Gene Page:PCMTD1
Summary?
| GeneID | 115294 |
| Symbol | PCMTD1 |
| Synonyms | - |
| Description | protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 |
| Reference | HGNC:HGNC:30483|Ensembl:ENSG00000168300|HPRD:08313|Vega:OTTHUMG00000164246 |
| Gene type | protein-coding |
| Map location | 8q11.23 |
| Pascal p-value | 0.004 |
| eGene | Myers' cis & trans 元 |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
eQTL annotation| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs16916610 | chr8 | 52528789 | PCMTD1 | 115294 | 0.01 | cis | ||
| rs6998137 | chr8 | 52536827 | PCMTD1 | 115294 | 0.02 | cis | ||
| rs12548130 | chr8 | 52558394 | PCMTD1 | 115294 | 0.05 | cis | ||
| rs4873570 | chr8 | 52579315 | PCMTD1 | 115294 | 5.878E-4 | cis | ||
| rs7014372 | chr8 | 52582500 | PCMTD1 | 115294 | 0 | cis | ||
| rs4873573 | chr8 | 52601750 | PCMTD1 | 115294 | 0.01 | cis | ||
| rs6986571 | chr8 | 52605268 | PCMTD1 | 115294 | 0.05 | cis | ||
| rs4873584 | chr8 | 52639743 | PCMTD1 | 115294 | 2.919E-4 | cis | ||
| rs7013360 | chr8 | 52713005 | PCMTD1 | 115294 | 1.087E-4 | cis | ||
| rs763550 | chr8 | 52715464 | PCMTD1 | 115294 | 0.01 | cis | ||
| rs6990379 | chr8 | 52716136 | PCMTD1 | 115294 | 8.032E-6 | cis | ||
| rs16916856 | chr8 | 52739149 | PCMTD1 | 115294 | 1.704E-4 | cis | ||
| rs10504130 | chr8 | 52757092 | PCMTD1 | 115294 | 2.625E-4 | cis | ||
| rs17212214 | chr8 | 52831141 | PCMTD1 | 115294 | 1.245E-5 | cis | ||
| rs16916961 | chr8 | 52831177 | PCMTD1 | 115294 | 1.64E-4 | cis | ||
| rs6473667 | chr8 | 52840129 | PCMTD1 | 115294 | 9.366E-4 | cis | ||
| rs11785805 | chr8 | 52841869 | PCMTD1 | 115294 | 2.998E-5 | cis | ||
| rs16916968 | chr8 | 52844410 | PCMTD1 | 115294 | 0 | cis | ||
| rs4873570 | chr8 | 52579315 | PCMTD1 | 115294 | 0.05 | trans | ||
| rs7014372 | chr8 | 52582500 | PCMTD1 | 115294 | 0.08 | trans | ||
| rs4873584 | chr8 | 52639743 | PCMTD1 | 115294 | 0.03 | trans | ||
| rs7013360 | chr8 | 52713005 | PCMTD1 | 115294 | 0.01 | trans | ||
| rs6990379 | chr8 | 52716136 | PCMTD1 | 115294 | 0 | trans | ||
| snp_a-1993256 | 0 | PCMTD1 | 115294 | 0.03 | trans | |||
| rs16916856 | chr8 | 52739149 | PCMTD1 | 115294 | 0.02 | trans | ||
| rs10504130 | chr8 | 52757092 | PCMTD1 | 115294 | 0.02 | trans | ||
| rs17212214 | chr8 | 52831141 | PCMTD1 | 115294 | 0 | trans | ||
| rs16916961 | chr8 | 52831177 | PCMTD1 | 115294 | 0.02 | trans | ||
| rs6473667 | chr8 | 52840129 | PCMTD1 | 115294 | 0.07 | trans | ||
| rs11785805 | chr8 | 52841869 | PCMTD1 | 115294 | 0 | trans | ||
| rs16916968 | chr8 | 52844410 | PCMTD1 | 115294 | 0.1 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 - 26 postconceptionweeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| NAKAMURA TUMOR ZONE PERIPHERAL VS CENTRAL DN | 634 | 384 | All SZGR 2.0 genes in this pathway |
| HORIUCHI WTAP TARGETS UP | 306 | 188 | All SZGR 2.0 genes in this pathway |
| WANG LMO4 TARGETS UP | 372 | 227 | All SZGR 2.0 genes in this pathway |
| OSMAN BLADDER CANCER UP | 404 | 246 | All SZGR 2.0 genes in this pathway |
| RODRIGUES THYROID CARCINOMA POORLY DIFFERENTIATED DN | 805 | 505 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN APOPTOSIS BY DOXORUBICIN DN | 1781 | 1082 | All SZGR 2.0 genes in this pathway |
| MCBRYAN PUBERTAL BREAST 4 5WK DN | 196 | 131 | All SZGR 2.0 genes in this pathway |
| MCBRYAN PUBERTAL BREAST 6 7WK UP | 197 | 135 | All SZGR 2.0 genes in this pathway |
| NUYTTEN NIPP1 TARGETS DN | 848 | 527 | All SZGR 2.0 genes in this pathway |
| CUI TCF21 TARGETS 2 DN | 830 | 547 | All SZGR 2.0 genes in this pathway |
| IVANOVA HEMATOPOIESIS STEM CELL AND PROGENITOR | 681 | 420 | All SZGR 2.0 genes in this pathway |
| DOUGLAS BMI1 TARGETS DN | 314 | 188 | All SZGR 2.0 genes in this pathway |
| KRIGE RESPONSE TO TOSEDOSTAT 6HR UP | 953 | 554 | All SZGR 2.0 genes in this pathway |
| KRIGE RESPONSE TO TOSEDOSTAT 24HR UP | 783 | 442 | All SZGR 2.0 genes in this pathway |
| ACEVEDO NORMAL TISSUE ADJACENT TO LIVER TUMOR UP | 174 | 96 | All SZGR 2.0 genes in this pathway |
| ZHANG BREAST CANCER PROGENITORS DN | 145 | 93 | All SZGR 2.0 genes in this pathway |
| CHUNG BLISTER CYTOTOXICITY DN | 44 | 29 | All SZGR 2.0 genes in this pathway |
| CHANG CORE SERUM RESPONSE DN | 209 | 137 | All SZGR 2.0 genes in this pathway |
| ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY | 1839 | 928 | All SZGR 2.0 genes in this pathway |