Gene Page:CREB1
Summary?
GeneID | 1385 |
Symbol | CREB1 |
Synonyms | Creb | Creb-1 |
Description | cAMP responsive element binding protein 1 |
Reference | MIM:123810|HGNC:HGNC:2345|Ensembl:ENSG00000118260|HPRD:00442|Vega:Otthumg00000132936 |
基因类型 | 蛋白质编码 |
Map location | 2Q34 |
Pascal p-value | 3.592E-6 |
Sherlock p-value | 0.153 |
胎儿β | 1.69 |
Gene in Data Sources
基因集名称 | Method of gene set | Description | 信息 |
---|---|---|---|
CV:PGCnp | Genome-wide Association Study | GWAS | |
PMID:cooccur | High-throughput literature-search | PubMed中的系统搜索与SCZ关键字共发生的基因。总共包括3027个基因。 | |
GSMA_IIA | Genome scan meta-analysis (All samples) | PSR:0.00916 | |
gsma_iie | Genome scan meta-analysis (European-ancestry samples) | Psr: 0.01016 | |
Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias | 点击显示详细信息 |
Network | Shortest path distance of core genes in the Human protein-protein interaction network | Contribution to shortest path in PPI network: 0.0239 |
Section I. Genetics and epigenetics annotation
第二节。转录组注释
一般基因表达(GTEX)
![Not available](http://www.tjghsg.com/bioinfo/SZGR/GeneImg/CREB1_DE_GTEx.png)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
时间变化的基因表达(brainspan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
所示的栏表示表达分布的较低25%和上层25%。
大脑区域的顶级共表达基因
Top 10 positively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
NDRG4 | 0.81 | 0.78 |
GPR123 | 0.81 | 0.82 |
SYNGR3 | 0.80 | 0.83 |
GPR61 | 0.79 | 0.77 |
C19orf28 | 0.78 | 0.79 |
ZDHHC14 | 0.78 | 0.77 |
SLC25A22 | 0.78 | 0.82 |
猪 | 0.77 | 0.78 |
PPAPDC3 | 0.77 | 0.80 |
clstn3 | 0.77 | 0.75 |
Top 10 negatively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
RAB13 | -0.41 | -0.49 |
GTF3C6 | -0.40 | -0.39 |
NSBP1 | -0.39 | -0.44 |
ANP32B | -0.39 | -0.48 |
EIF5B | -0.39 | -0.45 |
RBMX2 | -0.38 | -0.39 |
C21orf57 | -0.38 | -0.37 |
GSTM2 | -0.37 | -0.38 |
CWF19L2 | -0.36 | -0.41 |
C9orf46 | -0.36 | -0.36 |
第三节。基因本体论注释
Molecular function | 去学期 | 证据 | 神经关键字 | PubMed ID |
---|---|---|---|---|
GO:0003700 | transcription factor activity | IEA | - | |
GO:0003700 | transcription factor activity | TAS | 10909971 | |
GO:0003712 | transcription cofactor activity | TAS | 8552098 | |
GO:0043565 | sequence-specific DNA binding | IEA | - | |
GO:0046983 | protein dimerization activity | IEA | - | |
Biological process | 去学期 | 证据 | 神经关键字 | PubMed ID |
GO:0006355 | 调节转录,DNA依赖性的调节 | IEA | - | |
GO:0006468 | protein amino acid phosphorylation | IDA | 8798441 | |
去:0007165 | signal transduction | TAS | 2974179 | |
GO:0044419 | interspecies interaction between organisms | IEA | - | |
Cellular component | 去学期 | 证据 | 神经关键字 | PubMed ID |
去:0005634 | nucleus | IEA | - | |
去:0005634 | nucleus | TAS | 10909971 | |
去:0005654 | nucleoplasm | EXP | 9687510|9770464|9829964 |
Section IV. Protein-protein interaction annotation
Interactors | 别名b | 官方全名b | 实验 | Source | PubMed ID |
---|---|---|---|---|---|
ABL1 | ABL |JTK7 |BCR/ABL |c-abl |P150 |V-ABL | C-ABL癌基因1,受体酪氨酸激酶 | 重构的复合物 | Biogrid | 7565761 |
ATF1 | EWS-ATF1 | FUS/ATF-1 | TREB36 | activating transcription factor 1 | - | HPRD,BioGRID | 1655749|8384217 |
ATM | AT1 | ATA | ATC | ATD | ATDC | ATE | DKFZp781A0353 | MGC74674 | TEL1 | TELO1 | ataxia telangiectasia mutated | 亲和力捕获 - 韦斯特恩 | Biogrid | 15073328 |
BRCA1 | Brcai |BRCC1 |虹膜|PSCP |RNF53 | breast cancer 1, early onset | Phenotypic Enhancement | Biogrid | 10945975 |
C14orf1 | ERG28 | NET51 | chromosome 14 open reading frame 1 | Two-hybrid | Biogrid | 16169070 |
CAMK2A | CAMKA |KIAA0968 | 钙/钙调蛋白依赖性蛋白激酶IIα | 生化活动 | Biogrid | 8663317 |
CCND1 | bcl1 |D11S287E |prad1 |U21B31 | cyclin D1 | CREB interacts with CRE. | 绑定 | 15897899 |
CEBPB | C/EBP-beta | CRP2 | IL6DBP | LAP | MGC32080 | NF-IL6 | TCF5 | CCAAT/enhancer binding protein (C/EBP), beta | - | HPRD,BioGRID | 12773552 |
CHD3 | Mi-2a | Mi2-ALPHA | ZFH | chromodomain helicase DNA binding protein 3 | Two-hybrid | Biogrid | 16169070 |
克雷布 | CBP | KAT3A | RSTS | CREB binding protein | CREB1(CREB)与CREBBP(CBP)相互作用。 | 绑定 | 16007092 |
克雷布 | CBP | KAT3A | RSTS | CREB binding protein | CBP与CREB相互作用。 | 绑定 | 15454081 |
克雷布 | CBP | KAT3A | RSTS | CREB binding protein | - | HPRD,BioGRID | 9413984 |
克莱姆 | ICER | MGC111110 | MGC17881 | MGC41893 | hCREM-2 | cAMP responsive element modulator | - | HPRD | 7809053 |
CRTC1 | FLJ14027 | KIAA0616 | MECT1 | TORC1 | WAMTP1 | CREB regulated transcription coactivator 1 | TORC1 interacts with CREB. | 绑定 | 15454081 |
CYP19A1 | ARO | ARO1 | CPV1 | CYAR | CYP19 | MGC104309 | P-450AROM | cytochrome P450, family 19, subfamily A, polypeptide 1 | CREB1 (CREB) interacts with the CYP19A1 (aromatase PII) promoter. | 绑定 | 15688015 |
dyrk1a | DYRK | DYRK1 | HP86 | MNB | MNBH | 双特异性酪氨酸(Y) - 磷酸化调节激酶1a | dyrk1ainteracts with and phosphorylates CREB. This interaction was modeled on a demonstrated interaction between human DYRK1A and CREB from rat. | 绑定 | 15694837 |
EDF1 | EDF-1 |MBF1 |MGC9058 | endothelial differentiation-related factor 1 | - | HPRD,BioGRID | 10567391 |
EP300 | KAT3B | p300 | E1A binding protein p300 | 亲和力捕获 - 韦斯特恩 | Biogrid | 10506141 |
FHL2 | AAG11 |Dral |Slim3 | four and a half LIM domains 2 | 亲和力捕获 - 韦斯特恩 Two-hybrid |
Biogrid | 11046156 |
FHL3 | MGC19547 |MGC23614 |MGC8696 |Slim2 | four and a half LIM domains 3 | 亲和力捕获 - 韦斯特恩 Two-hybrid |
Biogrid | 11046156 |
FHL5 | ACT | FLJ33049 | KIAA0776 | RP3-393D12.2 | dJ393D12.2 | four and a half LIM domains 5 | - | HPRD,BioGRID | 11046156 |
FOSL1 | 联邦铁路局|FRA1 | fra-1 | FOS-like antigen 1 | CREB interacts with the region of the FRA-1 promoter containing the SRE and ATF sites. | 绑定 | 15806162 |
Gli2 | HPE9 | THP1 | THP2 | gli-kruppel家庭成员gli2 | - | HPRD,BioGRID | 10074179 |
GTF2F2 | BTF4 | RAP30 | TF2F2 | TFIIF | general transcription factor IIF, polypeptide 2, 30kDa | - | HPRD | 8628277 |
HNF1B | fjhn |hnf1beta |HNF2 |HPC11 |LF-B3 |LFB3 |Mody5 |TCF2 |VHNF1 | HNF1 homeobox B | Two-hybrid | Biogrid | 9671480 |
KAT5 | ESA1 | HTATIP | HTATIP1 | PLIP | TIP | TIP60 | cPLA2 | K(赖氨酸)乙酰转移酶5 | - | HPRD,BioGRID | 10720489 |
KCNIP3 | CSEN | DREAM | KCHIP3 | MGC18289 | KV通道相互作用蛋白3,calsenilin | - | HPRD,BioGRID | 12198160 |
MAPK14 | CSBP1 |CSBP2 |CSPB1 |Exip |mxi2 |PRKM14 |PRKM15 |RK |SAPK2A |p38 | p38ALPHA | 有丝分裂原激活的蛋白激酶14 | - | HPRD,BioGRID | 11377386 |
NR3C1 | GCCR |GCR |gr |grl | nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor) | - | HPRD,BioGRID | 7621901|8449898 |
NR4A2 | HZF-3 | NOT | NURR1 | RNR1 | TINUR | 核受体亚科4,A组,成员2 | CREB的未指定同工型与Nurr1启动子结合。 | 绑定 | 15961999 |
PDX1 | GSF |IDX-1 |IPF1 |IUF1 |Mody4 |PDX-1 |STF-1 | pancreatic and duodenal homeobox 1 | - | HPRD | 7505393 |
Prkaca | MGC102831 |MGC48865 |pkaca | protein kinase, cAMP-dependent, catalytic, alpha | 重构的复合物 | Biogrid | 11500364 |
RAB1A | DKFZP564B163 |Rab1 |YPT1 | RAB1A, member RAS oncogene family | Two-hybrid | Biogrid | 16169070 |
RBBP4 | NURF55 |RBAP48 | retinoblastoma binding protein 4 | Two-hybrid | Biogrid | 10866654 |
RECQL5 | FLJ90603 |RECQ5 | RecQ protein-like 5 | Two-hybrid | Biogrid | 16169070 |
RPS6KA4 | MSK2 |RSK-B | ribosomal protein S6 kinase, 90kDa, polypeptide 4 | - | HPRD,BioGRID | 9792677 |
RPS6KA5 | MGC1911 | MSK1 | MSPK1 | RLPK | ribosomal protein S6 kinase, 90kDa, polypeptide 5 | 生化活动 重构的复合物 |
Biogrid | 9687510|11500364 |
THRA | AR7 | EAR7 | ERB-T-1 | ERBA | ERBA1 | MGC000261 | MGC43240 | NR1A1 | THRA1 | THRA2 | c-ERBA-1 | thyroid hormone receptor, alpha (erythroblastic leukemia viral (v-erb-a) oncogene homolog, avian) | - | HPRD | 12805224 |
TP53 | FLJ92943 | LFS1 | TRP53 | p53 | 肿瘤蛋白p53 | 亲和力捕获 - 韦斯特恩 重构的复合物 |
Biogrid | 10848610 |
VIM | FLJ36605 | 波形蛋白 | Two-hybrid | Biogrid | 16169070 |
yy1 | DELTA | INO80S | NF-E1 | UCRBP | YIN-YANG-1 | yy1transcription factor | yy1interacts with CREB. | 绑定 | 7769693 |
Section V. Pathway annotation
路径名 | 路径大小 | # SZGR 2.0 genes in pathway | 信息 |
---|---|---|---|
KEGG抗原处理和演示 | 89 | 65 | All SZGR 2.0 genes in this pathway |
KEGG MELANOGENESIS | 102 | 80 | All SZGR 2.0 genes in this pathway |
KEGG加压素调节的水重吸收 | 44 | 30 | All SZGR 2.0 genes in this pathway |
KEGG HUNTINGTONS DISEASE | 185 | 109 | All SZGR 2.0 genes in this pathway |
KEGG PROSTATE CANCER | 89 | 75 | All SZGR 2.0 genes in this pathway |
Biocarta Cacam途径 | 16 | 11 | All SZGR 2.0 genes in this pathway |
Biocarta HCMV途径 | 17 | 16 | All SZGR 2.0 genes in this pathway |
Biocarta HIF途径 | 15 | 12 | All SZGR 2.0 genes in this pathway |
BIOCARTA MAPK PATHWAY | 87 | 68 | All SZGR 2.0 genes in this pathway |
BIOCARTA ARENRF2 PATHWAY | 13 | 9 | All SZGR 2.0 genes in this pathway |
Biocarta P38MAPK途径 | 40 | 31 | All SZGR 2.0 genes in this pathway |
Biocarta Dream Pathway | 14 | 13 | All SZGR 2.0 genes in this pathway |
Biocarta ERK5途径 | 18 | 15 | All SZGR 2.0 genes in this pathway |
BIOCARTA GPCR PATHWAY | 37 | 31 | All SZGR 2.0 genes in this pathway |
Biocarta Creb途径 | 27 | 25 | All SZGR 2.0 genes in this pathway |
Biocarta Carm1途径 | 13 | 11 | All SZGR 2.0 genes in this pathway |
ST DIFFERENTIATION PATHWAY IN PC12 CELLS | 45 | 35 | All SZGR 2.0 genes in this pathway |
ST ERK1 ERK2 MAPK途径 | 32 | 25 | All SZGR 2.0 genes in this pathway |
SIG PIP3在心脏肌周期中发出信号 | 67 | 54 | All SZGR 2.0 genes in this pathway |
st g alpha的路径 | 16 | 11 | All SZGR 2.0 genes in this pathway |
ST P38 MAPK PATHWAY | 37 | 28 | All SZGR 2.0 genes in this pathway |
ST GRANULE CELL SURVIVAL PATHWAY | 27 | 23 | All SZGR 2.0 genes in this pathway |
PID SMAD2 3核途径 | 82 | 63 | All SZGR 2.0 genes in this pathway |
PID LPA4 PATHWAY | 15 | 10 | All SZGR 2.0 genes in this pathway |
PID幼稚园 | 45 | 32 | All SZGR 2.0 genes in this pathway |
PID RET PATHWAY | 39 | 29 | All SZGR 2.0 genes in this pathway |
PID LKB1 PATHWAY | 47 | 37 | All SZGR 2.0 genes in this pathway |
PID HNF3B途径 | 45 | 37 | All SZGR 2.0 genes in this pathway |
PID REG GR PATHWAY | 82 | 60 | All SZGR 2.0 genes in this pathway |
PID ERBB1 DOWNSTREAM PATHWAY | 105 | 78 | All SZGR 2.0 genes in this pathway |
PID ATF2 PATHWAY | 59 | 43 | All SZGR 2.0 genes in this pathway |
PID AP1 PATHWAY | 70 | 60 | All SZGR 2.0 genes in this pathway |
PID P38 MK2途径 | 21 | 19 | All SZGR 2.0 genes in this pathway |
PID AR NONGENOMIC PATHWAY | 31 | 27 | All SZGR 2.0 genes in this pathway |
PID P38 ALPHA BETA DOWNSTREAM PATHWAY | 38 | 29 | All SZGR 2.0 genes in this pathway |
PID MYC REPRESS PATHWAY | 63 | 52 | All SZGR 2.0 genes in this pathway |
PID HIF1 TFPathway | 66 | 52 | All SZGR 2.0 genes in this pathway |
PID MAPK TRK PATHWAY | 34 | 31 | All SZGR 2.0 genes in this pathway |
PID PI3K PLC TRK途径 | 36 | 31 | All SZGR 2.0 genes in this pathway |
PID LYMPH ANGIOGENESIS PATHWAY | 25 | 16 | All SZGR 2.0 genes in this pathway |
REACTOME标记LLING BY NGF | 217 | 167 | All SZGR 2.0 genes in this pathway |
SCF套件的Reactome信号传导 | 78 | 59 | All SZGR 2.0 genes in this pathway |
REACTOME DEVELOPMENTAL BIOLOGY | 396 | 292 | All SZGR 2.0 genes in this pathway |
REACTOME DAG AND IP3 SIGNALING | 32 | 25 | All SZGR 2.0 genes in this pathway |
REACTOME TRIF MEDIATED TLR3 SIGNALING | 74 | 54 | All SZGR 2.0 genes in this pathway |
REACTOME标记LING BY ERBB4 | 90 | 67 | All SZGR 2.0 genes in this pathway |
REACTOME标记LING BY ERBB2 | 101 | 78 | All SZGR 2.0 genes in this pathway |
EGFR在癌症中的反应组信号传导 | 109 | 80 | All SZGR 2.0 genes in this pathway |
REACTOME PI3K EVENTS IN ERBB4 SIGNALING | 38 | 28 | All SZGR 2.0 genes in this pathway |
ERBB2信号中的Reactome PI3K事件 | 44 | 34 | All SZGR 2.0 genes in this pathway |
REACTOME DOWNSTREAM SIGNALING EVENTS OF B CELL RECEPTOR BCR | 97 | 66 | All SZGR 2.0 genes in this pathway |
REACTOME标记LING BY THE B CELL RECEPTOR BCR | 126 | 90 | All SZGR 2.0 genes in this pathway |
REACTOME NGF SIGNALLING VIA TRKA FROM THE PLASMA MEMBRANE | 137 | 105 | All SZGR 2.0 genes in this pathway |
FGFR的Reactome信号传导IN DISEASE | 127 | 88 | All SZGR 2.0 genes in this pathway |
REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | 205 | 136 | All SZGR 2.0 genes in this pathway |
Reactome核事件激酶和转录因子激活 | 24 | 20 | All SZGR 2.0 genes in this pathway |
REACTOME PI3K AKT ACTIVATION | 38 | 29 | All SZGR 2.0 genes in this pathway |
REACTOME GAB1 SIGNALOSOME | 38 | 29 | All SZGR 2.0 genes in this pathway |
REACTOME TRANSMISSION ACROSS CHEMICAL SYNAPSES | 186 | 155 | All SZGR 2.0 genes in this pathway |
REACTOME神经系统 | 279 | 221 | All SZGR 2.0 genes in this pathway |
REACTOME标记LING BY GPCR | 920 | 449 | All SZGR 2.0 genes in this pathway |
REACTOME OPIOID SIGNALLING | 78 | 56 | All SZGR 2.0 genes in this pathway |
REACTOME CA DEPENDENT EVENTS | 30 | 23 | All SZGR 2.0 genes in this pathway |
反应组神经递质受体结合和突触后细胞中的下游传播 | 137 | 110 | All SZGR 2.0 genes in this pathway |
REACTOME PLC BETA MEDIATED EVENTS | 43 | 32 | All SZGR 2.0 genes in this pathway |
REACTOME PKA MEDIATED PHOSPHORYLATION OF CREB | 18 | 14 | All SZGR 2.0 genes in this pathway |
REACTOME标记LING BY PDGF | 122 | 93 | All SZGR 2.0 genes in this pathway |
REACTOME DOWNSTREAM SIGNAL TRANSDUCTION | 95 | 76 | All SZGR 2.0 genes in this pathway |
Reactome Axon指导 | 251 | 188 | All SZGR 2.0 genes in this pathway |
Reactome NCAM信号传导,用于神经突的生长 | 64 | 49 | All SZGR 2.0 genes in this pathway |
REACTOME ACTIVATION OF NMDA RECEPTOR UPON GLUTAMATE BINDING AND POSTSYNAPTIC EVENTS | 37 | 32 | All SZGR 2.0 genes in this pathway |
REACTOME CREB PHOSPHORYLATION THROUGH THE ACTIVATION OF RAS | 27 | 23 | All SZGR 2.0 genes in this pathway |
反应组后NMDA受体激活事件 | 33 | 28 | All SZGR 2.0 genes in this pathway |
Reactome Creb通过CAMKII的激活来磷酸化 | 15 | 14 | All SZGR 2.0 genes in this pathway |
Reactome Pi 3K级联 | 56 | 39 | All SZGR 2.0 genes in this pathway |
REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR | 100 | 74 | All SZGR 2.0 genes in this pathway |
TLR级联反应组MAP激酶激活 | 50 | 37 | All SZGR 2.0 genes in this pathway |
Reactome磷脂酶C介导的级联 | 54 | 40 | All SZGR 2.0 genes in this pathway |
REACTOME MAPK TARGETS NUCLEAR EVENTS MEDIATED BY MAP KINASES | 30 | 24 | All SZGR 2.0 genes in this pathway |
REACTOME CIRCADIAN CLOCK | 53 | 40 | All SZGR 2.0 genes in this pathway |
Reactome Traf6在TLR7 8或9激活上介导的NFKB和MAP激酶的诱导 | 77 | 57 | All SZGR 2.0 genes in this pathway |
REACTOME NFKB AND MAP KINASES ACTIVATION MEDIATED BY TLR4 SIGNALING REPERTOIRE | 72 | 53 | All SZGR 2.0 genes in this pathway |
Reactome myd88 mal级联反应于质膜发起 | 83 | 63 | All SZGR 2.0 genes in this pathway |
Reactome先天免疫系统 | 279 | 178 | All SZGR 2.0 genes in this pathway |
Reactome激活的TLR4信号传导 | 93 | 69 | All SZGR 2.0 genes in this pathway |
REACTOME IMMUNE SYSTEM | 933 | 616 | All SZGR 2.0 genes in this pathway |
Reactome收费受体级联 | 118 | 84 | All SZGR 2.0 genes in this pathway |
REACTOME ADAPTIVE IMMUNE SYSTEM | 539 | 350 | All SZGR 2.0 genes in this pathway |
Reactome Pip3激活Akt信号传导 | 29 | 20 | All SZGR 2.0 genes in this pathway |
FGFR的Reactome信号传导 | 112 | 80 | All SZGR 2.0 genes in this pathway |
Wang LMO4靶向 | 372 | 227 | All SZGR 2.0 genes in this pathway |
GINESTIER乳腺癌ZNF217放大 | 78 | 48 | All SZGR 2.0 genes in this pathway |
OSWALD HEMATOPOIETIC STEM CELL IN COLLAGEN GEL DN | 275 | 168 | All SZGR 2.0 genes in this pathway |
莱茵所有糖皮质激素治疗DN | 362 | 238 | All SZGR 2.0 genes in this pathway |
Dittmer PTHLH靶向DN | 73 | 51 | All SZGR 2.0 genes in this pathway |
UDayakumar Med1靶向 | 135 | 82 | All SZGR 2.0 genes in this pathway |
Tien肠益生菌24小时DN | 214 | 133 | All SZGR 2.0 genes in this pathway |
ENK UV RESPONSE KERATINOCYTE DN | 485 | 334 | All SZGR 2.0 genes in this pathway |
GRAESSMANN APOPTOSIS BY DOXORUBICIN DN | 1781 | 1082 | All SZGR 2.0 genes in this pathway |
哈马凋亡通过Trail Up | 584 | 356 | All SZGR 2.0 genes in this pathway |
Turjanski MAPK7目标 | 8 | 8 | All SZGR 2.0 genes in this pathway |
HAEGERSTRAND RESPONSE TO IMATINIB | 9 | 5 | All SZGR 2.0 genes in this pathway |
RASHI RESPONSE TO IONIZING RADIATION 3 | 48 | 31 | All SZGR 2.0 genes in this pathway |
DACOSTA UV RESPONSE VIA ERCC3 DN | 855 | 609 | All SZGR 2.0 genes in this pathway |
DACOSTA UV RESPONSE VIA ERCC3 COMMON DN | 483 | 336 | All SZGR 2.0 genes in this pathway |
Sheth肝癌与TXNIP损失PAM6 | 46 | 32 | All SZGR 2.0 genes in this pathway |
SPIELMAN LYMPHOBLAST EUROPEAN VS ASIAN DN | 584 | 395 | All SZGR 2.0 genes in this pathway |
RICKMAN METASTASIS UP | 344 | 180 | All SZGR 2.0 genes in this pathway |
Koyama Sema3b靶向 | 292 | 168 | All SZGR 2.0 genes in this pathway |
BENPORATH MYC MAX TARGETS | 775 | 494 | All SZGR 2.0 genes in this pathway |
戈德拉斯体内平衡增殖 | 171 | 102 | All SZGR 2.0 genes in this pathway |
FLECHNER BIOPSY KIDNEY TRANSPLANT OK VS DONOR UP | 555 | 346 | All SZGR 2.0 genes in this pathway |
Affar YY1靶向DN | 234 | 137 | All SZGR 2.0 genes in this pathway |
HNE和TBH的Weigel氧化应激 | 60 | 42 | All SZGR 2.0 genes in this pathway |
WELCSH BRCA1 TARGETS UP | 198 | 132 | All SZGR 2.0 genes in this pathway |
Hedenfalk乳腺癌BRCA1与BRCA2 | 163 | 113 | All SZGR 2.0 genes in this pathway |
由FOXP3绑定的Marson刺激 | 1022 | 619 | All SZGR 2.0 genes in this pathway |
MARSON BOUND BY FOXP3 UNSTIMULATED | 1229 | 713 | All SZGR 2.0 genes in this pathway |
Hoshida肝癌生存DN | 113 | 76 | All SZGR 2.0 genes in this pathway |
由MYC约束 | 1103 | 714 | All SZGR 2.0 genes in this pathway |
lu eszh2靶向DN | 414 | 237 | All SZGR 2.0 genes in this pathway |
FEVR CTNNB1靶向DN | 553 | 343 | All SZGR 2.0 genes in this pathway |
通过p38部分的phong TNF响应 | 160 | 106 | All SZGR 2.0 genes in this pathway |
VANOEVELEN MYOGENESIS SIN3A TARGETS | 220 | 133 | All SZGR 2.0 genes in this pathway |
ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY | 1839 | 928 | All SZGR 2.0 genes in this pathway |
Section VI. microRNA annotation
miRNA family | Target position | miRNA ID | mirna seq | ||
---|---|---|---|---|---|
UTR开始 | UTR结束 | 匹配方法 | |||
mir-124.1 | 362 | 368 | M8 | HSA-MIR-124a | UUAAGGCACGCGGUGAAUGCCA |
miR-124/506 | 362 | 368 | 1A | hsa-miR-506 | UAAGGCACCCUUCUGAGUAGA |
HSA-MIR-124brain | UAAGGCACGCGGUGAAUGCC | ||||
miR-128 | 164 | 170 | 1A | hsa-miR-128a | ucacagugaaccggucuuuu |
hsa-miR-128b | ucacagugaaccggucuuc | ||||
miR-181 | 168 | 174 | M8 | hsa-miR-181abrain | AACAUUCAACGCUGUCGGUGAGU |
hsa-miR-181bSZ | AACAUUCAUUGCUGUCGGUGGG | ||||
hsa-miR-181cbrain | AACAUUCAACCUGUCGGUGAGU | ||||
hsa-miR-181dbrain | AACAUUCAUUGUUGUCGGUGGGUU | ||||
miR-182 | 455 | 462 | 1A,M8 | HSA-MIR-182 | UUUGGCAAUGGUAGAACUCACA |
miR-203.1 | 89 | 95 | M8 | hsa-miR-203 | ugaaauguuuaggaccacuag |
miR-25/32/92/363/367 | 435 | 441 | M8 | hsa-miR-25brain | CAUUGCACUUGUCUCGGUCUGA |
hsa-miR-32 | uauugcacauacuaaguugc | ||||
hsa-miR-92 | UAUUGCACUUGUCCCGGCCUG | ||||
HSA-MIR-367 | AAUUGCACUUUAGCAAUGGUGA | ||||
hsa-miR-92bSZ | uauugcacucgucccgcgcuc | ||||
miR-27 | 164 | 171 | 1A,M8 | HSA-MIR-27Abrain | uucacaguggcuaaguuccgc |
HSA-MIR-27Bbrain | UUCACAGUGGCUAAGUUCUGC | ||||
mir-323 | 402 | 408 | M8 | hsa-miR-323brain | GCACAUUACACGGUCGACCUCU |
miR-34b | 114 | 120 | M8 | hsa-miR-34b | UAGGCAGUGUCAUUAGCUGAUUG |
mir-450 | 108 | 114 | M8 | hsa-miR-450 | UUUUUGCGAUGUGUUCCUAAUA |
mir-500 | 433 | 440 | 1A,M8 | hsa-miR-500 | augcaccuggggaggagauucug |
mir-505 | 448 | 454 | M8 | hsa-miR-505 | gucaacuugcugguuccuc |
miR-96 | 456 | 462 | 1A | hsa-miR-96brain | uuuggcacuagcacauuuuugc |