Gene Page:CYTH4

Summary?
GeneID 27128
Symbol CYTH4
Synonyms CYT4|DJ63G5.1|PSCD4
Description cytohesin 4
Reference MIM:606514|HGNC:HGNC:9505|Ensembl:ENSG00000100055|HPRD:07354|Vega:OTTHUMG00000150562
Gene type protein-coding
Map location 22q12.3-q13.1
Pascal p-value 0.816
Sherlock p-value 0.47
Fetal beta -1.12
eGene Myers' cis & trans

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:GWASdb Genome-wide Association Studies GWASdb records for schizophrenia
CV:PGCnp Genome-wide Association Study GWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP ID Chromosome Position eGene Gene Entrez ID pvalue qvalue TSS distance eQTL type
rs17483451 0 CYTH4 27128 0.16 trans
rs12564871 chr1 163771926 CYTH4 27128 0.07 trans
rs6430976 chr2 128822384 CYTH4 27128 1.835E-6 trans
rs11684252 chr2 128829365 CYTH4 27128 6.66E-4 trans
rs16850942 chr3 161898689 CYTH4 27128 0.15 trans
rs17000340 chr4 76135365 CYTH4 27128 0.03 trans
rs17036588 chr4 158561487 CYTH4 27128 6.551E-6 trans
rs7445750 chr5 104331223 CYTH4 27128 0.01 trans
rs544338 chr5 104625129 CYTH4 27128 0.03 trans
rs10080391 chr6 4912440 CYTH4 27128 0.06 trans
rs687029 chr7 42856861 CYTH4 27128 0.19 trans
rs16877878 chr8 31176024 CYTH4 27128 0.18 trans
rs17722245 chr9 1070774 CYTH4 27128 0.13 trans
rs17775722 chr9 26199256 CYTH4 27128 0.09 trans
rs17618655 chr9 73983104 CYTH4 27128 3.449E-5 trans
rs11255704 chr10 8501820 CYTH4 27128 0.04 trans
rs4934985 chr10 33905260 CYTH4 27128 0.08 trans
rs7119964 chr11 10425509 CYTH4 27128 0.01 trans
rs509027 chr11 109200795 CYTH4 27128 0.02 trans
rs10876176 chr12 51811831 CYTH4 27128 0.1 trans
rs1359205 chr13 43722847 CYTH4 27128 0.17 trans
rs17089379 chr13 64433308 CYTH4 27128 0.01 trans
rs17119861 chr14 48679838 CYTH4 27128 0.18 trans
rs8072151 chr17 50228268 CYTH4 27128 3.172E-7 trans
rs16963567 chr19 30455279 CYTH4 27128 0.01 trans
rs2179733 chr20 53876875 CYTH4 27128 0.09 trans
rs1344430 chr20 60099390 CYTH4 27128 1.555E-6 trans
rs6121675 chr20 60116713 CYTH4 27128 0.12 trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 - 26 postconception周),ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
BIOCARTA ARAP PATHWAY 18 13 All SZGR 2.0 genes in this pathway
PARENT MTOR SIGNALING UP 567 375 All SZGR 2.0 genes in this pathway
ZHOU INFLAMMATORY RESPONSE LIVE DN 384 220 All SZGR 2.0 genes in this pathway
HOEBEKE LYMPHOID STEM CELL UP 95 64 All SZGR 2.0 genes in this pathway
MULLIGHAN MLL SIGNATURE 1 UP 380 236 All SZGR 2.0 genes in this pathway
MULLIGHAN MLL SIGNATURE 2 UP 418 263 All SZGR 2.0 genes in this pathway
ZHOU INFLAMMATORY RESPONSE FIMA DN 284 156 All SZGR 2.0 genes in this pathway
LINDGREN BLADDER CANCER CLUSTER 2B 392 251 All SZGR 2.0 genes in this pathway
SHEN SMARCA2 TARGETS DN 357 212 All SZGR 2.0 genes in this pathway
WONG IFNA2 RESISTANCE DN 34 20 All SZGR 2.0 genes in this pathway
BOYLAN MULTIPLE MYELOMA D DN 78 34 All SZGR 2.0 genes in this pathway
CHEN METABOLIC SYNDROM NETWORK 1210 725 All SZGR 2.0 genes in this pathway
BOYLAN MULTIPLE MYELOMA PCA3 DN 69 38 All SZGR 2.0 genes in this pathway
MARTENS BOUND BY PML RARA FUSION 456 287 All SZGR 2.0 genes in this pathway
VERHAAK GLIOBLASTOMA MESENCHYMAL 216 130 All SZGR 2.0 genes in this pathway
CHYLA CBFA2T3 TARGETS UP 387 225 All SZGR 2.0 genes in this pathway