Gene Page:FAM208A
Summary?
| GeneID | 23272 |
| Symbol | FAM208A |
| Synonyms | C3orf63|RAP140|se89-1 |
| Description | family with sequence similarity 208 member A |
| Reference | MIM:616493|HGNC:HGNC:30314|Ensembl:ENSG00000163946|HPRD:10183|Vega:OTTHUMG00000158827 |
| Gene type | protein-coding |
| Map location | 3p14.3 |
| Pascal p-value | 0.018 |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 - 26conception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| SMNDC1 | 0.96 | 0.95 |
| PPP1CC | 0.95 | 0.93 |
| MATR3 | 0.94 | 0.96 |
| MCPH1 | 0.94 | 0.94 |
| ZCCHC7 | 0.94 | 0.91 |
| CEBPZ | 0.94 | 0.95 |
| NARG1 | 0.94 | 0.95 |
| COIL | 0.94 | 0.94 |
| ZNF569 | 0.94 | 0.95 |
| GTF3C3 | 0.94 | 0.91 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| MT-CO2 | -0.69 | -0.87 |
| AF347015.31 | -0.69 | -0.86 |
| AF347015.33 | -0.68 | -0.85 |
| AF347015.27 | -0.67 | -0.83 |
| MT-CYB | -0.67 | -0.84 |
| AF347015.8 | -0.66 | -0.85 |
| FXYD1 | -0.66 | -0.84 |
| IFI27 | -0.66 | -0.83 |
| AF347015.15 | -0.65 | -0.84 |
| HLA-F | -0.65 | -0.77 |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| PYEON HPV POSITIVE TUMORS UP | 98 | 47 | All SZGR 2.0 genes in this pathway |
| FRASOR TAMOXIFEN RESPONSE UP | 51 | 36 | All SZGR 2.0 genes in this pathway |
| DEURIG T CELL PROLYMPHOCYTIC LEUKEMIA DN | 320 | 184 | All SZGR 2.0 genes in this pathway |
| DODD NASOPHARYNGEAL CARCINOMA DN | 1375 | 806 | All SZGR 2.0 genes in this pathway |
| HAMAI APOPTOSIS VIA TRAIL UP | 584 | 356 | All SZGR 2.0 genes in this pathway |
| SCHLOSSER SERUM RESPONSE DN | 712 | 443 | All SZGR 2.0 genes in this pathway |
| YORDY RECIPROCAL REGULATION BY ETS1 AND SP100 DN | 87 | 48 | All SZGR 2.0 genes in this pathway |
| DACOSTA UV RESPONSE VIA ERCC3 DN | 855 | 609 | All SZGR 2.0 genes in this pathway |
| DACOSTA UV RESPONSE VIA ERCC3 COMMON DN | 483 | 336 | All SZGR 2.0 genes in this pathway |
| FLECHNER PBL KIDNEY TRANSPLANT REJECTED VS OK UP | 63 | 48 | All SZGR 2.0 genes in this pathway |
| BLALOCK ALZHEIMERS DISEASE INCIPIENT UP | 390 | 242 | All SZGR 2.0 genes in this pathway |
| CUI TCF21 TARGETS 2 DN | 830 | 547 | All SZGR 2.0 genes in this pathway |
| BLALOCK ALZHEIMERS DISEASE UP | 1691 | 1088 | All SZGR 2.0 genes in this pathway |
| LU AGING BRAIN UP | 262 | 186 | All SZGR 2.0 genes in this pathway |