Summary
GeneID 1499年
Symbol CTNNB1
同义词 CTNNB|MRD19|armadillo
描述 catenin beta 1
参考 MIM:116806|HGNC:HGNC:2514|Ensembl:ENSG00000168036|HPRD:00286|Vega:Otthumg00000131393
Gene type 蛋白质编码
Map location 3p21
Pascal p-value 0.636
胎儿β -0.341
DMG 1(# studies)
主持人 梭子基底神经节
Support INTRACELLULAR SIGNAL TRANSDUCTION
G2Cdb.humanNRC
G2Cdb.humanPSD
G2Cdb.humanPSP
COMPOSITESET
Darnell FMRP targets
Potential synaptic genes

Gene in Data Sources
Gene set name Method of gene set 描述 信息
CV:PGCnp Genome-wide Association Study GWAS
DMG:Jaffe_2016 全基因组DNA甲基化分析 This dataset includes 2,104 probes/CpGs associated with SZ patients (n=108) compared to 136 controls at Bonferroni-adjusted P < 0.05. 1
PMID:cooccur 高通量文献搜索 Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included.
文学 高通量文献搜索 与精神分裂症关键词共同存在:精神分裂症,精神分裂症,精神分裂症,精神分裂症 点击显示详细信息
Network Shortest path distance of core genes in the Human protein-protein interaction network Contribution to shortest path in PPI network: 1.9379

Section I. Genetics and epigenetics annotation

@Differentially methylated gene

Probe Chromosome Position Nearest gene p(dis) Beta (dis) fdr(dis) 学习
cg04180460 3 41240962 CTNNB1 4.47E-10 -0.013 8.02E-7 DMG:Jaffe_2016

@eQTL annotation

SNP ID Chromosome Position 主持人 Gene Entrez ID pvalue QVALUE TSS距离 eQTL type
RS55840513 3 41239045 CTNNB1 ENSG00000168036.12 6.36481E-6 0.05 2717 gtex_brain_putamen_basal
rs13075993 3 41260017 CTNNB1 ENSG00000168036.12 6.68607E-6 0.05 23689 gtex_brain_putamen_basal
RS3774369 3 41267525 CTNNB1 ENSG00000168036.12 6.73806E-6 0.05 31197 gtex_brain_putamen_basal
rs11564454 3 41274477 CTNNB1 ENSG00000168036.12 6.64323E-6 0.05 38149 gtex_brain_putamen_basal
rs3774371 3 41276166 CTNNB1 ENSG00000168036.12 6.67766E-6 0.05 39838 gtex_brain_putamen_basal
rs11564465 3 41277040 CTNNB1 ENSG00000168036.12 6.67766E-6 0.05 40712 gtex_brain_putamen_basal
rs150512515 3 41281409 CTNNB1 ENSG00000168036.12 6.67626E-6 0.05 45081 gtex_brain_putamen_basal
RS11129895 3 41283382 CTNNB1 ENSG00000168036.12 6.68625E-6 0.05 47054 gtex_brain_putamen_basal

第二节。转录组注释

一般基因表达(GTEX)

Not available

Gene expression during devlopment (BrainCloud)

脚注:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

脚注:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


第三节。基因本体论注释

Molecular function 去学期 证据 神经关键字 PubMed ID
GO:0004871 signal transducer activity NAS 10192393
GO:0003713 转录共激活因子活性 NAS 15572661
GO:0005198 structural molecule activity IEA -
GO:0008022 protein C-terminus binding IPI 10773885
GO:0050681 雄激素受体结合 NAS 15572661
Biological process 去学期 证据 神经关键字 PubMed ID
GO:0001837 epithelial to mesenchymal transition TAS 14679171
GO:0007155 细胞粘附 IEA -
GO:0006350 transcription IEA -
GO:0030521 androgen receptor signaling pathway NAS 15572661
GO:0045893 positive regulation of transcription, DNA-dependent NAS 15572661
GO:0060070 Wnt receptor signaling pathway through beta-catenin 我知道了 9601641
细胞分量 去学期 证据 神经关键字 PubMed ID
去:0005829 cytosol EXP 11955436|12000790|12820959
|15327769|16753179
GO:0005856 细胞骨架 TAS 7806582
GO:0005634 TAS 906540​​1
去:0005737 细胞质 IEA -
GO:0005886 plasma membrane TAS 10837025
GO:0016328 lateral plasma membrane IDA 12072559
GO:0030877 β-catenin破坏复合物 IDA 9601641|16188939

Section IV. Protein-protein interaction annotation

Interactors Aliases B Official full name B 实验 资源 PubMed ID
ACP1 haap |MGC111030 |MGC3499 acid phosphatase 1, soluble - HPRD,BioGRID 12438242
AJAP1 Mot8 |RP3-426F10.1 |Shrew-1 |Shrew1 adherens junctions associated protein 1 - HPRD,BioGRID 14595118
APC BTPS2 | DP2 | DP2.5 | DP3 | GS 腺瘤息肉大肠杆菌 APC interacts with Beta-catenin. BIND 15525529
APC BTPS2 | DP2 | DP2.5 | DP3 | GS 腺瘤息肉大肠杆菌 - HPRD 12000790
APC BTPS2 | DP2 | DP2.5 | DP3 | GS 腺瘤息肉大肠杆菌 β-catenin与APC相互作用。这种相互作用是建立在人β-catenin和小鼠APC之间的相互作用上的建模的。 BIND 15294866
APC BTPS2 | DP2 | DP2.5 | DP3 | GS 腺瘤息肉大肠杆菌 亲和力捕获 - 韦斯特恩
共晶结构
Far Western
重构的复合物
Biogrid 8259519|9286858
|11251183|11533658
|11707392|11712088
|11972058|12628243
APC2 APCL 腺瘤性息肉病2 - HPRD,BioGRID 9823329|10021369
ar AIS | DHTR | HUMARA | KD | NR3C4 | SBMA | SMAX1 | TFM androgen receptor - HPRD,BioGRID 11916967
arHGEF4 ASEF | ASEF1 | GEF4 | STM6 Rho guanine nucleotide exchange factor (GEF) 4 - HPRD 10947987
axin1 AXIN | MGC52315 轴1 亲和力捕获 - 韦斯特恩
重构的复合物
Two-hybrid
Biogrid 9734785|12805222
axin1 AXIN | MGC52315 轴1 - HPRD 12000790
axin2 AXIL | DKFZp781B0869 | MGC10366 | MGC126582 轴2 - HPRD,BioGRID 10966653
axin2 AXIL | DKFZp781B0869 | MGC10366 | MGC126582 轴2 beta-catenin interacts with the Axin2 promoter. BIND 15304487
BCL3 bcl4 |D19S37 B-cell CLL/lymphoma 3 CTNNB1 (beta-catenin) interacts with BCL3. BIND 15829968
BCL9 LGS | MGC131591 B-cell CLL/lymphoma 9 Beta-catenin interacts with LGS1. BIND 15294866
BOC - BOC同源物(鼠标) - HPRD,BioGRID 12634428
BTRC beta-trcp |fbw1a |fbxw1 |fbxw1a |FWD1 |MGC4643 |BTRCP |BTRCP1 |betatrcp beta-transducin repeat containing - HPRD 11818547|12114015
BTRC beta-trcp |fbw1a |fbxw1 |fbxw1a |FWD1 |MGC4643 |BTRCP |BTRCP1 |betatrcp beta-transducin repeat containing BTRC(beta-trcp1)与CTNNB1(β-catenin)相互作用。 BIND 15735746
CA9 CAIX | MN carbonic anhydrase IX - HPRD,BioGRID 14567991
CACYBP GIG5 | MGC87971 | PNAS-107 | RP1-102G20.6 | S100A6BP | SIP calcyclin binding protein 亲和力捕获 - 韦斯特恩 Biogrid 11389839
casp3 CPP32 | CPP32B | SCA-1 caspase 3, apoptosis-related cysteine peptidase - HPRD 9348292
CASP8 ALPS2B |cap4 |弗里斯|FLJ17672 |马赫|MCH5 |MGC78473 caspase 8, apoptosis-related cysteine peptidase - HPRD 12189238
CBY1 C22orf2 | CBY | HS508I15A | PGEA1 | PIGEA-14 | PIGEA14 | arb1 chibby homolog 1 (Drosophila) - HPRD,BioGRID 12712206
CCND1 BCL1 | D11S287E | PRAD1 | U21B31 cyclin D1 CTNNB1(β-catenin)与CCND1启动子相互作用。 BIND 15592430
CCND1 BCL1 | D11S287E | PRAD1 | U21B31 cyclin D1 - HPRD 11836555
CD82 4F9 | C33 | GR15 | IA4 | KAI1 | R2 | SAR2 | ST6 | TSPAN27 CD82 molecule CTNNB1(β-catenin)与CD82(KAI1)启动子相互作用。 BIND 15829968
CDH1 Arc-1 | CD324 | CDHE | ECAD | LCAM | UVO cadherin 1, type 1, E-cadherin (epithelial) 亲和力捕获 - 韦斯特恩
共晶结构
Biogrid 7542250|7876318
|7954478|8227214
|9233779|9405455
|9535896|9819408
|10381631|10772923
|11113628|11245482
|11254878|11348595
|11712088|11960376
|12061792|12169098
|12634428|12640114
|12830000|15023525
CDH1 Arc-1 | CD324 | CDHE | ECAD | LCAM | UVO cadherin 1, type 1, E-cadherin (epithelial) - HPRD 9512503
CDH1 Arc-1 | CD324 | CDHE | ECAD | LCAM | UVO cadherin 1, type 1, E-cadherin (epithelial) β-catenin与E-钙粘着蛋白相互作用。This interaction was modelled on a demonstrated interaction between human beta-catenin and mouse E-cadherin. BIND 15294866
CDH1 Arc-1 | CD324 | CDHE | ECAD | LCAM | UVO cadherin 1, type 1, E-cadherin (epithelial) E-cadherin interacts with beta-catenin. BIND 14706341
CDH1 Arc-1 | CD324 | CDHE | ECAD | LCAM | UVO cadherin 1, type 1, E-cadherin (epithelial) β-catenin与E-钙粘着蛋白相互作用。这种相互作用是基于未指定物种与人E-钙粘着蛋白的β-catenin之间的相互作用进行建模的。 BIND 15542433
CDH10 - cadherin 10, type 2 (T2-cadherin) 亲和力捕获 - 韦斯特恩 Biogrid 10861224
CDH11 CAD11 | CDHOB | OB | OSF-4 cadherin 11, type 2, OB-cadherin (osteoblast) - HPRD,BioGRID 10029089
CDH15 CDH14 |CDH3 |CDHM |MCAD 钙粘蛋白15,1型,M-辅助蛋白(肌管) - HPRD 9545347
CDH16 - 钙粘蛋白16,ksp-钙黏着蛋白 - HPRD 15023525
CDH17 CDH16 |FLJ26931 |HPT-1 |HPT1 |MGC138218 |MGC142024 cadherin 17, LI cadherin (liver-intestine) 亲和力捕获 - 韦斯特恩 Biogrid 15023525
CDH18 CDH14 |CDH14L | CDH24 | EY-CADHERIN 钙粘蛋白18,类型2 亲和力捕获 - 韦斯特恩 Biogrid 10207020
CDH2 CD325 | CDHN | CDw325 | NCAD cadherin 2, type 1, N-cadherin (neuronal) Affinity Capture-MS
亲和力捕获 - 韦斯特恩
Biogrid 12604612|14625392
CDH2 CD325 | CDHN | CDw325 | NCAD cadherin 2, type 1, N-cadherin (neuronal) - HPRD 12151522
CDH24 CDH11L | FLJ25193 | MGC131880 钙粘蛋白样24 - HPRD 12734196
CDH3 CDHP |HJMD |PCAD cadherin 3, type 1, P-cadherin (placental) - HPRD 8227214|10381631
|11889072|12800191
CDH3 CDHP |HJMD |PCAD cadherin 3, type 1, P-cadherin (placental) 亲和力捕获 - 韦斯特恩
Co-purification
Biogrid 10381631|10910767
CDH5 7B4 | CD144 | FLJ17376 cadherin 5, type 2 (vascular endothelium) - HPRD 12413882
CDH5 7B4 | CD144 | FLJ17376 cadherin 5, type 2 (vascular endothelium) 亲和力捕获 - 韦斯特恩 Biogrid 9434630|12003790
CDH6 KCAD cadherin 6, type 2, K-cadherin (fetal kidney) 亲和力捕获 - 韦斯特恩 Biogrid 10207020
CDH7 CDH7L1 cadherin 7, type 2 - HPRD,BioGRID 10861224
CDH8 Nbla04261 cadherin 8, type 2 - HPRD,BioGRID 9521872
CDH9 MGC125386 cadherin 9, type 2 (T1-cadherin) - HPRD,BioGRID 10861224
CDK5 PSSALRE cyclin-dependent kinase 5 - HPRD 11168528
CDK5R1 CDK5P35 | CDK5R | MGC33831 | NCK5A | p23 | p25 | p35 | p35nck5a cyclin-dependent kinase 5, regulatory subunit 1 (p35) 亲和力捕获 - 韦斯特恩
重构的复合物
Biogrid 11168528
CDON CDO | MGC111524 | ORCAM Cdon homolog (mouse) - HPRD,BioGRID 12634428
CEBPA C/EBP-Alpha |CEBP CCAAT/enhancer binding protein (C/EBP), alpha - HPRD,BioGRID 12861022
CHUK IKBKA | IKK-alpha | IKK1 | IKKA | NFKBIKA | TCF16 conserved helix-loop-helix ubiquitous kinase - HPRD,BioGRID 11527961
克雷布 CBP | KAT3A | RSTS CREB binding protein Phenotypic Enhancement Biogrid 15782138
CSNK2A1 CK2A1 | CKII 酪蛋白激酶2,α1多肽 - HPRD 12432063
CTNNA1 CAP102 |FLJ36832 catenin (cadherin-associated protein), alpha 1, 102kDa - HPRD,BioGRID 7706414
CTNNA1 CAP102 |FLJ36832 catenin (cadherin-associated protein), alpha 1, 102kDa Beta-catenin interacts with alpha-catenin. This interaction was modelled on a demonstrated interaction between human beta-catenin and mouse alpha-catenin. BIND 15294866
CTNNA3 MGC26194 |MGC75041 |VR22 catenin (cadherin-associated protein), alpha 3 - HPRD,BioGRID 11590244
ctnnbip1 我知道了AT | MGC15093 catenin, beta interacting protein 1 - HPRD,BioGRID 10898789
CTNND1 CAS | CTNND | KIAA0384 | P120CAS | P120CTN | p120 catenin (cadherin-associated protein), delta 1 亲和力捕获 - 韦斯特恩 Biogrid 9535896|11712088
DKK1 DKK-1 | SK dickkopf homolog 1 (Xenopus laevis) CTNNB1(β-连环蛋白)与DKK1舞会oter. BIND 15592430
DLG1 DKFZP761P0818 |DKFZP781B0426 |dlgh1 |SAP97 |DJ1061C18.1.1 |HDLG 圆盘,大型同源物1(果蝇) - HPRD 9512503
DLG5 KIAA0583 |LP-DLG |p-dlg5 |PDLG discs, large homolog 5 (Drosophila) - HPRD,BioGRID 12657639
DLGAP1 DAP-1 | DAP-1-ALPHA | DAP-1-BETA | GKAP | MGC88156 | SAPAP1 | hGKAP 圆盘,大(果蝇)同源物相关蛋白1 亲和力捕获 - 韦斯特恩 Biogrid 9286858
DSC3 CDHF3 | DSC | DSC1 | DSC2 | DSC4 | HT-CP Desmocollin 3 - HPRD,BioGRID 10769211
DVL1 DVL | MGC54245 dishevelled, dsh homolog 1 (Drosophila) - HPRD,BioGRID 10806215
DVL2 - Dish,DSH同源2(果蝇) 亲和力捕获 - 韦斯特恩 Biogrid 10806215
DVL3 KIAA0208 Dish,DSH同源3(果蝇) - HPRD,BioGRID 10806215
egfr ERBB | ERBB1 | HER1 | PIG61 | mENA 表皮生长因子受体(红细胞性白血病病毒(V-ERB-B)癌基因同源物,鸟类) - HPRD,BioGRID 9233779
ERBB2 CD340 | HER-2 | HER-2/neu | HER2 | NEU | NGL | TKR1 V-ERB-B2红细胞白血病病毒性癌基因同源2,神经/胶质母细胞瘤衍生的癌基因同源物(Avian) - HPRD,BioGRID 7702605
ESR1 DKFZP686N23123 |er |ESR |Esra |时代|NR3A1 雌激素受体1 亲和力捕获 - 韦斯特恩 Biogrid 15304487
ESR1 DKFZP686N23123 |er |ESR |Esra |时代|NR3A1 雌激素受体1 beta-catenin interacts with ER-alpha. BIND 15304487
EZR CVIL | CVL | DKFZp762H157 | FLJ26216 | MGC1584 | VIL2 ezrin - HPRD,BioGRID 10462524
FAS ALPS1A | APO-1 | APT1 | CD95 | FAS1 | FASTM | TNFRSF6 Fas (TNF receptor superfamily, member 6) CTNNB1 (beta-catenin) interacts with the FAS promoter. BIND 15829968
fer TYK3 fer (fps/fes related) tyrosine kinase 生化活动 Biogrid 12640114
FGF20 - fibroblast growth factor 20 CTNNB1(β-catenin)与FGF20启动子相互作用。 BIND 15592430
FHL2 AAG11 |Dral |Slim3 four and a half LIM domains 2 - HPRD,BioGRID 12466281
FOXO1 FKH1 | FKHR | FOXO1A forkhead box O1 beta-catenin interacts with FOXO1. This interaction was modelled on a demonstrated interaction between beta-catenin from an unspecified species and human FOXO1. BIND 15905404
FOXO3 AF6q21 | DKFZp781A0677 | FKHRL1 | FKHRL1P2 | FOXO2 | FOXO3A | MGC12739 | MGC31925 forkhead box O3 β-catenin与FOXO3A相互作用。 BIND 15905404
FOXO4 AFX | AFX1 | MGC120490 | MLLT7 forkhead box O4 β-catenin与FOXO4相互作用。这种相互作用是基于未指定物种的人类FoxO4和β-catenin之间的相互作用进行建模的。 BIND 15905404
FSCN2 RFSN |RP30 FASTIN同源物2,肌动蛋白捆绑蛋白,视网膜(purvuratus strongylocentrotus) - HPRD 11795941
FYN MGC45350 |SLK |syn FYN oncogene related to SRC, FGR, YES 生化活动 Biogrid 12640114
GNA13 G13 | MGC46138 guanine nucleotide binding protein (G protein), alpha 13 - HPRD 11136230
GRIK2 EAA4 |Glr6 |Gluk6 |glur6 |MGC74427 |MRT6 glutamate receptor, ionotropic, kainate 2 - HPRD 12151522
GRIN1 NMDA1 | NMDAR1 | NR1 谷氨酸受体,离子型,N-甲基D-天冬氨酸1 - HPRD 10862698
GSK3B - 糖原合酶激酶3β GSK3B (GSK3-Beta) interacts with and phosphorylates CTNNB1 (Beta-catenin). BIND 15829978
GSK3B - 糖原合酶激酶3β 亲和力捕获 - 韦斯特恩
生化活动
Biogrid 10330181|11251183
HNF1A HNF1 | LFB1 | MODY3 | TCF1 HNF1 homeobox A - HPRD 11266540|12107263
HNF4A FLJ39654 | HNF4 | HNF4a7 | HNF4a8 | HNF4a9 | MODY | MODY1 | NR2A1 | NR2A21 | TCF | TCF14 肝细胞核因子4,α 亲和力捕获 - 韦斯特恩
重构的复合物
Biogrid 12944908
IGFBP2 IBP2 |IGF-BP53 insulin-like growth factor binding protein 2, 36kDa CTNNB1(β-catenin)与IGFBP2启动子相互作用。 BIND 15735679
ikbkb FLJ40509 |ikk-beta |ikk2 |ikkb |MGC131801 |nfkbikb inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta - HPRD,BioGRID 11527961
IQGAP1 HUMORFA01 | KIAA0051 | SAR1 | p195 含有GTPase激活蛋白1的智商基序1 - HPRD,BioGRID 11734550 | 12446675
JUP arVD12 | CTNNG | DP3 | DPIII | PDGB | PKGB junction plakoglobin 亲和力捕获 - 韦斯特恩 Biogrid 9535896|11712088
KLK3 APS |KLK2A1 |PSA |HK3 kallikrein-related peptidase 3 CTNNB1(β-catenin)与KLK3(PSA)启动子相互作用。 BIND 15829968
lef1 DKFZp586H0919 | TCF1ALPHA lymphoid enhancer-binding factor 1 - HPRD 8757136|12556497
lef1 DKFZp586H0919 | TCF1ALPHA lymphoid enhancer-binding factor 1 亲和力捕获 - 韦斯特恩
Two-hybrid
Biogrid 8757136|12748295
|15684397
lef1 DKFZp586H0919 | TCF1ALPHA lymphoid enhancer-binding factor 1 LEF-1 interacts with Beta-catenin. This interaction was modeled on a demonstrated interaction between human LEF-1 and mouse Beta-catenin. BIND 15525529
LGALS9 HUAT | LGALS9A | MGC117375 | MGC125973 | MGC125974 lectin, galactoside-binding, soluble, 9 Affinity Capture-MS Biogrid 17353931
MAGI1 AIP3 | BAIAP1 | BAP1 | MAGI-1 | TNRC19 | WWP3 膜相关的鸟苷酸激酶,WW和PDZ结构域,含有1个 亲和力捕获 - 韦斯特恩
重构的复合物
Two-hybrid
Biogrid 10772923
MAGI2 acvrip1 |AIP1 |arip1 |magi-2 |SSCAM 膜相关的鸟苷酸激酶,WW和PDZ结构域,含有2个 - HPRD 11826105
MET auts9 |HGFR |RCCP2 |C-MET met proto-oncogene (hepatocyte growth factor receptor) 亲和力捕获 - 韦斯特恩 Biogrid 11254878
MUC1 CD227 |EMA |H23AG |mam6 |Pem |Pemt |棕榈 mucin 1, cell surface associated 亲和力捕获 - 韦斯特恩
重构的复合物
Biogrid 9139698|9819408
|11152665|11483589
|11877440|12618757
|12750561
MUC1 CD227 |EMA |H23AG |mam6 |Pem |Pemt |棕榈 mucin 1, cell surface associated MUC1interacts with beta-catenin. BIND 11483589
MUC1 CD227 |EMA |H23AG |mam6 |Pem |Pemt |棕榈 mucin 1, cell surface associated - HPRD 9139698|11152665
|11483589|11877440
MYO7A DFNA11 | DFNB2 | MYOVIIA | MYU7A | NSRD2 | USH1B myosin VIIA 亲和力捕获 - 韦斯特恩 Biogrid 11080149
Neurl2 C20orf163 | MGC125934 | MGC125935 | OZZ | Ozz-E3 神经同源2(果蝇) - HPRD 14960280
NFKB1 DKFZP686C01211 |EBP-1 |kbf1 |MGC54151 |nf-kappa-b |NFKB-P105 |NFKB-P50 |P105 B细胞中Kappa光多肽基因增强子的核因子1 NFKB1 (p50) interacts with CTNNB1 (beta-catenin). BIND 15829968
NLK DKFZP761G1211 |FLJ21033 线性激酶 亲和力捕获 - 韦斯特恩 Biogrid 12556497
NR5A1 AD4BP |ELP |ftz1 |ftzf1 |SF-1 |SF1 nuclear receptor subfamily 5, group A, member 1 - HPRD,BioGRID 12554773
NR5A2 B1F | B1F2 | CPF | FTF | FTZ-F1 | FTZ-F1beta | LRH-1 | hB1F | hB1F-2 nuclear receptor subfamily 5, group A, member 2 β-catenin与LRH-1相互作用。 BIND 15327767
PCSK1 BMIQ12 |Nec1 |PC1 |PC3 |SPC3 普罗蛋白转化酶枯草蛋白/KEXIN类型1 亲和力捕获 - 韦斯特恩 Biogrid 11113628
PECAM1 CD31 | PECAM-1 platelet/endothelial cell adhesion molecule - HPRD,BioGRID 10801826
PHB2 BAP | BCAP37 | Bap37 | MGC117268 | PNAS-141 | REA | p22 prohibitin 2 Affinity Capture-MS Biogrid 17353931
PIK3R1 grb1 |P85 |p85-alpha 磷酸肌醇3-激酶,调节亚基1(alpha) 重构的复合物 Biogrid 10477752
PIK3R1 grb1 |P85 |p85-alpha 磷酸肌醇3-激酶,调节亚基1(alpha) - HPRD 11716761
PIN1 DOD | UBL5 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 - HPRD,BioGRID 11533658
PKD1 PBP polycystic kidney disease 1 (autosomal dominant) Polycystin-1与β-catenin相互作用。 BIND 11113628
PKD1 PBP polycystic kidney disease 1 (autosomal dominant) - HPRD 11274246
PKP2 arVD9 plakophilin 2 - HPRD 11790773
PSEN1 AD3 | FAD | PS1 | S182 presenilin 1 亲和力捕获 - 韦斯特恩 Biogrid 9738936|9852041
|10341227
PSEN1 AD3 | FAD | PS1 | S182 presenilin 1 PS1与β-catenin相互作用。 BIND 9632714
PTN HARP | HBGF8 | HBNF | NEGF1 pleiotrophin 亲和力捕获 - 韦斯特恩 Biogrid 10706604
PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 - HPRD,BioGRID 12377785
PTPN11 BPTP3 | CFC | MGC14433 | NS1 | PTP-1D | PTP2C | SH-PTP2 | SH-PTP3 | SHP2 protein tyrosine phosphatase, non-receptor type 11 亲和力捕获 - 韦斯特恩 Biogrid 10681592
PTPN13 DKFZP686J1497 |FAP-1 |PNP1 |PTP-BAS |ptp-bl |ptp1e |ptpl1 |ptple protein tyrosine phosphatase, non-receptor type 13 (APO-1/CD95 (Fas)-associated phosphatase) 重构的复合物 Biogrid 10951583
PTPN14 MGC126803 | PEZ | PTP36 protein tyrosine phosphatase, non-receptor type 14 - HPRD,BioGRID 12808048
PTPRB DKFZp686E2262 | DKFZp686H15164 | FLJ44133 | HPTP-BETA | HPTPB | MGC142023 | MGC59935 | PTPB | R-PTP-BETA | VEPTP 蛋白酪氨酸磷酸酶,受体类型,B - HPRD 10706604
PTPRF FLJ43335 |FLJ45062 |FLJ45567 |拉尔 蛋白酪氨酸磷酸酶,受体类型,F 亲和力捕获 - 韦斯特恩
重构的复合物
Biogrid 9245795|11245482
PTPRF FLJ43335 |FLJ45062 |FLJ45567 |拉尔 蛋白酪氨酸磷酸酶,受体类型,F - HPRD 9245795|12095414
PTPRJ CD148 | DEP1 | HPTPeta | R-PTP-ETA | SCC1 蛋白酪氨酸磷酸酶,受体类型,J - HPRD,BioGRID 12370829
PTPRK DKFZP686C2268 |DKFZP779N1045 |R-PTP-KAPPA 蛋白酪氨酸磷酸酶,受体类型,K - HPRD,BioGRID 8663237
PTPRU FLJ37530 |FMI |glepp1 |PCP-2 |PTP |PTP-J |ptp-pi |ptppsi |PTPRO |PTPU2 | R-PTP-PSI | hPTP-J 蛋白酪氨酸磷酸酶,受体类型,U - HPRD,BioGRID 12501215
PTPRZ1 hptpz |hptpzeta |PTP-Zeta |PTP18 |ptprz |ptpz |RPTPB |rptpbeta |磷酸 蛋白酪氨酸磷酸酶,受体类型,Z多肽1 - HPRD,BioGRID 10706604
PYGO1 DKFZp547G0910 pygopus homolog 1 (Drosophila) - HPRD 11955446
RAB8B FLJ38125 RAB8B, member RAS oncogene family 亲和力捕获 - 韦斯特恩 Biogrid 12639940
RICS GC-GAP | GRIT | KIAA0712 | MGC1892 | p200RhoGAP | p250GAP Rho GTPase-activating protein - HPRD 12531901
ruvbl1 ECP54 |ino80h |NMP238 |Pontin |Pontin52 |RVB1 |tih1 |TIP49 |TIP49A RuvB-like 1 (E. coli) 亲和力捕获 - 韦斯特恩
重构的复合物
Biogrid 9843967
ruvbl2 CGI-46 | ECP51 | INO80J | REPTIN | RVB2 | TIH2 | TIP48 | TIP49B RuvB-like 2 (E. coli) CTNNB1 (beta-catenin) interacts with RUVBL2 (reptin). BIND 15829968
RXRA FLJ00280 |FLJ00318 |FLJ16020 |FLJ16733 |MGC102720 |NR2B1 retinoid X receptor, alpha 亲和力捕获 - 韦斯特恩 Biogrid 12771132
SGK1 SGK serum/glucocorticoid regulated kinase 1 CTNNB1 (beta-catenin) interacts with the SGK promoter. BIND 15735679
SKP1 EMC19 |MGC34403 |OCP-II |OCP2 |Skp1a |TCEB1L |P19A S-phase kinase-associated protein 1 亲和力捕获 - 韦斯特恩 Biogrid 11389839
SLC9A3R1 EBP50 |nherf |nherf1 |nphlop2 溶质载体家族9(钠/氢交换器),成员3调节器1 - HPRD,BioGRID 12830000
Smad2 JV18 | JV18-1 | MADH2 | MADR2 | MGC22139 | MGC34440 | hMAD-2 | hSMAD2 SMAD family member 2 - HPRD,BioGRID 12000714
Smad3 DKFZp586N0721 | DKFZp686J10186 | HSPC193 | HsT17436 | JV15-2 | MADH3 | MGC60396 SMAD family member 3 - HPRD,BioGRID 12000714
Smad4 DPC4 | JIP | MADH4 SMAD family member 4 - HPRD,BioGRID 12000714
Smad7 CRCS3 | FLJ16482 | MADH7 | MADH8 SMAD family member 7 亲和力捕获 - 韦斯特恩
Co-localization
Biogrid 15684397
SMARCA4 BAF190 | BRG1 | FLJ39786 | SNF2 | SNF2-BETA | SNF2L4 | SNF2LB | SWI2 | hSNF2b SWI/SNF相关,矩阵相关,染色质的肌动蛋白依赖性调节剂,亚家族A,成员4 - HPRD,BioGRID 11532957
TAX1BP3 TIP-1 Tax1 (human T-cell leukemia virus type I) binding protein 3 - HPRD 12874278
TBL1X EBI | SMAP55 | TBL1 跨多霉素(β)类似1倍连接 - HPRD,BioGRID 11389839
TCF3 e2a |itf1 |MGC129647 |MGC129648 |BHLHB21 转录因子3(E2A免疫球蛋白增强子结合因子E12/E47) - HPRD 12107263
TCF4 E2-2 | ITF2 | MGC149723 | MGC149724 | PTHS | SEF2 | SEF2-1 | SEF2-1A | SEF2-1B | bHLHb19 transcription factor 4 - HPRD 11713476|12861022
TCF4 E2-2 | ITF2 | MGC149723 | MGC149724 | PTHS | SEF2 | SEF2-1 | SEF2-1A | SEF2-1B | bHLHb19 transcription factor 4 亲和力捕获 - 韦斯特恩
共晶结构
重构的复合物
Biogrid 11713475|11713476
|12657632|15331612
TCF7L1 TCF-3 |TCF3 转录因子7样1(T特异性,HMG-box) 共晶结构 Biogrid 11136974
TCF7L1 TCF-3 |TCF3 转录因子7样1(T特异性,HMG-box) - HPRD 11266540
TCF7L2 TCF-4 | TCF4 转录因子7样2(T特异性,HMG-box) 亲和力捕获 - 韦斯特恩 Biogrid 12861022
TCF7L2 TCF-4 | TCF4 转录因子7样2(T特异性,HMG-box) - HPRD 11713476
TCF7L2 TCF-4 | TCF4 转录因子7样2(T特异性,HMG-box) TCF-4 interacts with Beta-catenin. BIND 15525529
TCF7L2 TCF-4 | TCF4 转录因子7样2(T特异性,HMG-box) Beta-catenin interacts with TCF4. BIND 15294866
TFAP2A AP-2 | AP-2alpha | AP2TF | BOFS | TFAP2 transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha) 亲和力捕获 - 韦斯特恩 Biogrid 15331612
TFF1 BCEI | D21S21 | HP1.A | HPS2 | pNR-2 | pS2 trefoil factor 1 β-catenin与PS2启动子相互作用。 BIND 15304487
TGFBR1 AAT5 |ACVRLK4 |ALK-5 |Alk5 |LDS1A |LDS2A |SKR4 |TGFR-1 转化生长因子,β受体1 - HPRD 12000714
TGFBR2 AAT3 |FAA3 |LDS1B |LDS2B |MFS2 |riic |taad2 |TGFR-2 |TGFBETA-RII transforming growth factor, beta receptor II (70/80kDa) 亲和力捕获 - 韦斯特恩 Biogrid 12000714
USP9X DFFRX | FAF | FAM ubiquitin specific peptidase 9, X-linked - HPRD,BioGRID 10620020
VCL CMD1W |MVCL vinculin 亲和力捕获 - 韦斯特恩 Biogrid 9405455
VEZT DKFZp761C241 | VEZATIN Vezatin,粘附连接跨膜蛋白 - HPRD,BioGRID 11080149


Section V. Pathway annotation

Pathway name 路径大小 #szgr 2.0基因 信息
KEGG WNT SIGNALING PATHWAY 151 112 All SZGR 2.0 genes in this pathway
kegg焦点粘附 201 138 All SZGR 2.0 genes in this pathway
kegg粘附交界处 75 53 All SZGR 2.0 genes in this pathway
kegg thright连接点 134 86 All SZGR 2.0 genes in this pathway
KEGG LEUKOCYTE TRANSENDOTHELIAL MIGRATION 118 78 All SZGR 2.0 genes in this pathway
kegg黑色素发生 102 80 All SZGR 2.0 genes in this pathway
KEGG致病性大肠杆菌感染 59 36 All SZGR 2.0 genes in this pathway
KEGG PATHWAYS IN CANCER 328 259 All SZGR 2.0 genes in this pathway
KEGG COLORECTAL CANCER 62 47 All SZGR 2.0 genes in this pathway
KEGG ENDOMETRIAL CANCER 52 45 All SZGR 2.0 genes in this pathway
KEGG PROSTATE CANCER 89 75 All SZGR 2.0 genes in this pathway
KEGG THYROID CANCER 29 26 All SZGR 2.0 genes in this pathway
KEGG BASAL CELL CARCINOMA 55 44 All SZGR 2.0 genes in this pathway
KEGG ARRHYTHMOGENIC RIGHT VENTRICULAR CARDIOMYOPATHY ARVC 76 59 All SZGR 2.0 genes in this pathway
BIOCARTA ALK PATHWAY 37 29 All SZGR 2.0 genes in this pathway
BIOCARTA CELL2CELL PATHWAY 14 11 All SZGR 2.0 genes in this pathway
BIOCARTA GSK3 PATHWAY 27 26 All SZGR 2.0 genes in this pathway
BIOCARTA PITX2 PATHWAY 15 15 All SZGR 2.0 genes in this pathway
Biocarta PS1途径 14 14 All SZGR 2.0 genes in this pathway
BIOCARTA TFF PATHWAY 21 15 All SZGR 2.0 genes in this pathway
BIOCARTA WNT PATHWAY 26 24 All SZGR 2.0 genes in this pathway
WNT SIGNALING 89 71 All SZGR 2.0 genes in this pathway
ST WNT BETA CATENIN PATHWAY 34 28 All SZGR 2.0 genes in this pathway
PID Beta catenin deg途径 18 17 All SZGR 2.0 genes in this pathway
PID MET PATHWAY 80 60 All SZGR 2.0 genes in this pathway
PID AR PATHWAY 61 46 All SZGR 2.0 genes in this pathway
PID ARF6 TRAFFICKING PATHWAY 49 34 All SZGR 2.0 genes in this pathway
PID PS1途径 46 39 All SZGR 2.0 genes in this pathway
PID ILK PATHWAY 45 32 All SZGR 2.0 genes in this pathway
PID NECTIN PATHWAY 30 20 All SZGR 2.0 genes in this pathway
PID CDC42途径 70 51 All SZGR 2.0 genes in this pathway
PID WNT CANONICAL PATHWAY 20 18 All SZGR 2.0 genes in this pathway
PID FOXO PATHWAY 49 43 All SZGR 2.0 genes in this pathway
pid ajdiss 2Pathway 48 38 All SZGR 2.0 genes in this pathway
PID ECADHERIN NASCENT AJ PATHWAY 39 33 All SZGR 2.0 genes in this pathway
PID AP1 PATHWAY 70 60 All SZGR 2.0 genes in this pathway
PID ECADHERIN KERATINOCYTE PATHWAY 21 19 All SZGR 2.0 genes in this pathway
PIDβCATENIN NUC PATHWAY 80 60 All SZGR 2.0 genes in this pathway
PID Ecadherin稳定途径 42 34 All SZGR 2.0 genes in this pathway
PID VEGFR1 2 PATHWAY 69 57 All SZGR 2.0 genes in this pathway
PID NCADHERIN PATHWAY 33 32 All SZGR 2.0 genes in this pathway
PID Rac1途径 54 37 All SZGR 2.0 genes in this pathway
PID TGFBR PATHWAY 55 38 All SZGR 2.0 genes in this pathway
REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS 40 26 All SZGR 2.0 genes in this pathway
Wnt的Reactome信号传导 65 41 All SZGR 2.0 genes in this pathway
REACTOME CTNNB1 PHOSPHORYLATION CASCADE 16 11 All SZGR 2.0 genes in this pathway
REACTOME DEVELOPMENTAL BIOLOGY 396 292 All SZGR 2.0 genes in this pathway
Reactome细胞通信 120 77 All SZGR 2.0 genes in this pathway
REACTOME APOPTOTIC CLEAVAGE OF CELL ADHESION PROTEINS 12 6 All SZGR 2.0 genes in this pathway
REACTOME INTEGRATION OF ENERGY METABOLISM 120 84 All SZGR 2.0 genes in this pathway
胰岛素分泌的反应组调节 93 65 All SZGR 2.0 genes in this pathway
Reactome Adherens连接相互作用 27 20 All SZGR 2.0 genes in this pathway
REACTOME CELL CELL JUNCTION ORGANIZATION 56 31 All SZGR 2.0 genes in this pathway
REACTOME CELL JUNCTION ORGANIZATION 78 43 All SZGR 2.0 genes in this pathway
反应组肌发生 28 20 All SZGR 2.0 genes in this pathway
REACTOME INCRETIN SYNTHESIS SECRETION AND INACTIVATION 22 14 All SZGR 2.0 genes in this pathway
REACTOME SYNTHESIS SECRETION AND INACTIVATION OF GLP1 19 12 All SZGR 2.0 genes in this pathway
反应组凋亡 148 94 All SZGR 2.0 genes in this pathway
REACTOME APOPTOTIC EXECUTION PHASE 54 37 All SZGR 2.0 genes in this pathway
家长mtor信号向上 567 375 All SZGR 2.0 genes in this pathway
Onken紫菜叶黑色素瘤DN 526 357 All SZGR 2.0 genes in this pathway
Wang LMO4靶向 372 227 All SZGR 2.0 genes in this pathway
DITTMER PTHLH TARGETS UP 112 68 All SZGR 2.0 genes in this pathway
KOINUMA COLON CANCER MSI UP 16 11 All SZGR 2.0 genes in this pathway
GRAESSMANN APOPTOSIS BY DOXORUBICIN DN 1781 1082 All SZGR 2.0 genes in this pathway
Hwang前列腺癌标记 28 19 All SZGR 2.0 genes in this pathway
LASTOWSKA NEUROBLASTOMA COPY NUMBER DN 800 473 All SZGR 2.0 genes in this pathway
BREUHAHN GROWTH FACTOR SIGNALING IN LIVER CANCER 22 19 All SZGR 2.0 genes in this pathway
SCHEIDEREIT IKK TARGETS 18 15 All SZGR 2.0 genes in this pathway
SCHEIDEREIT IKK INTERACTING PROTEINS 58 45 All SZGR 2.0 genes in this pathway
LOPEZ MBD TARGETS 957 597 All SZGR 2.0 genes in this pathway
科林PILOCYTIC星形细胞瘤和胶质母细胞瘤DN 28 21 All SZGR 2.0 genes in this pathway
gotzmann上皮到间充质过渡dn 206 136 All SZGR 2.0 genes in this pathway
AMIT EGF RESPONSE 480 HELA 164 118 All SZGR 2.0 genes in this pathway
MAGRANGEAS MULTIPLE MYELOMA IGLL VS IGLK DN 24 18 All SZGR 2.0 genes in this pathway
CROMER METASTASIS UP 79 46 All SZGR 2.0 genes in this pathway
HNE和H2O2的Weigel氧化应激 39 29 All SZGR 2.0 genes in this pathway
Verrecchia对TGFB1 C5的反应 21 11 All SZGR 2.0 genes in this pathway
MA PITUITARY FETAL VS ADULT UP 29 21 All SZGR 2.0 genes in this pathway
VERRECCHIA DELAYED RESPONSE TO TGFB1 39 26 All SZGR 2.0 genes in this pathway
Lee衰老的新皮层 89 59 All SZGR 2.0 genes in this pathway
ZHOU TNF SIGNALING 30MIN 54 36 All SZGR 2.0 genes in this pathway
JACKSON DNMT1 TARGETS UP 77 57 All SZGR 2.0 genes in this pathway
Hedenfalk乳腺癌BRCA1与BRCA2 163 113 All SZGR 2.0 genes in this pathway
JI对FSH的响应 74 56 All SZGR 2.0 genes in this pathway
KYNG RESPONSE TO H2O2 71 42 All SZGR 2.0 genes in this pathway
Creighton内分泌疗法抗性5 482 296 All SZGR 2.0 genes in this pathway
WALLACE PROSTATE CANCER RACE UP 299 167 All SZGR 2.0 genes in this pathway
HONMA DOCETAXEL RESISTANCE 34 23 All SZGR 2.0 genes in this pathway
级结肠癌 871 505 All SZGR 2.0 genes in this pathway
GRESHOCK CANCER COPY NUMBER UP 323 240 All SZGR 2.0 genes in this pathway
ZAIDI OSTEOBLAST TRANSCRIPTION FACTORS 14 12 All SZGR 2.0 genes in this pathway
HAN SATB1 TARGETS DN 442 275 All SZGR 2.0 genes in this pathway
Hsiao家政基因 389 245 All SZGR 2.0 genes in this pathway
MILI PSEUDOPODIA CHEMOTAXIS DN 457 302 All SZGR 2.0 genes in this pathway
HOSHIDA LIVER CANCER SUBCLASS S2 115 74 All SZGR 2.0 genes in this pathway
中村掺杂早期 66 44 All SZGR 2.0 genes in this pathway
NAKAMURA ADIPOGENESIS LATE UP 104 67 All SZGR 2.0 genes in this pathway
JOHNSTONE PARVB TARGETS 3 DN 918 550 All SZGR 2.0 genes in this pathway
FEVR CTNNB1 TARGETS DN 553 343 All SZGR 2.0 genes in this pathway
Krieg缺氧不是通过KDM3A 770 480 All SZGR 2.0 genes in this pathway
GUILLAUMOND KLF10 TARGETS DN 30 15 All SZGR 2.0 genes in this pathway
rao由SALL4同工型B绑定 517 302 All SZGR 2.0 genes in this pathway

Section VI. microRNA annotation

miRNA family Target position mirna id mirna seq
UTR开始 UTR结束 匹配方法
miR-139 349 355 1A HSA-MIR-139 ucuacagugcacgugucu
miR-141/200a 697 703 1A HSA-MIR-141 UAACACUGUCUGGUAAAGAUGG
hsa-miR-200a UAACACUGUCUGGUAACGAUGU
miR-217 669 675 1A hsa-miR-217 UACUGCAUCAGGAACUGAUUGGAU
mir-320 239 245 m8 HSA-MIR-320 aaaagcugggugagaggggcgaa
miR-381 829 835 1A HSA-MIR-381 UAUACAAGGGCAAGCUCUCUGU