基因Page:chrna3
Summary?
基因ID | 1136 |
象征 | chrna3 |
同义词 | lncr2 | nachra3 | paod2 |
描述 | cholinergic receptor nicotinic alpha 3 subunit |
参考 | MIM:118503|HGNC:HGNC:1957|Ensembl:ENSG00000080644|HPRD:07511|Vega:Otthumg00000143863 |
基因类型 | protein-coding |
Map location | 15Q24 |
Pascal P值 | 4.988e-9 |
eGene | Caudate basal ganglia 伏隔核基底神经节 梭子基底神经节 Myers' cis & trans |
基因in Data Sources
基因集名称 | 基因组方法 | 描述 | Info |
---|---|---|---|
简历:Gwascat | Genome-wide Association Studies | This data set includes 560 SNPs associated with schizophrenia. A total of 486 genes were mapped to these SNPs within 50kb. | |
CV:PGC128 | Genome-wide Association Study | A multi-stage schizophrenia GWAS of up to 36,989 cases and 113,075 controls. Reported by the Schizophrenia Working Group of PGC. 128 independent associations spanning 108 loci | |
简历:PGCNP | Genome-wide Association Study | GWAS | |
PMID:cooccur | 高通量文献搜索 | PubMed中的系统搜索与SCZ关键字共发生的基因。总共包括3027个基因。 | |
文学 | 高通量文献搜索 | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenic,schizophrenias | Click to show details |
GO_Annotation | 将与神经相关的关键字映射到基因本体论注释 | Hits with neuro-related keywords: 16 |
Section I. Genetics and epigenetics annotation
CV:PGC128
SNP ID | 染色体 | 位置 | 等位基因 | P | Function | 基因 | 向上/向下距离 |
---|---|---|---|---|---|---|---|
RS8042374 | CHR15 | 78908032 | AG | 1.865e-12 | 内含子 | chrna3 |
eQTL annotation
SNP ID | 染色体 | 位置 | eGene | 基因Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
---|---|---|---|---|---|---|---|---|
rs17130103 | CHR1 | 88150541 | chrna3 | 1136 | 0.11 | 反式 | ||
rs16823145 | CHR1 | 184397914 | chrna3 | 1136 | 0.04 | 反式 | ||
RS6666913 | CHR1 | 237092144 | chrna3 | 1136 | 0.13 | 反式 | ||
RS7596511 | CHR2 | 120010898 | chrna3 | 1136 | 0.01 | 反式 | ||
rs2324466 | CHR3 | 76100753 | chrna3 | 1136 | 0.15 | 反式 | ||
rs17013713 | CHR3 | 76105150 | chrna3 | 1136 | 0.05 | 反式 | ||
RS17013722 | CHR3 | 76107656 | chrna3 | 1136 | 0.15 | 反式 | ||
RS17013724 | CHR3 | 76107684 | chrna3 | 1136 | 0.15 | 反式 | ||
rs16831155 | CHR3 | 173574763 | chrna3 | 1136 | 0.15 | 反式 | ||
rs10212684 | CHR4 | 102822506 | chrna3 | 1136 | 0.1 | 反式 | ||
rs9986296 | CHR5 | 3199318 | chrna3 | 1136 | 0.12 | 反式 | ||
RS348150 | CHR8 | 73371619 | chrna3 | 1136 | 0.1 | 反式 | ||
RS16938220 | CHR8 | 73377940 | chrna3 | 1136 | 0.07 | 反式 | ||
RS17233214 | CHR11 | 21367388 | chrna3 | 1136 | 0.13 | 反式 | ||
RS2069410 | CHR12 | 56364644 | chrna3 | 1136 | 0.01 | 反式 | ||
RS17834315 | CHR13 | 37991091 | chrna3 | 1136 | 0.06 | 反式 | ||
RS10498433 | CHR14 | 52289530 | chrna3 | 1136 | 0.01 | 反式 | ||
RS12900783 | 15 | 78815523 | chrna3 | ENSG00000080644.11 | 1.393E-6 | 0 | 98114 | gtex_brain_putamen_basal |
RS12594391 | 15 | 78816240 | chrna3 | ENSG00000080644.11 | 1.354E-6 | 0 | 97397 | gtex_brain_putamen_basal |
RS12910969 | 15 | 78816980 | chrna3 | ENSG00000080644.11 | 1.323E-6 | 0 | 96657 | gtex_brain_putamen_basal |
RS12910726 | 15 | 78817034 | chrna3 | ENSG00000080644.11 | 1.318E-6 | 0 | 96603 | gtex_brain_putamen_basal |
rs1504545 | 15 | 78818471 | chrna3 | ENSG00000080644.11 | 1.259E-6 | 0 | 95166 | gtex_brain_putamen_basal |
RS952215 | 15 | 78819153 | chrna3 | ENSG00000080644.11 | 1.231E-6 | 0 | 94484 | gtex_brain_putamen_basal |
RS952216 | 15 | 78819202 | chrna3 | ENSG00000080644.11 | 1.229E-6 | 0 | 94435 | gtex_brain_putamen_basal |
rs12902493 | 15 | 78819275 | chrna3 | ENSG00000080644.11 | 1.226E-6 | 0 | 94362 | gtex_brain_putamen_basal |
rs12903129 | 15 | 78819606 | chrna3 | ENSG00000080644.11 | 1.214E-6 | 0 | 94031 | gtex_brain_putamen_basal |
rs11636131 | 15 | 78821606 | chrna3 | ENSG00000080644.11 | 1.15E-6 | 0 | 92031 | gtex_brain_putamen_basal |
rs11632604 | 15 | 78821914 | chrna3 | ENSG00000080644.11 | 1.141E-6 | 0 | 91723 | gtex_brain_putamen_basal |
rs12910289 | 15 | 78822065 | chrna3 | ENSG00000080644.11 | 1.044e-6 | 0 | 91572 | gtex_brain_putamen_basal |
RS35773115 | 15 | 78822189 | chrna3 | ENSG00000080644.11 | 2.036E-6 | 0 | 91448 | gtex_brain_putamen_basal |
RS12910100 | 15 | 78822667 | chrna3 | ENSG00000080644.11 | 1.13E-6 | 0 | 90970 | gtex_brain_putamen_basal |
RS12915428 | 15 | 78823368 | chrna3 | ENSG00000080644.11 | 1.124E-6 | 0 | 90269 | gtex_brain_putamen_basal |
rs12900612 | 15 | 78823993 | chrna3 | ENSG00000080644.11 | 1.094E-6 | 0 | 89644 | gtex_brain_putamen_basal |
RS1847530 | 15 | 78824031 | chrna3 | ENSG00000080644.11 | 1.119E-6 | 0 | 89606 | gtex_brain_putamen_basal |
rs1504546 | 15 | 78824235 | chrna3 | ENSG00000080644.11 | 1.116E-6 | 0 | 89402 | gtex_brain_putamen_basal |
RS145042403 | 15 | 78824287 | chrna3 | ENSG00000080644.11 | 1.116E-6 | 0 | 89350 | gtex_brain_putamen_basal |
RS11630349 | 15 | 78824608 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 89029 | gtex_brain_putamen_basal |
RS12906284 | 15 | 78825105 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 88532 | gtex_brain_putamen_basal |
rs12907425 | 15 | 78825149 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 88488 | gtex_brain_putamen_basal |
rs12906846 | 15 | 78825295 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 88342 | gtex_brain_putamen_basal |
RS12907169 | 15 | 78825498 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 88139 | gtex_brain_putamen_basal |
RS12906951 | 15 | 78825562 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 88075 | gtex_brain_putamen_basal |
RS56007453 | 15 | 78826239 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 87398 | gtex_brain_putamen_basal |
RS17407257 | 15 | 78826249 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 87388 | gtex_brain_putamen_basal |
RS12916999 | 15 | 78826912 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 86725 | gtex_brain_putamen_basal |
rs12915366 | 15 | 78831753 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 81884 | gtex_brain_putamen_basal |
RS12915652 | 15 | 78831928 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 81709 | gtex_brain_putamen_basal |
rs12916483 | 15 | 78832397 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 81240 | gtex_brain_putamen_basal |
RS3813572 | 15 | 78832588 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 81049 | gtex_brain_putamen_basal |
RS3813571 | 15 | 78832792 | chrna3 | ENSG00000080644.11 | 1.115E-6 | 0 | 80845 | gtex_brain_putamen_basal |
rs55690619 | 15 | 78833612 | chrna3 | ENSG00000080644.11 | 1.28E-7 | 0 | 80025 | gtex_brain_putamen_basal |
rs4886571 | 15 | 78833758 | chrna3 | ENSG00000080644.11 | 1.28E-7 | 0 | 79879 | gtex_brain_putamen_basal |
rs4243083 | 15 | 78833830 | chrna3 | ENSG00000080644.11 | 1.324E-7 | 0 | 79807 | gtex_brain_putamen_basal |
rs2292117 | 15 | 78834689 | chrna3 | ENSG00000080644.11 | 1.28E-7 | 0 | 78948 | gtex_brain_putamen_basal |
rs11858230 | 15 | 78835552 | chrna3 | ENSG00000080644.11 | 1.28E-7 | 0 | 78085 | gtex_brain_putamen_basal |
RS8025429 | 15 | 78836362 | chrna3 | ENSG00000080644.11 | 1.28E-7 | 0 | 77275 | gtex_brain_putamen_basal |
rs67437837 | 15 | 78836631 | chrna3 | ENSG00000080644.11 | 1.308E-7 | 0 | 77006 | gtex_brain_putamen_basal |
rs76712448 | 15 | 78836719 | chrna3 | ENSG00000080644.11 | 3.5E-7 | 0 | 76918 | gtex_brain_putamen_basal |
RS75754317 | 15 | 78836721 | chrna3 | ENSG00000080644.11 | 3.424e-7 | 0 | 76916 | gtex_brain_putamen_basal |
RS78406067 | 15 | 78836723 | chrna3 | ENSG00000080644.11 | 3.424e-7 | 0 | 76914 | gtex_brain_putamen_basal |
RS77434238 | 15 | 78836726 | chrna3 | ENSG00000080644.11 | 3.532E-7 | 0 | 76911 | gtex_brain_putamen_basal |
rs28392948 | 15 | 78836866 | chrna3 | ENSG00000080644.11 | 1.28E-7 | 0 | 76771 | gtex_brain_putamen_basal |
rs4886572 | 15 | 78837452 | chrna3 | ENSG00000080644.11 | 1.28E-7 | 0 | 76185 | gtex_brain_putamen_basal |
rs4887062 | 15 | 78837801 | chrna3 | ENSG00000080644.11 | 1.28E-7 | 0 | 75836 | gtex_brain_putamen_basal |
RS2869544 | 15 | 78839400 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 74237 | gtex_brain_putamen_basal |
rs4887063 | 15 | 78839715 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 73922 | gtex_brain_putamen_basal |
RS8053 | 15 | 78841220 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 72417 | gtex_brain_putamen_basal |
RS1979907 | 15 | 78842239 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 71398 | gtex_brain_putamen_basal |
RS1979906 | 15 | 78842289 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 71348 | gtex_brain_putamen_basal |
RS1979905 | 15 | 78842374 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 71263 | gtex_brain_putamen_basal |
rs397760194 | 15 | 78842835 | chrna3 | ENSG00000080644.11 | 1.638E-8 | 0 | 70802 | gtex_brain_putamen_basal |
rs4887064 | 15 | 78842847 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 70790 | gtex_brain_putamen_basal |
rs12907966 | 15 | 78843051 | chrna3 | ENSG00000080644.11 | 1.346E-6 | 0 | 70586 | gtex_brain_putamen_basal |
rs1504548 | 15 | 78843246 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 70391 | gtex_brain_putamen_basal |
RS1979908 | 15 | 78843564 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 70073 | gtex_brain_putamen_basal |
rs880395 | 15 | 78844356 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 69281 | gtex_brain_putamen_basal |
rs905740 | 15 | 78844386 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 69251 | gtex_brain_putamen_basal |
RS7164030 | 15 | 78844661 | chrna3 | ENSG00000080644.11 | 6.625E-8 | 0 | 68976 | gtex_brain_putamen_basal |
RS4275821 | 15 | 78849541 | chrna3 | ENSG00000080644.11 | 2.143E-11 | 0 | 64096 | gtex_brain_putamen_basal |
RS7173512 | 15 | 78849914 | chrna3 | ENSG00000080644.11 | 2.11e-11 | 0 | 63723 | gtex_brain_putamen_basal |
rs3829787 | 15 | 78856266 | chrna3 | ENSG00000080644.11 | 2.409E-10 | 0 | 57371 | gtex_brain_putamen_basal |
rs871058 | 15 | 78858491 | chrna3 | ENSG00000080644.11 | 4.928e-8 | 0 | 55146 | gtex_brain_putamen_basal |
rs57945453 | 15 | 78862845 | chrna3 | ENSG00000080644.11 | 2.018E-10 | 0 | 50792 | gtex_brain_putamen_basal |
rs588765 | 15 | 78865425 | chrna3 | ENSG00000080644.11 | 4.202E-8 | 0 | 48212 | gtex_brain_putamen_basal |
RS61012457 | 15 | 78865694 | chrna3 | ENSG00000080644.11 | 2.106E-10 | 0 | 47943 | gtex_brain_putamen_basal |
rs6495306 | 15 | 78865893 | chrna3 | ENSG00000080644.11 | 4.18E-8 | 0 | 47744 | gtex_brain_putamen_basal |
RS2456019 | 15 | 78868489 | chrna3 | ENSG00000080644.11 | 6.291E-12 | 0 | 45148 | gtex_brain_putamen_basal |
rs601079 | 15 | 78869579 | chrna3 | ENSG00000080644.11 | 2.16e-7 | 0 | 44058 | gtex_brain_putamen_basal |
rs495956 | 15 | 78869930 | chrna3 | ENSG00000080644.11 | 1.084E-10 | 0 | 43707 | gtex_brain_putamen_basal |
rs495090 | 15 | 78870003 | chrna3 | ENSG00000080644.11 | 1.087E-10 | 0 | 43634 | gtex_brain_putamen_basal |
RS471889 | 15 | 78870235 | chrna3 | ENSG00000080644.11 | 1.09E-10 | 0 | 43402 | gtex_brain_putamen_basal |
RS680244 | 15 | 78871288 | chrna3 | ENSG00000080644.11 | 1.632E-7 | 0 | 42349 | gtex_brain_putamen_basal |
rs10709956 | 15 | 78872834 | chrna3 | ENSG00000080644.11 | 1.763E-7 | 0 | 40803 | gtex_brain_putamen_basal |
RS621849 | 15 | 78872861 | chrna3 | ENSG00000080644.11 | 2.164E-7 | 0 | 40776 | gtex_brain_putamen_basal |
rs692780 | 15 | 78876505 | chrna3 | ENSG00000080644.11 | 6.649e-12 | 0 | 37132 | gtex_brain_putamen_basal |
rs11637635 | 15 | 78877150 | chrna3 | ENSG00000080644.11 | 6.745e-12 | 0 | 36487 | gtex_brain_putamen_basal |
rs481134 | 15 | 78877563 | chrna3 | ENSG00000080644.11 | 4.276E-8 | 0 | 36074 | gtex_brain_putamen_basal |
RS5813927 | 15 | 78878100 | chrna3 | ENSG00000080644.11 | 4.178E-8 | 0 | 35537 | gtex_brain_putamen_basal |
rs555018 | 15 | 78879242 | chrna3 | ENSG00000080644.11 | 2.913E-8 | 0 | 34395 | gtex_brain_putamen_basal |
rs647041 | 15 | 78880481 | chrna3 | ENSG00000080644.11 | 1.319E-8 | 0 | 33156 | gtex_brain_putamen_basal |
rs17408276 | 15 | 78881618 | chrna3 | ENSG00000080644.11 | 2.146E-10 | 0 | 32019 | gtex_brain_putamen_basal |
rs584135 | 15 | 78883628 | chrna3 | ENSG00000080644.11 | 2.061E-12 | 0 | 30009 | gtex_brain_putamen_basal |
rs514743 | 15 | 78884227 | chrna3 | ENSG00000080644.11 | 1.722e-12 | 0 | 29410 | gtex_brain_putamen_basal |
rs615470 | 15 | 78885988 | chrna3 | ENSG00000080644.11 | 8.884E-12 | 0 | 27649 | gtex_brain_putamen_basal |
RS660652 | 15 | 78887832 | chrna3 | ENSG00000080644.11 | 1.718e-12 | 0 | 25805 | gtex_brain_putamen_basal |
rs472054 | 15 | 78887994 | chrna3 | ENSG00000080644.11 | 1.718e-12 | 0 | 25643 | gtex_brain_putamen_basal |
RS398057851 | 15 | 78889782 | chrna3 | ENSG00000080644.11 | 2.934E-8 | 0 | 23855 | gtex_brain_putamen_basal |
rs6495307 | 15 | 78890321 | chrna3 | ENSG00000080644.11 | 2.934E-8 | 0 | 23316 | gtex_brain_putamen_basal |
RS12911602 | 15 | 78891449 | chrna3 | ENSG00000080644.11 | 2.934E-8 | 0 | 22188 | gtex_brain_putamen_basal |
rs62010327 | 15 | 78892784 | chrna3 | ENSG00000080644.11 | 6.853E-10 | 0 | 20853 | gtex_brain_putamen_basal |
rs12901300 | 15 | 78892952 | chrna3 | ENSG00000080644.11 | 2.934E-8 | 0 | 20685 | gtex_brain_putamen_basal |
RS3743077 | 15 | 78894896 | chrna3 | ENSG00000080644.11 | 1.735E-7 | 0 | 18741 | gtex_brain_putamen_basal |
rs62010328 | 15 | 78894971 | chrna3 | ENSG00000080644.11 | 3.513E-10 | 0 | 18666 | gtex_brain_putamen_basal |
rs75104798 | 15 | 78897865 | chrna3 | ENSG00000080644.11 | 7.203E-11 | 0 | 15772 | gtex_brain_putamen_basal |
rs7182583 | 15 | 78899210 | chrna3 | ENSG00000080644.11 | 8.888e-12 | 0 | 14427 | gtex_brain_putamen_basal |
rs111725959 | 15 | 78899346 | chrna3 | ENSG00000080644.11 | 6.724E-11 | 0 | 14291 | gtex_brain_putamen_basal |
rs7495518 | 15 | 78900574 | chrna3 | ENSG00000080644.11 | 3.595E-10 | 0 | 13063 | gtex_brain_putamen_basal |
RS139978901 | 15 | 78902026 | chrna3 | ENSG00000080644.11 | 9.923E-8 | 0 | 11611 | gtex_brain_putamen_basal |
RS183822442 | 15 | 78902775 | chrna3 | ENSG00000080644.11 | 2.634E-8 | 0 | 10862 | gtex_brain_putamen_basal |
rs190259891 | 15 | 78902906 | chrna3 | ENSG00000080644.11 | 1.287E-7 | 0 | 10731 | gtex_brain_putamen_basal |
rs77403874 | 15 | 78903165 | chrna3 | ENSG00000080644.11 | 1.081E-7 | 0 | 10472 | gtex_brain_putamen_basal |
RS9646187 | 15 | 78906128 | chrna3 | ENSG00000080644.11 | 1.882E-10 | 0 | 7509 | gtex_brain_putamen_basal |
RS2869546 | 15 | 78907345 | chrna3 | ENSG00000080644.11 | 2.265e-11 | 0 | 6292 | gtex_brain_putamen_basal |
RS3743075 | 15 | 78909452 | chrna3 | ENSG00000080644.11 | 8.892E-9 | 0 | 4185 | gtex_brain_putamen_basal |
RS3743074 | 15 | 78909480 | chrna3 | ENSG00000080644.11 | 7.993E-10 | 0 | 4157 | gtex_brain_putamen_basal |
RS3743073 | 15 | 78909539 | chrna3 | ENSG00000080644.11 | 1.716E-9 | 0 | 4098 | gtex_brain_putamen_basal |
RS2067808 | 15 | 78911780 | chrna3 | ENSG00000080644.11 | 6.746e-11 | 0 | 1857年 | gtex_brain_putamen_basal |
rs1878399 | 15 | 78912003 | chrna3 | ENSG00000080644.11 | 2.291E-8 | 0 | 1634年 | gtex_brain_putamen_basal |
RS201576627 | 15 | 78912201 | chrna3 | ENSG00000080644.11 | 3.817E-7 | 0 | 1436年 | gtex_brain_putamen_basal |
rs4366683 | 15 | 78912203 | chrna3 | ENSG00000080644.11 | 3.078e-7 | 0 | 1434 | gtex_brain_putamen_basal |
RS386419558 | 15 | 78912203 | chrna3 | ENSG00000080644.11 | 1.478E-7 | 0 | 1434 | gtex_brain_putamen_basal |
rs4352017 | 15 | 78912204 | chrna3 | ENSG00000080644.11 | 1.343E-7 | 0 | 1433 | gtex_brain_putamen_basal |
RS8025188 | 15 | 78912278 | chrna3 | ENSG00000080644.11 | 2.431E-7 | 0 | 1359 | gtex_brain_putamen_basal |
RS8023462 | 15 | 78914734 | chrna3 | ENSG00000080644.11 | 2.037e-12 | 0 | -1097 | gtex_brain_putamen_basal |
rs4887070 | 15 | 78916187 | chrna3 | ENSG00000080644.11 | 3.896E-11 | 0 | -2550 | gtex_brain_putamen_basal |
RS2904130 | 15 | 78916622 | chrna3 | ENSG00000080644.11 | 1.453E-13 | 0 | -2985 | gtex_brain_putamen_basal |
rs1948 | 15 | 78917399 | chrna3 | ENSG00000080644.11 | 3E-12 | 0 | -3762 | gtex_brain_putamen_basal |
rs62010332 | 15 | 78918762 | chrna3 | ENSG00000080644.11 | 1.342E-13 | 0 | -5125 | gtex_brain_putamen_basal |
rs7178270 | 15 | 78921077 | chrna3 | ENSG00000080644.11 | 7.694E-9 | 0 | -7440 | gtex_brain_putamen_basal |
rs950776 | 15 | 78926018 | chrna3 | ENSG00000080644.11 | 8.286e-10 | 0 | -12381 | gtex_brain_putamen_basal |
rs79609284 | 15 | 78928411 | chrna3 | ENSG00000080644.11 | 3.242E-7 | 0 | -14774 | gtex_brain_putamen_basal |
rs57728226 | 15 | 78929350 | chrna3 | ENSG00000080644.11 | 1.726E-6 | 0 | -15713 | gtex_brain_putamen_basal |
rs36045869 | 15 | 78929498 | chrna3 | ENSG00000080644.11 | 1.726E-6 | 0 | -15861 | gtex_brain_putamen_basal |
rs11637890 | 15 | 78935419 | chrna3 | ENSG00000080644.11 | 1.797E-7 | 0 | -21782 | gtex_brain_putamen_basal |
rs11633223 | 15 | 78935476 | chrna3 | ENSG00000080644.11 | 1.797E-7 | 0 | -21839 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
基因ral gene expression (GTEx)
![Not available](http://www.tjghsg.com/bioinfo/SZGR/GeneImg/CHRNA3_DE_GTEx.png)
时间变化的基因表达(brainspan)
脚注:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1:胎儿(13-26个概念后周),ST2:婴儿早期至童年(4个月至11年)和ST3:青春期至成年期(13-23年)
所示的栏表示表达分布的较低25%和上层25%。
No co-expressed genes in brain regions
Section III. Gene Ontology annotation
Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
---|---|---|---|---|
去:0030594 | neurotransmitter receptor activity | IEA | 神经递质(GO期限:5) | - |
GO:0015464 | 乙酰胆碱受体活性 | IDA | 神经递质(GO期限:6) | 8906617 |
GO:0004889 | 烟碱乙酰胆碱激活的阳离子选择通道活性 | IDA | 8906617 | |
GO:0004889 | 烟碱乙酰胆碱激活的阳离子选择通道活性 | IEA | - | |
去:0005216 | ion channel activity | IEA | - | |
去:0005230 | 细胞外配体门控离子通道活性 | IEA | - | |
Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
GO:0060084 | 参与micturi突触传递tion | IEA | neuron, Synap (GO term level: 8) | - |
GO:0060084 | 参与micturi突触传递tion | IMP | neuron, Synap (GO term level: 8) | 11450844 |
去:0060079 | regulation of excitatory postsynaptic membrane potential | IEA | 神经元,突触(GO期限:10) | - |
去:0060079 | regulation of excitatory postsynaptic membrane potential | ISS | 神经元,突触(GO期限:10) | - |
GO:0007271 | synaptic transmission, cholinergic | IEA | neuron, Cholinergic, Synap, Neurotransmitter (GO term level: 7) | - |
GO:0007271 | synaptic transmission, cholinergic | ISS | neuron, Cholinergic, Synap, Neurotransmitter (GO term level: 7) | - |
GO:0014056 | regulation of acetylcholine secretion | IEA | 神经递质(GO期限:10) | - |
GO:0014056 | regulation of acetylcholine secretion | ISS | 神经递质(GO期限:10) | - |
GO:0048814 | 树突形态发生的调节 | IEA | dendrite (GO term level: 13) | - |
GO:0048814 | 树突形态发生的调节 | ISS | dendrite (GO term level: 13) | - |
去:0007399 | 神经系统的发展 | IMP | 神经突(GO期限:5) | 11450844 |
去:0007165 | signal transduction | IDA | 8906617 | |
去:0007626 | locomotory behavior | IEA | - | |
去:0007626 | locomotory behavior | ISS | - | |
GO:0006811 | ion transport | IEA | - | |
GO:0006811 | ion transport | nas | 8906617 | |
去:0006940 | regulation of smooth muscle contraction | IEA | - | |
去:0006940 | regulation of smooth muscle contraction | ISS | - | |
去:0007171 | 跨膜受体蛋白激酶活性的激活 | IEA | - | |
去:0007171 | 跨膜受体蛋白激酶活性的激活 | ISS | - | |
GO:0042391 | 调节膜电位 | IEA | - | |
GO:0042391 | 调节膜电位 | ISS | - | |
GO:0035095 | 对尼古丁的行为反应 | IEA | - | |
GO:0035095 | 对尼古丁的行为反应 | IMP | 18227835 | |
细胞分量 | GO term | Evidence | Neuro keywords | PubMed ID |
去:0005892 | 烟碱乙酰胆碱门控受体通道复合物 | IDA | 神经递质(GO期限:9) | 8906617 |
去:0005892 | 烟碱乙酰胆碱门控受体通道复合物 | IEA | 神经递质(GO期限:9) | - |
GO:0045211 | 突触后膜 | IEA | Synap, Neurotransmitter (GO term level: 5) | - |
GO:0045202 | 突触 | IEA | neuron, Synap, Neurotransmitter, Glial (GO term level: 2) | - |
GO:0016021 | 膜不可或缺 | IEA | - | |
GO:0016021 | 膜不可或缺 | nas | 8906617 | |
去:0005886 | plasma membrane | IEA | - | |
GO:0030054 | cell junction | IEA | - |
Section V. Pathway annotation
路径名 | Pathway size | #szgr 2.0基因 | Info |
---|---|---|---|
KEGG神经活性配体受体相互作用 | 272 | 195 | All SZGR 2.0 genes in this pathway |
REACTOME TRANSMISSION ACROSS CHEMICAL SYNAPSES | 186 | 155 | All SZGR 2.0 genes in this pathway |
Reactome神经元系统 | 279 | 221 | All SZGR 2.0 genes in this pathway |
反应组神经递质受体结合和突触后细胞中的下游传播 | 137 | 110 | All SZGR 2.0 genes in this pathway |
REACTOME ACETYLCHOLINE BINDING AND DOWNSTREAM EVENTS | 16 | 13 | All SZGR 2.0 genes in this pathway |
REACTOME HIGHLY CALCIUM PERMEABLE POSTSYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | 13 | 12 | All SZGR 2.0 genes in this pathway |
REACTOME PRESYNAPTIC NICOTINIC ACETYLCHOLINE RECEPTORS | 12 | 10 | All SZGR 2.0 genes in this pathway |
DOANE RESPONSE TO ANDROGEN UP | 184 | 125 | All SZGR 2.0 genes in this pathway |
grabarczyk bcl11b目标dn | 57 | 35 | All SZGR 2.0 genes in this pathway |
Kim WT1靶向12小时 | 162 | 116 | All SZGR 2.0 genes in this pathway |
DODD NASOPHARYNGEAL CARCINOMA UP | 1821年 | 933 | All SZGR 2.0 genes in this pathway |
CONCANNON APOPTOSIS BY EPOXOMICIN DN | 172 | 112 | All SZGR 2.0 genes in this pathway |
kang lith pdgfra up | 50 | 27 | All SZGR 2.0 genes in this pathway |
Benporath Suz12目标 | 1038 | 678 | All SZGR 2.0 genes in this pathway |
Shen Smarca2靶向DN | 357 | 212 | All SZGR 2.0 genes in this pathway |
Shipp DLBCL治愈与致命 | 39 | 22 | All SZGR 2.0 genes in this pathway |
KANG IMMORTALIZED BY TERT UP | 89 | 61 | All SZGR 2.0 genes in this pathway |
RODWELL AGING KIDNEY NO BLOOD UP | 222 | 139 | All SZGR 2.0 genes in this pathway |
RODWELL AGING KIDNEY UP | 487 | 303 | All SZGR 2.0 genes in this pathway |
Meissner NPC HCP,含H3未甲基化 | 536 | 296 | All SZGR 2.0 genes in this pathway |
MEISSNER BRAIN HCP WITH H3K27ME3 | 269 | 159 | All SZGR 2.0 genes in this pathway |
MIKKELSEN MCV6 HCP WITH H3K27ME3 | 435 | 318 | All SZGR 2.0 genes in this pathway |
MIKKELSEN MEF HCP WITH H3K27ME3 | 590 | 403 | All SZGR 2.0 genes in this pathway |