Summary?
GeneID 116028
Symbol RMI2
Synonyms BLAP18|C16orf75
Description RecQ mediated genome instability 2
Reference MIM:612426|HGNC:HGNC:28349|Ensembl:ENSG00000175643|HPRD:14497|Vega:OTTHUMG00000129793
Gene type protein-coding
地图上的位置 16p13.13
Pascal p-value 0.665
eGene Anterior cingulate cortex BA24
Caudate basal ganglia
Cerebellar Hemisphere
Cerebellum
Cortex
Frontal Cortex BA9
Hippocampus
Hypothalamus
Nucleus accumbens basal ganglia
Putamen basal ganglia

Gene in Data Sources
基因集名称 方法of gene set Description Info
CV:PGCnp Genome-wide Association Study GWAS
CV:PheWAS Phenome-wide association studies (PheWAS) 157 SNPs associated with schizophrenia 0

Section I. Genetics and epigenetics annotation

@CV:PheWAS

SNP ID Chromosome Position Allele P Function Gene Up/Down Distance

@eQTL annotation

SNP ID Chromosome Position eGene Gene Entrez ID pvalue qvalue TSS distance eQTL type
rs171591 chr16 11288934 C16orf75 116028 0.08 cis
rs168716 chr16 11309750 C16orf75 116028 0.05 cis
rs149311 chr16 11345753 C16orf75 116028 0.07 cis
rs243327 chr16 11353303 C16orf75 116028 6.167E-12 cis
rs243325 chr16 11354496 C16orf75 116028 0 cis
rs416603 chr16 11364078 C16orf75 116028 5.025E-9 cis
rs431918 chr16 11365415 C16orf75 116028 0.01 cis
rs1559394 chr16 11369204 C16orf75 116028 0 cis
rs4451969 chr16 11383518 C16orf75 116028 0.15 cis
rs11640295 chr16 11390727 C16orf75 116028 7.259E-4 cis
rs1874021 chr16 11391189 C16orf75 116028 1.009E-5 cis
rs12927773 chr16 11403962 C16orf75 116028 0 cis
rs2867945 chr16 11406017 C16orf75 116028 0.01 cis
rs6498184 chr16 11435989 C16orf75 116028 0.01 cis
rs243327 chr16 11353303 C16orf75 116028 1.554E-9 trans
rs243325 chr16 11354496 C16orf75 116028 0.12 trans
rs416603 chr16 11364078 C16orf75 116028 1.232E-6 trans
rs1559394 chr16 11369204 C16orf75 116028 0.1 trans
rs11640295 chr16 11390727 C16orf75 116028 0.05 trans
rs1874021 chr16 11391189 C16orf75 116028 0 trans
rs12927773 chr16 11403962 C16orf75 116028 0.19 trans
rs243329 16 11352313 RMI2 ENSG00000175643.7 1.224E-6 0 8807 gtex_brain_ba24
rs243327 16 11353304 RMI2 ENSG00000175643.7 1.227E-6 0 9798 gtex_brain_ba24
rs243324 16 11354970 RMI2 ENSG00000175643.7 1.225E-6 0 11464 gtex_brain_ba24
rs11640138 16 11362729 RMI2 ENSG00000175643.7 1.498E-6 0 19223 gtex_brain_ba24
rs7191538 16 11363389 RMI2 ENSG00000175643.7 1.671E-6 0 19883 gtex_brain_ba24
rs11644184 16 11365104 RMI2 ENSG00000175643.7 1.499E-6 0 21598 gtex_brain_ba24
rs2301127 16 11367477 RMI2 ENSG00000175643.7 2.795E-7 0 23971 gtex_brain_ba24
rs243314 16 11385104 RMI2 ENSG00000175643.7 1.432E-8 0 41598 gtex_brain_ba24
rs171470 16 11385964 RMI2 ENSG00000175643.7 3.866E-8 0 42458 gtex_brain_ba24
rs7189239 16 11402515 RMI2 ENSG00000175643.7 1.642E-8 0 59009 gtex_brain_ba24
rs7191700 16 11406803 RMI2 ENSG00000175643.7 1.068E-7 0 63297 gtex_brain_ba24
rs12325495 16 11418328 RMI2 ENSG00000175643.7 9.204E-12 0 74822 gtex_brain_ba24
rs12597893 16 11426331 RMI2 ENSG00000175643.7 4.324E-12 0 82825 gtex_brain_ba24
rs28502009 16 11426541 RMI2 ENSG00000175643.7 2.757E-8 0 83035 gtex_brain_ba24
rs13334203 16 11428538 RMI2 ENSG00000175643.7 2.346E-8 0 85032 gtex_brain_ba24
rs12708722 16 11428905 RMI2 ENSG00000175643.7 2.344E-8 0 85399 gtex_brain_ba24
rs10163410 16 11430615 RMI2 ENSG00000175643.7 2.019E-8 0 87109 gtex_brain_ba24
rs7187741 16 11433103 RMI2 ENSG00000175643.7 4.598E-12 0 89597 gtex_brain_ba24
rs12149160 16 11439303 RMI2 ENSG00000175643.7 1.433E-12 0 95797 gtex_brain_ba24
rs918738 16 11439679 RMI2 ENSG00000175643.7 3.761E-11 0 96173 gtex_brain_ba24
rs152303 16 11308099 RMI2 ENSG00000175643.7 4.623E-7 0 -35407 gtex_brain_putamen_basal
rs1646072 16 11324799 RMI2 ENSG00000175643.7 5.032E-8 0 -18707 gtex_brain_putamen_basal
rs1640926 16 11324843 RMI2 ENSG00000175643.7 1.224E-8 0 -18663 gtex_brain_putamen_basal
rs1646073 16 11325215 RMI2 ENSG00000175643.7 1.205E-8 0 -18291 gtex_brain_putamen_basal
rs149597 16 11343942 RMI2 ENSG00000175643.7 2.28E-10 0 436 gtex_brain_putamen_basal
rs12929112 16 11346008 RMI2 ENSG00000175643.7 7.725E-9 0 2502 gtex_brain_putamen_basal
rs16958175 16 11347199 RMI2 ENSG00000175643.7 1.535E-8 0 3693 gtex_brain_putamen_basal
rs33932899 16 11348211 RMI2 ENSG00000175643.7 4.778E-9 0 4705 gtex_brain_putamen_basal
rs33977706 16 11350155 RMI2 ENSG00000175643.7 1.691E-9 0 6649 gtex_brain_putamen_basal
rs243330 16 11350991 RMI2 ENSG00000175643.7 1.162E-11 0 7485 gtex_brain_putamen_basal
rs243329 16 11352313 RMI2 ENSG00000175643.7 2.471E-11 0 8807 gtex_brain_putamen_basal
rs62023594 16 11352930 RMI2 ENSG00000175643.7 1.551E-9 0 9424 gtex_brain_putamen_basal
rs243327 16 11353304 RMI2 ENSG00000175643.7 9.054E-12 0 9798 gtex_brain_putamen_basal
rs1559392 16 11354820 RMI2 ENSG00000175643.7 1.55E-9 0 11314 gtex_brain_putamen_basal
rs243324 16 11354970 RMI2 ENSG00000175643.7 2.471E-11 0 11464 gtex_brain_putamen_basal
rs7195183 16 11355273 RMI2 ENSG00000175643.7 7.974E-11 0 11767 gtex_brain_putamen_basal
rs7196694 16 11355364 RMI2 ENSG00000175643.7 1.559E-9 0 11858 gtex_brain_putamen_basal
rs171471 16 11355450 RMI2 ENSG00000175643.7 2.433E-11 0 11944 gtex_brain_putamen_basal
rs71136634 16 11358035 RMI2 ENSG00000175643.7 4.759E-9 0 14529 gtex_brain_putamen_basal
rs12923756 16 11359675 RMI2 ENSG00000175643.7 3.507E-11 0 16169 gtex_brain_putamen_basal
rs442154 16 11359852 RMI2 ENSG00000175643.7 2.441E-11 0 16346 gtex_brain_putamen_basal
rs243319 16 11359929 RMI2 ENSG00000175643.7 2.442E-11 0 16423 gtex_brain_putamen_basal
rs56739517 16 11360607 RMI2 ENSG00000175643.7 1.492E-10 0 17101 gtex_brain_putamen_basal
rs8053977 16 11360701 RMI2 ENSG00000175643.7 1.775E-9 0 17195 gtex_brain_putamen_basal
rs8058983 16 11360849 RMI2 ENSG00000175643.7 7.78E-12 0 17343 gtex_brain_putamen_basal
rs71406221 16 11361533 RMI2 ENSG00000175643.7 1.661E-10 0 18027 gtex_brain_putamen_basal
rs8043625 16 11361895 RMI2 ENSG00000175643.7 8.19E-12 0 18389 gtex_brain_putamen_basal
rs11640138 16 11362729 RMI2 ENSG00000175643.7 2.517E-11 0 19223 gtex_brain_putamen_basal
rs7191538 16 11363389 RMI2 ENSG00000175643.7 1.895E-11 0 19883 gtex_brain_putamen_basal
rs415595 16 11363692 RMI2 ENSG00000175643.7 3.984E-11 0 20186 gtex_brain_putamen_basal
rs416603 16 11364079 RMI2 ENSG00000175643.7 3.984E-11 0 20573 gtex_brain_putamen_basal
rs11644184 16 11365104 RMI2 ENSG00000175643.7 2.972E-11 0 21598 gtex_brain_putamen_basal
rs35598356 16 11367195 RMI2 ENSG00000175643.7 3.542E-7 0 23689 gtex_brain_putamen_basal
rs2301127 16 11367477 RMI2 ENSG00000175643.7 7.473E-9 0 23971 gtex_brain_putamen_basal
rs12447450 16 11368187 RMI2 ENSG00000175643.7 5.518E-9 0 24681 gtex_brain_putamen_basal
rs11641715 16 11371279 RMI2 ENSG00000175643.7 5.726E-9 0 27773 gtex_brain_putamen_basal
rs11645592 16 11371310 RMI2 ENSG00000175643.7 5.728E-9 0 27804 gtex_brain_putamen_basal
rs11644626 16 11373336 RMI2 ENSG00000175643.7 5.816E-9 0 29830 gtex_brain_putamen_basal
rs2301365 16 11375286 RMI2 ENSG00000175643.7 3.4E-9 0 31780 gtex_brain_putamen_basal
rs36056414 16 11375807 RMI2 ENSG00000175643.7 5.816E-9 0 32301 gtex_brain_putamen_basal
rs12930005 16 11376740 RMI2 ENSG00000175643.7 5.816E-9 0 33234 gtex_brain_putamen_basal
rs397855475 16 11381336 RMI2 ENSG00000175643.7 3.935E-9 0 37830 gtex_brain_putamen_basal
rs243314 16 11385104 RMI2 ENSG00000175643.7 1.287E-9 0 41598 gtex_brain_putamen_basal
rs11647972 16 11385329 RMI2 ENSG00000175643.7 2.17E-9 0 41823 gtex_brain_putamen_basal
rs171470 16 11385964 RMI2 ENSG00000175643.7 1.189E-9 0 42458 gtex_brain_putamen_basal
rs34165648 16 11387129 RMI2 ENSG00000175643.7 2.217E-9 0 43623 gtex_brain_putamen_basal
rs398364 16 11387164 RMI2 ENSG00000175643.7 1.556E-7 0 43658 gtex_brain_putamen_basal
rs1874021 16 11391190 RMI2 ENSG00000175643.7 6.047E-9 0 47684 gtex_brain_putamen_basal
rs8057417 16 11392772 RMI2 ENSG00000175643.7 1.556E-7 0 49266 gtex_brain_putamen_basal
rs11640788 16 11393081 RMI2 ENSG00000175643.7 2.217E-9 0 49575 gtex_brain_putamen_basal
rs11646534 16 11397083 RMI2 ENSG00000175643.7 2.217E-9 0 53577 gtex_brain_putamen_basal
rs7204734 16 11402368 RMI2 ENSG00000175643.7 7.219E-9 0 58862 gtex_brain_putamen_basal
rs7189239 16 11402515 RMI2 ENSG00000175643.7 2.449E-12 0 59009 gtex_brain_putamen_basal
rs7190580 16 11403470 RMI2 ENSG00000175643.7 5.482E-8 0 59964 gtex_brain_putamen_basal
rs1345878 16 11404753 RMI2 ENSG00000175643.7 8.304E-9 0 61247 gtex_brain_putamen_basal
rs1345879 16 11404762 RMI2 ENSG00000175643.7 8.29E-9 0 61256 gtex_brain_putamen_basal
rs7191700 16 11406803 RMI2 ENSG00000175643.7 5.597E-9 0 63297 gtex_brain_putamen_basal
rs12596526 16 11408692 RMI2 ENSG00000175643.7 2.235E-10 0 65186 gtex_brain_putamen_basal
rs35051965 16 11415593 RMI2 ENSG00000175643.7 2.525E-10 0 72087 gtex_brain_putamen_basal
rs62023635 16 11418313 RMI2 ENSG00000175643.7 4.398E-10 0 74807 gtex_brain_putamen_basal
rs12325495 16 11418328 RMI2 ENSG00000175643.7 4.945 e-13 0 74822 gtex_brain_putamen_basal
rs12448960 16 11419378 RMI2 ENSG00000175643.7 4.844E-10 0 75872 gtex_brain_putamen_basal
rs11074960 16 11420185 RMI2 ENSG00000175643.7 2.083E-9 0 76679 gtex_brain_putamen_basal
rs11074961 16 11422245 RMI2 ENSG00000175643.7 4.844E-10 0 78739 gtex_brain_putamen_basal
rs2903826 16 11424354 RMI2 ENSG00000175643.7 3.808E-9 0 80848 gtex_brain_putamen_basal
rs12598361 16 11426176 RMI2 ENSG00000175643.7 7.591E-10 0 82670 gtex_brain_putamen_basal
rs12597893 16 11426331 RMI2 ENSG00000175643.7 1.124E-12 0 82825 gtex_brain_putamen_basal
rs28502009 16 11426541 RMI2 ENSG00000175643.7 3.321E-7 0 83035 gtex_brain_putamen_basal
rs11649254 16 11426729 RMI2 ENSG00000175643.7 5.387E-10 0 83223 gtex_brain_putamen_basal
rs11645318 16 11426730 RMI2 ENSG00000175643.7 5.387E-10 0 83224 gtex_brain_putamen_basal
rs8063167 16 11426972 RMI2 ENSG00000175643.7 5.955E-10 0 83466 gtex_brain_putamen_basal
rs8044010 16 11427106 RMI2 ENSG00000175643.7 5.955E-10 0 83600 gtex_brain_putamen_basal
rs6498180 16 11427123 RMI2 ENSG00000175643.7 5.955E-10 0 83617 gtex_brain_putamen_basal
rs7185158 16 11427426 RMI2 ENSG00000175643.7 5.955E-10 0 83920 gtex_brain_putamen_basal
rs1989698 16 11428372 RMI2 ENSG00000175643.7 5.955E-10 0 84866 gtex_brain_putamen_basal
rs13334203 16 11428538 RMI2 ENSG00000175643.7 3.333E-7 0 85032 gtex_brain_putamen_basal
rs12708722 16 11428905 RMI2 ENSG00000175643.7 3.419E-7 0 85399 gtex_brain_putamen_basal
rs59679684 16 11429242 RMI2 ENSG00000175643.7 1.298E-6 0 85736 gtex_brain_putamen_basal
rs28469634 16 11429939 RMI2 ENSG00000175643.7 1.519E-9 0 86433 gtex_brain_putamen_basal
rs10163410 16 11430615 RMI2 ENSG00000175643.7 3.345E-7 0 87109 gtex_brain_putamen_basal
rs7199624 16 11431464 RMI2 ENSG00000175643.7 5.949E-8 0 87958 gtex_brain_putamen_basal
rs397754675 16 11431778 RMI2 ENSG00000175643.7 6.74E-10 0 88272 gtex_brain_putamen_basal
rs7187741 16 11433103 RMI2 ENSG00000175643.7 2.488E-12 0 89597 gtex_brain_putamen_basal
rs7194978 16 11433811 RMI2 ENSG00000175643.7 5.074E-7 0 90305 gtex_brain_putamen_basal
rs12599600 16 11434102 RMI2 ENSG00000175643.7 2.259E-9 0 90596 gtex_brain_putamen_basal
rs9929997 16 11434941 RMI2 ENSG00000175643.7 2.262E-9 0 91435 gtex_brain_putamen_basal
rs62023658 16 11435171 RMI2 ENSG00000175643.7 4.844E-10 0 91665 gtex_brain_putamen_basal
rs12446094 16 11435743 RMI2 ENSG00000175643.7 4.844E-10 0 92237 gtex_brain_putamen_basal
rs12446881 16 11435855 RMI2 ENSG00000175643.7 4.844E-10 0 92349 gtex_brain_putamen_basal
rs11645146 16 11436069 RMI2 ENSG00000175643.7 4.807E-10 0 92563 gtex_brain_putamen_basal
rs11645404 16 11436629 RMI2 ENSG00000175643.7 1.021 e-9 0 93123 gtex_brain_putamen_basal
rs12444882 16 11436755 RMI2 ENSG00000175643.7 4.706E-10 0 93249 gtex_brain_putamen_basal
rs12447782 16 11437388 RMI2 ENSG00000175643.7 4.623E-10 0 93882 gtex_brain_putamen_basal
rs12149160 16 11439303 RMI2 ENSG00000175643.7 1.383E-12 0 95797 gtex_brain_putamen_basal
rs918738 16 11439679 RMI2 ENSG00000175643.7 6.177E-11 0 96173 gtex_brain_putamen_basal
rs34850017 16 11440032 RMI2 ENSG00000175643.7 5.974E-10 0 96526 gtex_brain_putamen_basal
rs36090551 16 11443873 RMI2 ENSG00000175643.7 6.001E-10 0 100367 gtex_brain_putamen_basal
rs1061128 16 11445404 RMI2 ENSG00000175643.7 2E-6 0 101898 gtex_brain_putamen_basal
rs397939374 16 11445625 RMI2 ENSG00000175643.7 1.63E-8 0 102119 gtex_brain_putamen_basal
rs34007496 16 11446143 RMI2 ENSG00000175643.7 5.962E-10 0 102637 gtex_brain_putamen_basal
rs62025663 16 11448053 RMI2 ENSG00000175643.7 7.933E-9 0 104547 gtex_brain_putamen_basal
rs11648940 16 11449536 RMI2 ENSG00000175643.7 9.861E-8 0 106030 gtex_brain_putamen_basal

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
PYEON HPV POSITIVE TUMORS UP 98 47 All SZGR 2.0 genes in this pathway
WANG LMO4 TARGETS UP 372 227 All SZGR 2.0 genes in this pathway
SLEBOS HEAD AND NECK CANCER WITH HPV UP 84 43 All SZGR 2.0 genes in this pathway
KINSEY TARGETS OF EWSR1 FLII FUSION UP 1278 748 All SZGR 2.0 genes in this pathway
DODD NASOPHARYNGEAL CARCINOMA DN 1375 806 All SZGR 2.0 genes in this pathway
LINDGREN BLADDER CANCER CLUSTER 3 UP 329 196 All SZGR 2.0 genes in this pathway
NUYTTEN EZH2 TARGETS DN 1024 594 All SZGR 2.0 genes in this pathway
LOCKWOOD AMPLIFIED IN LUNG CANCER 214 139 All SZGR 2.0 genes in this pathway
RICKMAN TUMOR DIFFERENTIATED WELL VS POORLY UP 236 139 All SZGR 2.0 genes in this pathway
CREIGHTON ENDOCRINE THERAPY RESISTANCE 1 528 324 All SZGR 2.0 genes in this pathway
ACEVEDO LIVER CANCER UP 973 570 All SZGR 2.0 genes in this pathway
ACEVEDO LIVER TUMOR VS NORMAL ADJACENT TISSUE UP 863 514 All SZGR 2.0 genes in this pathway
GRADE COLON AND RECTAL CANCER UP 285 167 All SZGR 2.0 genes in this pathway
LEE LIVER CANCER SURVIVAL DN 175 103 All SZGR 2.0 genes in this pathway
CHIANG LIVER CANCER SUBCLASS PROLIFERATION UP 178 108 All SZGR 2.0 genes in this pathway
WHITFIELD CELL CYCLE G1 S 147 76 All SZGR 2.0 genes in this pathway
FORTSCHEGGER PHF8 TARGETS DN 784 464 All SZGR 2.0 genes in this pathway