Gene Page:GSN
Summary?
基因 | 2934 |
象征 | GSN |
Synonyms | ADF | Agel |
Description | 凝胶林 |
Reference | MIM: 137350|HGNC:HGNC:4620|ENSEMBL:ENSG00000148180|HPRD:00674|Vega:Otthumg00000020584 |
基因类型 | 蛋白质编码 |
Map location | 9q33 |
Pascal p-value | 0.064 |
Sherlock p-value | 0.187 |
胎儿β | -2.469 |
DMG | 1(# studies) |
主持人 | Myers' cis & trans |
Support | G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS G2CDB.HUMAN_BAYES-COLLINS-HUMAN-PSD-FULL G2CDB.HUMANNRC CompositeSet 潜在的突触基因 |
Gene in Data Sources
基因集名称 | Method of gene set | Description | 信息 |
---|---|---|---|
简历:Gwascat | Genome-wide Association Studies | 该数据集包括与精神分裂症相关的560个SNP。总共将486个基因映射到50kb内的这些SNP。 | |
CV:GWASdb | Genome-wide Association Studies | 精神分裂症的GWASDB记录 | |
CV:PGCnp | Genome-wide Association Study | GWAS | |
DMG:Wockner_2014 | 全基因组DNA甲基化分析 | 该数据集包括4641个差异甲基化探针,对应于精神分裂症患者(n = 24)和对照组(n = 24)之间的2929个独特基因。 | 1 |
PMID:cooccur | High-throughput literature-search | PubMed中的系统搜索与SCZ关键字共发生的基因。总共包括3027个基因。 | |
Literature | High-throughput literature-search | 与精神分裂症关键词共同存在:精神分裂症,精神分裂症,精神分裂症 | 点击显示详细信息 |
Section I. Genetics and epigenetics annotation
Differentially methylated gene
Probe | 染色体 | 位置 | Nearest gene | p(dis) | Beta (dis) | fdr(dis) | 学习 |
---|---|---|---|---|---|---|---|
cg13584244 | 9 | 124030048 | GSN | 7.65E-5 | -0.578 | 0.025 | DMG:Wockner_2014 |
eQTL annotation
SNP ID | 染色体 | 位置 | 主持人 | Gene Entrez ID | pvalue | QVALUE | TSS距离 | EQTL类型 |
---|---|---|---|---|---|---|---|---|
RS798365 | CHR2 | 16896755 | GSN | 2934 | 0.15 | 反式 | ||
RS317971 | CHR5 | 66688724 | GSN | 2934 | 0.18 | 反式 | ||
RS6934246 | CHR6 | 35154494 | GSN | 2934 | 0.19 | 反式 | ||
rs17792062 | CHR8 | 129163736 | GSN | 2934 | 0.09 | 反式 | ||
rs6482363 | chr10 | 24368607 | GSN | 2934 | 0.07 | 反式 | ||
RS11049036 | chr12 | 27650292 | GSN | 2934 | 0.1 | 反式 | ||
RS10879027 | chr12 | 70237156 | GSN | 2934 | 0.12 | 反式 |
第二节。转录组注释
一般基因表达(GTEX)
![Not available](http://www.tjghsg.com/bioinfo/SZGR/GeneImg/GSN_DE_GTEx.png)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
时间变化的基因表达(brainspan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 - 26 postconception一周s), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
所示的栏表示表达分布的较低25%和上层25%。
No co-expressed genes in brain regions
Section IV. Protein-protein interaction annotation
互动者 | 别名b | 官方全名b | 实验 | Source | PubMed ID |
---|---|---|---|---|---|
ACTA1 | Acta |Asma |CFTD |CFTD1 |CFTDM |mpfd |Nem1 |Nem2 |NEM3 | actin, alpha 1, skeletal muscle | - | HPRD,BioGRID | 10583954 |
ACTB | PS1TP5BP1 | Actin,Beta | - | HPRD | 10945978 |
ACTN4 | ACTININ-4 | DKFZp686K23158 | FSGS | FSGS1 | 肌动蛋白,α4 | - | HPRD,BioGRID | 11733011 |
应用程序 | AAA |Abeta |abpp |AD1 |appi |ctfgamma |CVAP |PN2 | 淀粉样β(A4)前体蛋白 | - | HPRD,BioGRID | 10329371 |
ar | AIS | DHTR | HUMARA | KD | NR3C4 | SBMA | SMAX1 | TFM | 雄激素受体 | - | HPRD,BioGRID | 12941811 |
BCAR1 | cas |cas1 |Cass1 |crkas |P130CAS | breast cancer anti-estrogen resistance 1 | - | HPRD | 11577104 |
CASP4 | ICE(rel)II | ICEREL-II | ICH-2 | Mih1/TX | TX | caspase 4,与凋亡相关的半胱氨酸肽酶 | Affinity Capture-MS | Biogrid | 17353931 |
CLIC5 | clic5b |FLJ90663 |MST130 |MSTP130 |DJ447E21.4 | chloride intracellular channel 5 | - | HPRD | 10793131 |
FN1 | CIG | DKFZp686F10164 | DKFZp686H0342 | DKFZp686I1370 | DKFZp686O13149 | ED-B | FINC | FN | FNZ | GFND | GFND2 | LETS | MSF | 纤连蛋白1 | - | HPRD,BioGRID | 6092370 |
LIMK2 | - | LIM域激酶2 | - | HPRD | 11171090 |
PIK3CA | MGC142161 | MGC142163 | PI3K | p110-alpha | 磷酸肌醇3-激酶,催化,α多肽 | 亲和力捕获 - 韦斯特恩 | Biogrid | 11577104 |
PLCG1 | PLC-II | PLC1 | PLC148 | PLCgamma1 | 磷脂酶C,伽马1 | 重构的复合物 | Biogrid | 9164868 |
ppm1b | MGC21657 |pp2c-beta-x |pp2cb |pp2cbeta |ppc2betax | 蛋白质磷酸酶1B(以前为2C),镁依赖性β同工型 | Affinity Capture-MS | Biogrid | 17353931 |
PTK2 | FADK | FAK | FAK1 | pp125FAK | PTK2 protein tyrosine kinase 2 | 亲和力捕获 - 韦斯特恩 | Biogrid | 11577104 |
PTK2B | Cadtk |cakb |fadk2 |fak2 |frnk |PKB |PTK |pyk2 |筏 | PTK2B protein tyrosine kinase 2 beta | - | HPRD,BioGRID | 12578912 |
PTPN12 | ptp-pest |PTPG1 | protein tyrosine phosphatase, non-receptor type 12 | 亲和力捕获 - 韦斯特恩 | Biogrid | 11577104 |
PXN | FLJ16691 | paxillin | - | HPRD,BioGRID | 11577104 |
src | ASV | SRC1 | c-SRC | p60-Src | V-SRC肉瘤(Schmidt-Ruppin A-2)病毒癌基因同源物(Avian) | 亲和力捕获 - 韦斯特恩 | Biogrid | 11577104 |
STK39 | DCHT |DKFZP686K05124 |pask |SPAK | 丝氨酸苏氨酸激酶39(Ste20/sps1同源物,酵母) | Two-hybrid | Biogrid | 14563843 |
tnik | - | TRAF2和NCK相互作用激酶 | - | HPRD | 10521462 |
tom1l1 | OK/KNS-CL.3 | SRCASM | target of myb1 (chicken)-like 1 | Two-hybrid | Biogrid | 16169070 |
VASP | - | 血管扩张剂刺激的磷蛋白 | - | HPRD | 11093254 |
VCL | CMD1W |MVCL | Vinculin | - | HPRD,BioGRID | 11577104 |
VDAC1 | MGC111064 |波林|Porin-31-HL | 电压依赖性阴离子通道1 | - | HPRD,BioGRID | 11039896 |