Gene Page:SLC36A2

Summary?
GeneID 153201
Symbol SLC36A2
Synonyms PAT2|TRAMD1
Description solute carrier family 36 member 2
Reference MIM:608331|HGNC:HGNC:18762|Ensembl:ENSG00000186335|HPRD:12215|Vega:OTTHUMG00000130129
Gene type protein-coding
Map location 5q33.1
Pascal p-value 0.323

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:PGCnp Genome-wide Association Study GWAS
PMID:cooccur High-throughput literature-search Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included.
GSMA_I Genome scan meta-analysis Psr: 0.0032
GSMA_IIE Genome scan meta-analysis (European-ancestry samples) Psr: 0.01718
GSMA_IIA Genome scan meta-analysis (All samples) Psr: 0.00459
Literature High-throughput literature-search Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias Click to show details

Section I. Genetics and epigenetics annotation


Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section III. Gene Ontology annotation

Molecular function 去后m Evidence Neuro keywords PubMed ID
GO:0005280 hydrogen:amino acid symporter activity IEA -
GO:0015193 L-proline transmembrane transporter activity IEA -
GO:0015187 glycine transmembrane transporter activity IEA -
GO:0015180 L-alanine transmembrane transporter activity IEA -
Biological process 去后m Evidence Neuro keywords PubMed ID
GO:0015816 甘氨酸运输 IEA -
GO:0015824 proline transport IEA -
GO:0015808 L-alanine transport IEA -
GO:0015992 proton transport IEA -
Cellular component 去后m Evidence Neuro keywords PubMed ID
GO:0005737 cytoplasm IEA -
GO:0016021 integral to membrane IEA -
GO:0005886 plasma membrane IEA -

Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE 31 21 All SZGR 2.0 genes in this pathway
REACTOME TRANSMEMBRANE TRANSPORT OF SMALL MOLECULES 413 270 All SZGR 2.0 genes in this pathway
REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT 241 157 All SZGR 2.0 genes in this pathway
REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES 94 65 All SZGR 2.0 genes in this pathway
REACTOME AMINO ACID AND OLIGOPEPTIDE SLC TRANSPORTERS 49 36 All SZGR 2.0 genes in this pathway
ZWANG CLASS 1 TRANSIENTLY INDUCED BY EGF 516 308 All SZGR 2.0 genes in this pathway

Section VI. microRNA annotation

miRNA family Target position miRNA ID miRNA seq
UTR start UTR end Match method
miR-380-5p 1698 1704 1A hsa-miR-380-5p UGGUUGACCAUAGAACAUGCGC
hsa-miR-563 AGGUUGACAUACGUUUCCC