Gene Page:PRDM7

Summary?
GeneID 11105
Symbol PRDM7
Synonyms PFM4|ZNF910
Description PR domain 7
Reference MIM: 609759|HGNC:HGNC:9351|HPRD:17903|
Gene type protein-coding
Map location 16q24.3
Pascal p-value 0.003
Sherlock p-value 0.243
支持 Chromatin Remodeling Genes

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:PGCnp Genome-wide Association Study GWAS

Section I. Genetics and epigenetics annotation


Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

Top co-expressed genes in brain regions

Top 10 positively co-expressed genes
Gene Pearson's Correlation Spearman's Correlation
ZNF821 0.94 0.92
DTD1 0.94 0.92
IP6K2 0.93 0.93
PRMT2 0.93 0.91
TRNAU1AP 0.93 0.91
RPAIN 0.93 0.92
USF1 0.93 0.92
TTLL1 0.92 0.90
ING4 0.92 0.93
ZNF239 0.91 0.93
Top 10 negatively co-expressed genes
Gene Pearson's Correlation Spearman's Correlation
AF347015.27 -0.79 -0.87
AIFM3 -0.78 -0.81
HLA-F -0.78 -0.79
AF347015.33 -0.78 -0.86
MT-CO2 -0.77 -0.85
AF347015.31 -0.77 -0.85
MT-CYB -0.77 -0.87
HEPN1 -0.76 -0.81
AF347015.8 -0.75 -0.87
AF347015.15 -0.75 -0.87

Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
ROYLANCE BREAST CANCER 16Q COPY NUMBER UP 63 44 All SZGR 2.0 genes in this pathway
NIKOLSKY BREAST CANCER 16Q24 AMPLICON 53 38 All SZGR 2.0 genes in this pathway