Gene Page:NEGR1
概括?
基因 | 257194 |
象征 | NEGR1 |
Synonyms | DMML2433|IGLON4|KILON|Ntra |
Description | neuronal growth regulator 1 |
Reference | MIM:613173|HGNC:HGNC:17302|Ensembl:ENSG00000172260|HPRD:14820| |
Gene type | protein-coding |
Map location | 1p31.1 |
Pascal p-value | 3.174E-4 |
Fetal beta | -1.07 |
DMG | 1 (# studies) |
Support | G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS G2Cdb.human_clathrin g2cdb.human_synaptosom COMPOSITESET |
数据源中的基因
Gene set name | Method of gene set | Description | Info |
---|---|---|---|
CV:GWAScat | Genome-wide Association Studies | 该数据集包括与精神分裂症相关的560个SNP。总共将486个基因映射到50kb内的这些SNP。 | |
CV:PGC128 | Genome-wide Association Study | A multi-stage schizophrenia GWAS of up to 36,989 cases and 113,075 controls. Reported by the Schizophrenia Working Group of PGC. 128 independent associations spanning 108 loci | |
CV:PGCnp | Genome-wide Association Study | GWAS | |
DMG:Nishioka_2013 | Genome-wide DNA methylation analysis | The authors investigated the methylation profiles of DNA in peripheral blood cells from 18 patients with first-episode schizophrenia (FESZ) and from 15 normal controls. | 1 |
PMID:cooccur | High-throughput literature-search | Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included. | |
GSMA_IIA | Genome scan meta-analysis (All samples) | Psr: 0.02692 | |
文学 | High-throughput literature-search | 与精神分裂症Co-occurance关键词:schizophrenia,schizophrenic,schizophrenias | 点击to show details |
第一节遗传学和表观遗传学注释
CV:PGC128
SNP ID | Chromosome | Position | Allele | P | 功能 | Gene | Up/Down Distance |
---|---|---|---|---|---|---|---|
RS12129573 | chr1 | 73768366 | AC | 2.346E-10 | 基因间 | NEGR1,LINC01360 | dist=1020089;dist=3487 |
Differentially methylated gene
Probe | Chromosome | Position | Nearest gene | P (dis) | Beta (dis) | FDR (dis) | Study |
---|---|---|---|---|---|---|---|
cg04645342 | 1 | 72748124 | NEGR1 | -0.024 | 0.58 | DMG:Nishioka_2013 |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
脚注:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
脚注:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section III. Gene Ontology annotation
分子功能 | GO term | Evidence | Neuro keywords | PubMed ID |
---|---|---|---|---|
GO:0005515 | protein binding | IEA | - | |
生物过程 | GO term | Evidence | Neuro keywords | PubMed ID |
GO:0007155 | cell adhesion | IEA | - | |
Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
GO:0005886 | plasma membrane | IEA | - | |
GO:0031225 | anchored to membrane | IEA | - |
V.途径注释
Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
---|---|---|---|
KEGG CELL ADHESION MOLECULES CAMS | 134 | 93 | 该途径中的所有SZGR 2.0基因 |
HORIUCHI WTAP TARGETS DN | 310 | 188 | 该途径中的所有SZGR 2.0基因 |
NUP98 HOXA9 Fusion 3D的Takeda目标 | 182 | 110 | 该途径中的所有SZGR 2.0基因 |
TAKEDA TARGETS OF NUP98 HOXA9 FUSION 8D UP | 157 | 91 | 该途径中的所有SZGR 2.0基因 |
TAKEDA TARGETS OF NUP98 HOXA9 FUSION 10D UP | 194 | 122 | 该途径中的所有SZGR 2.0基因 |
TAKEDA TARGETS OF NUP98 HOXA9 FUSION 16D UP | 175 | 108 | 该途径中的所有SZGR 2.0基因 |
JAATINEN HEMATOPOIETIC STEM CELL UP | 316 | 190 | 该途径中的所有SZGR 2.0基因 |
GAUSSMANN MLL AF4 FUSION TARGETS G UP | 238 | 135 | 该途径中的所有SZGR 2.0基因 |
MANTOVANI VIRAL GPCR SIGNALING UP | 86 | 54 | 该途径中的所有SZGR 2.0基因 |
Schaeffer前列腺开发48小时DN | 428 | 306 | 该途径中的所有SZGR 2.0基因 |
PASQUALUCCI LYMPHOMA BY GC STAGE UP | 283 | 177 | 该途径中的所有SZGR 2.0基因 |
BENPORATH ES WITH H3K27ME3 | 1118 | 744 | 该途径中的所有SZGR 2.0基因 |
WANG SMARCE1 TARGETS UP | 280 | 183 | 该途径中的所有SZGR 2.0基因 |
KONDO EZH2 TARGETS | 245 | 148 | 该途径中的所有SZGR 2.0基因 |
营地结肠癌拷贝编号DN | 74 | 34 | 该途径中的所有SZGR 2.0基因 |
GOBERT OLIGODENDROCYTE DIFFERENTIATION DN | 1080 | 713 | 该途径中的所有SZGR 2.0基因 |
WAKABAYASHI ADIPOGENESIS PPARG RXRA BOUND 36HR | 152 | 88 | 该途径中的所有SZGR 2.0基因 |
WAKABAYASHI ADIPOGENESIS PPARG RXRA BOUND 8D | 882 | 506 | 该途径中的所有SZGR 2.0基因 |
WANG MLL TARGETS | 289 | 188 | 该途径中的所有SZGR 2.0基因 |
ZWANG TRANSIENTLY UP BY 2ND EGF PULSE ONLY | 1725 | 838 | 该途径中的所有SZGR 2.0基因 |
Section VI. microRNA annotation
mirna家族 | Target position | mirna id | miRNA seq | ||
---|---|---|---|---|---|
UTR start | UTR end | Match method | |||
miR-101 | 3666 | 3672 | m8 | HSA-MIR-101 | UACAGUACUGUGAUAACUGAAG |
mir-122 | 2053 | 2060 | 1A,m8 | hsa-miR-122a | UGGAGUGUGACAAUGGUGUUUGU |
miR-124.1 | 3562 | 3569 | 1A,m8 | hsa-miR-124a | UUAAGGCACGCGGUGAAUGCCA |
miR-124/506 | 3562 | 3568 | 1A | hsa-miR-506 | UAAGGCACCCUUCUGAGUAGA |
hsa-miR-124brain | UAAGGCACGCGGUGAAUGCC | ||||
hsa-miR-506 | UAAGGCACCCUUCUGAGUAGA | ||||
hsa-miR-124brain | UAAGGCACGCGGUGAAUGCC | ||||
mir-135 | 1560年 | 1566年 | m8 | hsa-miR-135a | UAUGGCUUUUUAUUCCUAUGUGA |
hsa-miR-135b | Uauggcuuuucauuccuaugug | ||||
mir-145 | 3599 | 3605 | 1A | hsa-miR-145 | guccaguuucccaggaaucccuu |
miR-181 | 2524 | 2531 | 1A,m8 | HSA-MIR-181Abrain | aacauucaacgcugucggugagu |
HSA-MIR-181BSZ | AACAUUCAUUGCUGUCGGUGGG | ||||
HSA-MIR-181Cbrain | AACAUUCAACCUGUCGGUGAGU | ||||
HSA-MIR-181Dbrain | AACAUUCAUUGUUGUCGGUGGGUU | ||||
miR-186 | 365 | 372 | 1A,m8 | hsa-miR-186 | CAAAGAAUUCUCCUUUUGGGCUU |
miR-200bc/429 | 3526 | 3532 | m8 | HSA-MIR-200B | UAAUACUGCCUGGUAAUGAUGAC |
HSA-MIR-200C | UAAUACUGCCGGGUAAUGAUGG | ||||
hsa-miR-429 | UAAUACUGUCUGGUAAAACCGU | ||||
HSA-MIR-200B | UAAUACUGCCUGGUAAUGAUGAC | ||||
HSA-MIR-200C | UAAUACUGCCGGGUAAUGAUGG | ||||
hsa-miR-429 | UAAUACUGUCUGGUAAAACCGU | ||||
miR-203.1 | 2694 | 2700 | 1A | HSA-MIR-203 | UGAAAUGUUUAGGACCACUAG |
mir-25/32/92/363/367 | 377 | 383 | 1A | hsa-miR-25brain | Cauugcacuugucucggucuga |
hsa-miR-32 | UAUUGCACAUUACUAAGUUGC | ||||
hsa-miR-92 | UAUUGCACUUGUCCCGGCCUG | ||||
hsa-miR-367 | Aauugcacuuuagcaaugga | ||||
hsa-miR-92bSZ | UAUUGCACUCGUCCCGGCCUC | ||||
miR-29 | 2085 | 2092 | 1A,m8 | hsa-miR-29aSZ | UAGCACCAUCUGAAAUCGGUU |
hsa-miR-29bSZ | UAGCACCAUUUGAAAUCAGUGUU | ||||
hsa-miR-29cSZ | UAGCACCAUUUGAAAUCGGU | ||||
miR-30-3p | 3183 | 3190 | 1A,m8 | hsa-miR-30a-3p | CUUUCAGUCGGAUGUUUGCAGC |
hsa-miR-30e-3p | cuuucagucggauguauacagc | ||||
miR-30-5p | 332 | 338 | 1A | HSA-MIR-30A-5P | UGUAAACAUCCUCGACUGGAAG |
hsa-miR-30cbrain | uguaaacauccuacucucucucucagc | ||||
hsa-miR-30dSZ | uguaaacauccccgacuggaag | ||||
hsa-miR-30bSZ | UGUAAACAUCCUACACUCAGCU | ||||
hsa-miR-30e-5p | UGUAAACAUCCUUGACUGGA | ||||
miR-320 | 2038 | 2045 | 1A,m8 | HSA-MIR-320 | AAAAGCUGGGUUGAGAGGGCGAA |
miR-324-3p | 351 | 357 | 1A | HSA-MIR-324-3P | ccacugccccaggugcugcugg |
mir-377 | 2520 | 2527 | 1A,m8 | hsa-miR-377 | aucacacaaaggaacuuuuugu |
mir-382 | 283 | 289 | m8 | hsa-miR-382brain | GAAGUUGUUCGUGGUGGAUUCG |
mir-493-5p | 2612 | 2618 | 1A | hsa-miR-493-5p | UUGUACAUGGUAGGCUUUCAUU |
mir-494 | 400 | 406 | 1A | hsa-miR-494brain | UGAAACAUACACGGGAAACCUCUU |
mir-496 | 3652 | 3658 | 1A | hsa-miR-496 | AUUACAUGGCCAAUCUC |