAUGACACUUGGG | ||||
hsa-miR-148b | ucagugcaucacacaacuuugu | ||||
miR-149 | 444 | 450 | M8 | HSA-MIR-149brain | Ucuggcuccucuucuucacuccc |
miR-17-5p/20/93.mr/106/519.d | 1999 | 2006 | 1A,M8 | hsa-miR-17-5p | caaagugcuuacugcagguagu |
hsa-miR-20abrain | UAAAGUGCUUAUAGUGCAGGUAG | ||||
hsa-miR-106a | AAAAGUGCUUACAGUGCAGGUAGC | ||||
hsa-miR-106bSZ | UAAAGUGCUGACAGUGCAGAU | ||||
hsa-miR-20bSZ | CAAAGUGCUCAUAGUGCAGGUAG | ||||
HSA-MIR-519D | caaagugccucccuuuagugugu | ||||
miR-181 | 208 | 215 | 1A,M8 | HSA-MIR-181Abrain | AACAUUCAACGCUGUCGGUGAGU |
HSA-MIR-181BSZ | AACAUUCAUUGCUGUCGGUGGG | ||||
HSA-MIR-181Cbrain | AACAUUCAACCUGUCGGUGAGU | ||||
HSA-MIR-181Dbrain | aacauucauuguugucggggguggguu | ||||
miR-19 | 4092 | 4098 | M8 | HSA-MIR-19A | ugugcaaauaugauaugaaaacuga |
HSA-MIR-19B | UGUGCAAAUCCAUGCAAAACUGA | ||||
mir-214 | 3734 | 3741 | 1A,M8 | hsa-miR-214brain | ACAGCAGGCACAGACAGGCAG |
mir-221/222 | 4052 | 4059 | 1A,M8 | hsa-miR-221brain | agcuacauugucugugggggguc |
hsa-miR-222brain | agcuacaucuggcuacugggucuc | ||||
miR-24 | 2678 | 2685 | 1A,M8 | hsa-miR-24SZ | uggcucucagagcaggaagag |
hsa-miR-24SZ | uggcucucagagcaggaagag | ||||
mir-25/32/92/363/367 | 4134 | 4141 | 1A,M8 | hsa-miR-25brain | Cauugcacuugucucggucuga |
hsa-miR-32 | uauugcacauacuaaguugc | ||||
HSA-MIR-92 | uauugcacuugucccgcgcug | ||||
HSA-MIR-367 | Aauugcacuuuagcaaugga | ||||
HSA-MIR-92BSZ | uauugcacucgucccgcgcuc | ||||
hsa-miR-25brain | Cauugcacuugucucggucuga | ||||
hsa-miR-32 | uauugcacauacuaaguugc | ||||
HSA-MIR-92 | uauugcacuugucccgcgcug | ||||
HSA-MIR-367 | Aauugcacuuuagcaaugga | ||||
HSA-MIR-92BSZ | uauugcacucgucccgcgcuc | ||||
mir-30-5p | 288 | 295 | 1A,M8 | HSA-MIR-30A-5P | uguaaaacauccuccugagaag |
hsa-miR-30cbrain | UGUAAACAUCCUACACUCUCAGC | ||||
hsa-miR-30dSZ | UGUAAACAUCCCCGACUGGAAG | ||||
hsa-miR-30bSZ | uguaaacauccuaccucucagcu | ||||
hsa-miR-30e-5p | UGUAAACAUCCUUGACUGGA | ||||
mir-339 | 4110 | 4116 | M8 | hsa-miR-339 | ucccuccuccaggagcuca |
miR-376 | 2184 | 2191 | 1A,M8 | HSA-MIR-376A | aucauagaaaaauccacgu |
HSA-MIR-376B | AUCAUAGAGGAAAAUCCAUGUU | ||||
miR-381 | 2859 | 2865 | 1a | HSA-MIR-381 | uauacaagggcaagcucucugu |
miR-496 | 211 | 217 | 1a | HSA-MIR-496 | Auuacauggccaaucuc |
mir-9 | 1927 | 1934 | 1A,M8 | hsa-miR-9SZ | UCUUUGGUUAUCUAGCUGUAUGA |
mir-93.hd/291-3p/294/295/302/372/373/520 | 1998 | 2004 | M8 | HSA-MIR-93brain | aaagugcuguucgugcagguag |
hsa-miR-302a | uaagugcuugcauguuuguga | ||||
hsa-miR-302b | UAAGUGCUUCCAUGUUUUAGUAG | ||||
hsa-miR-302c | uaagugcuuccauguucagugg | ||||
hsa-miR-302d | UAAGUGCUUCCAUGUUUGAGUGU | ||||
HSA-MIR-372 | AAAGUGCUGCGACAUUUGAGCGU | ||||
HSA-MIR-373 | Gaagugcuucgauuuggggugu | ||||
HSA-MIR-520E | Aaagugcuuuuuugaggg | ||||
hsa-miR-520a | AAAGUGCUUCCCUUUGGACUGU | ||||
hsa-miR-520b | aaagugcuuuuuuagaggg | ||||
hsa-miR-520c | aaagugcuuuuuuaggggug | ||||
hsa-miR-520d | aaaguguuugugggguggguu |