Summary
基因 27232
象征 gnmt
Synonyms HEL-S-182mP
Description 甘氨酸N-甲基转移酶
Reference MIM:606628|HGNC:HGNC:4415|ENSEMBL:ENSG00000124713|HPRD:05970|Vega:Otthumg0000000014712
基因类型 蛋白质编码
地图上的位置 6p12
Pascal P值 0.774
胎儿β -0.277
主持人 前扣带回皮层BA24
小脑半球
小脑
皮质
Frontal Cortex BA9
海马
Hypothalamus
伏隔核基底神经节
Putamen basal ganglia
Myers' cis & trans

Gene in Data Sources
基因集名称 基因的方法设置 Description 信息
PMID:cooccur High-throughput literature-search PubMed中的系统搜索与SCZ关键字共发生的基因。总共包括3027个基因。
GSMA_I Genome scan meta-analysis Psr: 0.033
gsma_iie Genome scan meta-analysis (European-ancestry samples) PSR:0.04433
Literature High-throughput literature-search Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias 点击显示详细信息

Section I. Genetics and epigenetics annotation

@EQTL注释

SNP ID 染色体 位置 主持人 Gene Entrez ID PVALUE QVALUE TSS距离 EQTL类型
RS6941212 CHR6 42915919 gnmt 27232 7.043e-5 顺式
rs2274517 CHR6 42932714 gnmt 27232 4.007E-8 顺式
RS6941212 CHR6 42915919 gnmt 27232 0.01 反式
rs2274517 CHR6 42932714 gnmt 27232 9.283E-6 反式
rs3763236 6 42902508 gnmt ENSG00000124713.5 1.806E-6 0 -25988 gtex_brain_ba24
rs9471972 6 42915021 gnmt ENSG00000124713.5 2.286E-7 0 -13475 gtex_brain_ba24
RS7770760 6 42915403 gnmt ENSG00000124713.5 9.4E-8 0 -13093 gtex_brain_ba24
RS6941212 6 42915920 gnmt ENSG00000124713.5 1.344E-6 0 -12576 gtex_brain_ba24
RS4714638 6 42917017 gnmt ENSG00000124713.5 1.233E-7 0 -11479 gtex_brain_ba24
rs9471974 6 42918984 gnmt ENSG00000124713.5 9.418e-7 0 -9512 gtex_brain_ba24
rs9471975 6 42919222 gnmt ENSG00000124713.5 1.248E-8 0 -9274 gtex_brain_ba24
rs2104616 6 42919969 gnmt ENSG00000124713.5 2.382E-8 0 -8527 gtex_brain_ba24
RS59824590 6 42920416 gnmt ENSG00000124713.5 1.107E-8 0 -8080年 gtex_brain_ba24
rs9471976 6 42920549 gnmt ENSG00000124713.5 3.098E-8 0 -7947 gtex_brain_ba24
RS4469287 6 42920844 gnmt ENSG00000124713.5 3.479E-8 0 -7652 gtex_brain_ba24
RS28868299 6 42921221 gnmt ENSG00000124713.5 1.997E-8 0 -7275 gtex_brain_ba24
RS145239038 6 42921474 gnmt ENSG00000124713.5 5.394e-8 0 -7022 gtex_brain_ba24
RS202000850 6 42921489 gnmt ENSG00000124713.5 1.154E-6 0 -7007 gtex_brain_ba24
RS58497441 6 42921561 gnmt ENSG00000124713.5 2.454e-8 0 -6935 gtex_brain_ba24
RS56108053 6 42921673 gnmt ENSG00000124713.5 6.531E-7 0 -6823 gtex_brain_ba24
RS6458313 6 42922018 gnmt ENSG00000124713.5 2.105E-8 0 -6478 gtex_brain_ba24
RS6458314 6 42922215 gnmt ENSG00000124713.5 7.346e-9 0 -6281 gtex_brain_ba24
RS6458315 6 42922547 gnmt ENSG00000124713.5 2.708E-8 0 -5949 gtex_brain_ba24
RS12524845 6 42923902 gnmt ENSG00000124713.5 2.477E-8 0 -4594 gtex_brain_ba24
RS112122607 6 42924041 gnmt ENSG00000124713.5 2.452E-8 0 -4455 gtex_brain_ba24
RS13215983 6 42924193 gnmt ENSG00000124713.5 2.425E-8 0 -4303 gtex_brain_ba24
RS13216214 6 42924247 gnmt ENSG00000124713.5 2.411E-8 0 -4249 gtex_brain_ba24
RS4714640 6 42924424 gnmt ENSG00000124713.5 2.366E-8 0 -4072 gtex_brain_ba24
RS70990160 6 42924488 gnmt ENSG00000124713.5 1.832E-8 0 -4008 gtex_brain_ba24
RS4714641 6 42924622 gnmt ENSG00000124713.5 2.175E-8 0 -3874 gtex_brain_ba24
RS56038104 6 42924894 gnmt ENSG00000124713.5 1.985E-6 0 -3602 gtex_brain_ba24
rs6940814 6 42924932 gnmt ENSG00000124713.5 8.725E-9 0 -3564 gtex_brain_ba24
RS6920547 6 42924955 gnmt ENSG00000124713.5 2.222e-8 0 -3541 gtex_brain_ba24
rs6940837 6 42924969 gnmt ENSG00000124713.5 2.217E-8 0 -3527 gtex_brain_ba24
RS9296403 6 42925683 gnmt ENSG00000124713.5 5.657E-7 0 -2813 gtex_brain_ba24
RS9296404 6 42925803 gnmt ENSG00000124713.5 2.048e-8 0 -2693 gtex_brain_ba24
RS9462855 6 42925936 gnmt ENSG00000124713.5 2.025e-8 0 -2560 gtex_brain_ba24
RS9462856 6 42926024 gnmt ENSG00000124713.5 1.5e-8 0 -2472 gtex_brain_ba24
rs370513007 6 42926477 gnmt ENSG00000124713.5 5.183E-7 0 -2019 gtex_brain_ba24
RS11752813 6 42928017 gnmt ENSG00000124713.5 4.623E-7 0 -479 gtex_brain_ba24
RS10948059 6 42928461 gnmt ENSG00000124713.5 5.509E-8 0 -35 gtex_brain_ba24
RS2296805 6 42928758 gnmt ENSG00000124713.5 5.799E-9 0 262 gtex_brain_ba24
rs9471978 6 42929533 gnmt ENSG00000124713.5 5.696E-8 0 1037 gtex_brain_ba24
RS7760250 6 42929839 gnmt ENSG00000124713.5 1.65e-8 0 1343 gtex_brain_ba24
RS4987173 6 42931224 gnmt ENSG00000124713.5 4.076E-7 0 2728 gtex_brain_ba24
RS2296804 6 42931261 gnmt ENSG00000124713.5 5.224e-9 0 2765 gtex_brain_ba24
RS5875822 6 42931627 gnmt ENSG00000124713.5 5.146E-9 0 3131 gtex_brain_ba24
RS1129187 6 42932200 gnmt ENSG00000124713.5 3.923E-7 0 3704 gtex_brain_ba24
RS1129186 6 42932202 gnmt ENSG00000124713.5 1.508E-8 0 3706 gtex_brain_ba24
rs2274517 6 42932715 gnmt ENSG00000124713.5 1.504E-8 0 4219 gtex_brain_ba24
rs2274514 6 42934500 gnmt ENSG00000124713.5 2.707E-8 0 6004 gtex_brain_ba24
RS3818554 6 42934620 gnmt ENSG00000124713.5 4.78E-8 0 6124 gtex_brain_ba24
RS4714644 6 42934818 gnmt ENSG00000124713.5 2.839E-8 0 6322 gtex_brain_ba24
rs9471982 6 42935998 gnmt ENSG00000124713.5 1.504E-8 0 7502 gtex_brain_ba24
rs3805953 6 42936900 gnmt ENSG00000124713.5 3.163E-8 0 8404 gtex_brain_ba24
RS3805952 6 42937126 gnmt ENSG00000124713.5 1.137E-6 0 8630 gtex_brain_ba24
RS3805951 6 42937176 gnmt ENSG00000124713.5 1.163E-6 0 8680 gtex_brain_ba24
rs3293 6 42938377 gnmt ENSG00000124713.5 4.78E-8 0 9881 gtex_brain_ba24
RS10948061 6 42940235 gnmt ENSG00000124713.5 1.161E-6 0 11739 gtex_brain_ba24
rs9471983 6 42940365 gnmt ENSG00000124713.5 1.161E-6 0 11869 gtex_brain_ba24
RS200189441 6 42940524 gnmt ENSG00000124713.5 9.519E-9 0 12028 gtex_brain_ba24
RS570622275 6 42940525 gnmt ENSG00000124713.5 4.781E-8 0 12029 gtex_brain_ba24
RS2395943 6 42940673 gnmt ENSG00000124713.5 1.831E-8 0 12177 gtex_brain_ba24
RS9296406 6 42940810 gnmt ENSG00000124713.5 3.665E-8 0 12314 gtex_brain_ba24
rs9471985 6 42941324 gnmt ENSG00000124713.5 4.753E-8 0 12828 gtex_brain_ba24
RS71855084 6 42942180 gnmt ENSG00000124713.5 1.953E-6 0 13684 gtex_brain_ba24
RS9296407 6 42942451 gnmt ENSG00000124713.5 4.713E-8 0 13955 gtex_brain_ba24
RS9462857 6 42943098 gnmt ENSG00000124713.5 1.142E-6 0 14602 gtex_brain_ba24
rs9471986 6 42944127 gnmt ENSG00000124713.5 5.345e-9 0 15631 gtex_brain_ba24
rs9471987 6 42944140 gnmt ENSG00000124713.5 6.708E-9 0 15644 gtex_brain_ba24
rs9471988 6 42944773 gnmt ENSG00000124713.5 3.464e-8 0 16277 gtex_brain_ba24
RS6907751 6 42944850 gnmt ENSG00000124713.5 1.53E-7 0 16354 gtex_brain_ba24
RS200735142 6 42944988 gnmt ENSG00000124713.5 2.987E-8 0 16492 gtex_brain_ba24
RS201802248 6 42945582 gnmt ENSG00000124713.5 3.973E-7 0 17086 gtex_brain_ba24
RS199921136 6 42945583 gnmt ENSG00000124713.5 1.846E-7 0 17087 gtex_brain_ba24
RS9462858 6 42946490 gnmt ENSG00000124713.5 1.092E-6 0 17994 gtex_brain_ba24
RS9462859 6 42946943 gnmt ENSG00000124713.5 1.068E-6 0 18447 gtex_brain_ba24
RS9462860 6 42947013 gnmt ENSG00000124713.5 2.109E-8 0 18517 gtex_brain_ba24
rs3805946 6 42955749 gnmt ENSG00000124713.5 5.619E-7 0 27253 gtex_brain_ba24
RS2007950 6 43049461 gnmt ENSG00000124713.5 8.385e-7 0 120965 gtex_brain_ba24
rs9471972 6 42915021 gnmt ENSG00000124713.5 2.253E-6 0 -13475 gtex_brain_putamen_basal
RS6941212 6 42915920 gnmt ENSG00000124713.5 1.348E-7 0 -12576 gtex_brain_putamen_basal
RS4714638 6 42917017 gnmt ENSG00000124713.5 3.254e-7 0 -11479 gtex_brain_putamen_basal
rs9471974 6 42918984 gnmt ENSG00000124713.5 6.881E-9 0 -9512 gtex_brain_putamen_basal
rs9471975 6 42919222 gnmt ENSG00000124713.5 8.664e-8 0 -9274 gtex_brain_putamen_basal
rs2104616 6 42919969 gnmt ENSG00000124713.5 3.627E-8 0 -8527 gtex_brain_putamen_basal
RS59824590 6 42920416 gnmt ENSG00000124713.5 8.037E-8 0 -8080年 gtex_brain_putamen_basal
rs9471976 6 42920549 gnmt ENSG00000124713.5 1.468E-7 0 -7947 gtex_brain_putamen_basal
RS4469287 6 42920844 gnmt ENSG00000124713.5 1.703E-7 0 -7652 gtex_brain_putamen_basal
RS28868299 6 42921221 gnmt ENSG00000124713.5 2.636E-7 0 -7275 gtex_brain_putamen_basal
RS145239038 6 42921474 gnmt ENSG00000124713.5 1.25E-7 0 -7022 gtex_brain_putamen_basal
RS58497441 6 42921561 gnmt ENSG00000124713.5 1.274E-7 0 -6935 gtex_brain_putamen_basal
RS56108053 6 42921673 gnmt ENSG00000124713.5 5.456e-9 0 -6823 gtex_brain_putamen_basal
RS6458313 6 42922018 gnmt ENSG00000124713.5 2.755E-7 0 -6478 gtex_brain_putamen_basal
RS6458314 6 42922215 gnmt ENSG00000124713.5 1.236E-7 0 -6281 gtex_brain_putamen_basal
RS6458315 6 42922547 gnmt ENSG00000124713.5 1.007E-6 0 -5949 gtex_brain_putamen_basal
RS12524845 6 42923902 gnmt ENSG00000124713.5 1.328E-7 0 -4594 gtex_brain_putamen_basal
RS112122607 6 42924041 gnmt ENSG00000124713.5 1.322E-7 0 -4455 gtex_brain_putamen_basal
RS13215983 6 42924193 gnmt ENSG00000124713.5 1.315E-7 0 -4303 gtex_brain_putamen_basal
RS13216214 6 42924247 gnmt ENSG00000124713.5 1.314E-7 0 -4249 gtex_brain_putamen_basal
RS4714640 6 42924424 gnmt ENSG00000124713.5 1.303E-7 0 -4072 gtex_brain_putamen_basal
RS70990160 6 42924488 gnmt ENSG00000124713.5 1.193E-7 0 -4008 gtex_brain_putamen_basal
RS4714641 6 42924622 gnmt ENSG00000124713.5 1.311E-7 0 -3874 gtex_brain_putamen_basal
RS56038104 6 42924894 gnmt ENSG00000124713.5 1.129E-7 0 -3602 gtex_brain_putamen_basal
RS6920547 6 42924955 gnmt ENSG00000124713.5 9.795E-7 0 -3541 gtex_brain_putamen_basal
rs6940837 6 42924969 gnmt ENSG00000124713.5 1.324E-7 0 -3527 gtex_brain_putamen_basal
RS9296403 6 42925683 gnmt ENSG00000124713.5 1.351E-8 0 -2813 gtex_brain_putamen_basal
RS9296404 6 42925803 gnmt ENSG00000124713.5 1.231E-7 0 -2693 gtex_brain_putamen_basal
RS9462855 6 42925936 gnmt ENSG00000124713.5 1.227E-7 0 -2560 gtex_brain_putamen_basal
RS9462856 6 42926024 gnmt ENSG00000124713.5 2.391E-7 0 -2472 gtex_brain_putamen_basal
rs370513007 6 42926477 gnmt ENSG00000124713.5 5.299E-9 0 -2019 gtex_brain_putamen_basal
RS11752813 6 42928017 gnmt ENSG00000124713.5 5.162E-9 0 -479 gtex_brain_putamen_basal
RS10948059 6 42928461 gnmt ENSG00000124713.5 4.617E-8 0 -35 gtex_brain_putamen_basal
RS2296805 6 42928758 gnmt ENSG00000124713.5 7.276E-8 0 262 gtex_brain_putamen_basal
RS7760250 6 42929839 gnmt ENSG00000124713.5 1.151E-7 0 1343 gtex_brain_putamen_basal
RS4987173 6 42931224 gnmt ENSG00000124713.5 5.179E-9 0 2728 gtex_brain_putamen_basal
RS2296804 6 42931261 gnmt ENSG00000124713.5 7.353E-8 0 2765 gtex_brain_putamen_basal
RS5875822 6 42931627 gnmt ENSG00000124713.5 7.315E-8 0 3131 gtex_brain_putamen_basal
RS1129187 6 42932200 gnmt ENSG00000124713.5 5.198E-9 0 3704 gtex_brain_putamen_basal
RS1129186 6 42932202 gnmt ENSG00000124713.5 1.14e-7 0 3706 gtex_brain_putamen_basal
rs2274517 6 42932715 gnmt ENSG00000124713.5 8.746E-7 0 4219 gtex_brain_putamen_basal
rs2274514 6 42934500 gnmt ENSG00000124713.5 1.356E-7 0 6004 gtex_brain_putamen_basal
RS3818554 6 42934620 gnmt ENSG00000124713.5 1.788E-7 0 6124 gtex_brain_putamen_basal
RS4714644 6 42934818 gnmt ENSG00000124713.5 1.026E-6 0 6322 gtex_brain_putamen_basal
rs9471982 6 42935998 gnmt ENSG00000124713.5 8.746E-7 0 7502 gtex_brain_putamen_basal
rs3805953 6 42936900 gnmt ENSG00000124713.5 3.294E-7 0 8404 gtex_brain_putamen_basal
RS3805952 6 42937126 gnmt ENSG00000124713.5 7.736e-9 0 8630 gtex_brain_putamen_basal
RS3805951 6 42937176 gnmt ENSG00000124713.5 7.855E-9 0 8680 gtex_brain_putamen_basal
rs3293 6 42938377 gnmt ENSG00000124713.5 1.239E-6 0 9881 gtex_brain_putamen_basal
RS10948061 6 42940235 gnmt ENSG00000124713.5 7.855E-9 0 11739 gtex_brain_putamen_basal
rs9471983 6 42940365 gnmt ENSG00000124713.5 7.855E-9 0 11869 gtex_brain_putamen_basal
RS200189441 6 42940524 gnmt ENSG00000124713.5 1.784E-7 0 12028 gtex_brain_putamen_basal
RS570622275 6 42940525 gnmt ENSG00000124713.5 1.148E-6 0 12029 gtex_brain_putamen_basal
RS2395943 6 42940673 gnmt ENSG00000124713.5 9.649e-8 0 12177 gtex_brain_putamen_basal
RS9296406 6 42940810 gnmt ENSG00000124713.5 3.695E-7 0 12314 gtex_brain_putamen_basal
rs9471985 6 42941324 gnmt ENSG00000124713.5 1.235E-6 0 12828 gtex_brain_putamen_basal
RS9296407 6 42942451 gnmt ENSG00000124713.5 1.227E-6 0 13955 gtex_brain_putamen_basal
RS9986447 6 42942779 gnmt ENSG00000124713.5 3.494e-8 0 14283 gtex_brain_putamen_basal
RS9462857 6 42943098 gnmt ENSG00000124713.5 7.723e-9 0 14602 gtex_brain_putamen_basal
rs9471987 6 42944140 gnmt ENSG00000124713.5 2.567E-6 0 15644 gtex_brain_putamen_basal
rs9471988 6 42944773 gnmt ENSG00000124713.5 8.598E-7 0 16277 gtex_brain_putamen_basal
RS6907751 6 42944850 gnmt ENSG00000124713.5 2.017E-8 0 16354 gtex_brain_putamen_basal
RS200735142 6 42944988 gnmt ENSG00000124713.5 2.583E-7 0 16492 gtex_brain_putamen_basal
RS201802248 6 42945582 gnmt ENSG00000124713.5 6.849E-7 0 17086 gtex_brain_putamen_basal
RS199921136 6 42945583 gnmt ENSG00000124713.5 6.722E-7 0 17087 gtex_brain_putamen_basal
RS9462858 6 42946490 gnmt ENSG00000124713.5 1.03E-7 0 17994 gtex_brain_putamen_basal
RS9462859 6 42946943 gnmt ENSG00000124713.5 9.915e-8 0 18447 gtex_brain_putamen_basal
RS13199873 6 43040368 gnmt ENSG00000124713.5 1.048E-6 0 111872 gtex_brain_putamen_basal
RS2007950 6 43049461 gnmt ENSG00000124713.5 4.189E-7 0 120965 gtex_brain_putamen_basal

第二节。转录组注释

一般基因表达(GTEX)

无法使用

Devlopment期间的基因表达(BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

时间变化的基因表达(brainspan)

Footnote:
SC:亚皮质区域;SM:感觉运动区域;FC:额叶皮层;和TP:颞顶皮层
ST1:胎儿(13-26个概念后周),ST2:婴儿早期至童年(4个月至11年)和ST3:青春期至成年期(13-23年)
所示的栏表示表达分布的较低25%和上层25%。

No co-expressed genes in brain regions


第三节。基因本体论注释

分子功能 去学期 证据 神经关键字 PubMed ID
去:0005542 叶酸结合 IEA -
GO:0016740 转移酶活性 IEA -
GO:0017174 甘氨酸N-甲基转移酶活性 IEA -
生物过程 去学期 证据 神经关键字 PubMed ID
去:0006464 蛋白质修饰过程 nas 10843803
Cellular component 去学期 证据 神经关键字 PubMed ID
去:0005737 cytoplasm IEA -

Section V. Pathway annotation

路径名 路径大小 # SZGR 2.0 genes in pathway 信息
Kegg甘氨酸丝氨酸和苏氨酸代谢 31 26 All SZGR 2.0 genes in this pathway
DODD NASOPHARYNGEAL CARCINOMA UP 1821年 933 All SZGR 2.0 genes in this pathway
chebotaev gr目标 77 62 All SZGR 2.0 genes in this pathway
Perez TP53目标 1174 695 All SZGR 2.0 genes in this pathway
农民乳腺癌根源与腔内 326 213 All SZGR 2.0 genes in this pathway
农民乳腺癌根源与基础 330 217 All SZGR 2.0 genes in this pathway
Sheth肝癌与TXNIP损失PAM4 261 153 All SZGR 2.0 genes in this pathway
iglesias e2f目标dn 16 11 All SZGR 2.0 genes in this pathway
Martinez RB1靶向DN 543 317 All SZGR 2.0 genes in this pathway
MARTINEZ TP53 TARGETS DN 593 372 All SZGR 2.0 genes in this pathway
Martinez RB1和TP53靶向DN 591 366 All SZGR 2.0 genes in this pathway
ACEVEDO NORMAL TISSUE ADJACENT TO LIVER TUMOR DN 354 216 All SZGR 2.0 genes in this pathway
阿塞维多肝肿瘤与正常的相邻组织向上 863 514 All SZGR 2.0 genes in this pathway
Smid乳腺癌基础DN 701 446 All SZGR 2.0 genes in this pathway
ERBB2 CDC25A的射线肿瘤发生 104 57 All SZGR 2.0 genes in this pathway
YOSHIMURA MAPK8 TARGETS UP 1305 895 All SZGR 2.0 genes in this pathway
CHEN METABOLIC SYNDROM NETWORK 1210 725 All SZGR 2.0 genes in this pathway
MEISSNER NPC HCP WITH H3 UNMETHYLATED 536 296 All SZGR 2.0 genes in this pathway
Meissner Brain HCP带有H3K27Me3 269 159 All SZGR 2.0 genes in this pathway
CAIRO HEPATOBLASTOMA DN 267 160 All SZGR 2.0 genes in this pathway
开罗肝脏发展DN 222 141 All SZGR 2.0 genes in this pathway
Mikkelsen MEF HCP与H3未甲基化 228 119 All SZGR 2.0 genes in this pathway
Bakker FOXO3靶向DN 187 109 All SZGR 2.0 genes in this pathway
FEVR CTNNB1靶向 682 433 All SZGR 2.0 genes in this pathway
前列腺癌模型DN中的Acevedo FGFR1靶标 308 187 All SZGR 2.0 genes in this pathway