Summary
基因 3667
Symbol IRS1
Synonyms HIRS-1
Description insulin receptor substrate 1
参考erence MIM:147545|HGNC:HGNC:6125|Ensembl:ENSG00000169047|HPRD:00943|Vega:OTTHUMG00000133179
Gene type 蛋白质编码
Map location 2Q36
Pascal p-value 0.008
胎儿β 1.215
DMG 3 (# studies)
主持人 Myers' cis & trans
Support G2CDB.HUMANNRC
G2CDB.HUMANPSP
CompositeSet
Ascano FMRP targets

Gene in Data Sources
Gene set name Method of gene set Description 信息
CV:PGCnp Genome-wide Association Study GWAS
DMG:Jaffe_2016 全基因组DNA甲基化分析 this dataset includes 2,104 probes/CpGs associated with SZ patients (n=108) compared to 136 controls at Bonferroni-adjusted P < 0.05. 4
DMG:Montano_2016 全基因组DNA甲基化分析 this dataset includes 172 replicated associations between CpGs with schizophrenia. 4
DMG:Wockner_2014 全基因组DNA甲基化分析 该数据集包括4641个差异甲基化探针,对应于精神分裂症患者(n = 24)和对照组(n = 24)之间的2929个独特基因。 4
DNM:Xu_2012 Whole Exome Sequencing analysis De novo mutations of 4 genes were identified by exome sequencing of 795 samples in this study
PMID:cooccur High-throughput literature-search Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included.
GSMA_IIA Genome scan meta-analysis (All samples) PSR:0.00916
GSMA_IIE Genome scan meta-analysis (European-ancestry samples) Psr: 0.01016
Literature High-throughput literature-search Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias 点击显示详细信息
Network Shortest path distance of core genes in the Human protein-protein interaction network Contribution to shortest path in PPI network: 0.0631

Section I. Genetics and epigenetics annotation

@DNMtable

Gene Chromosome Position 参考 alt transcript AA change Mutation type CG46 trait 学习
IRS1 chr2 227661300 C t NM_005544 p.719e> k missense Schizophrenia DNM:Xu_2012

@Differentially methylated gene

Probe Chromosome Position 最近的基因 p(dis) Beta (dis) fdr(dis) 学习
cg14078053 2 227661656 IRS1 2.15e-4 0.006 0.16 DMG:Montano_2016
cg04751089 2 227659636 IRS1 1.095E-4 0.469 0.028 DMG:Wockner_2014
cg05263838 2 227659406 IRS1 1.541E-4 0.778 0.032 DMG:Wockner_2014
cg03298167 2 227663911 IRS1 5.11E-8 -0.027 1.35 e-5 DMG:Jaffe_2016

@eQTL annotation

SNP ID Chromosome Position 主持人 Gene Entrez ID pvalue QVALUE TSS距离 EQTL类型
RS17088272 CHR18 71410110 IRS1 3667 0.19 trans
RS17088278 CHR18 71412692 IRS1 3667 0.13 trans

第二节。转录组注释

一般基因表达(GTEX)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC:亚皮质区域;SM:感觉运动区域;FC:额叶皮层;和TP:颞顶皮层
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
the bar shown representes the lower 25% and upper 25% of the expression distribution.

top co-expressed genes in brain regions

前10个积极共表达的基因
Gene Pearson's Correlation Spearman's Correlation
ruvbl2 0.94 0.95
C17orf49 0.93 0.94
PSMB7 0.93 0.94
PRMT1 0.93 0.95
PSMA7 0.93 0.94
trim39 0.93 0.92
CLPP 0.93 0.92
ERGIC3 0.93 0.95
RRP9 0.93 0.93
DDX49 0.93 0.93
top 10 negatively co-expressed genes
Gene Pearson's Correlation Spearman's Correlation
AF347015.27 -0.72 -0.82
AF347015.33 -0.72 -0.82
AF347015.8 -0.71 -0.81
MT-CO2 -0.70 -0.78
mt-cyb -0.70 -0.81
AF347015.15 -0.70 -0.82
AF347015.26 -0.69 -0.84
AF347015.31 -0.69 -0.77
AF347015.2 -0.69 -0.81
AF347015.9 -0.65 -0.78

第三节。基因本体论注释

分子功能 去学期 证据 神经关键字 PubMed ID
GO:0004871 signal transducer activity tAS 1311924|8513971
去:0005159 胰岛素样生长因子受体结合 IPI 7541045
去:0005158 insulin receptor binding IPI 7537849|7559478
去:0005069 transmembrane receptor protein tyrosine kinase docking protein activity tAS 1648180
去:0005515 蛋白质结合 IPI 8388384|9295312|11018022
GO:0042169 SH2域结合 ISS -
GO:0019901 protein kinase binding IEA -
GO:0043548 磷酸肌醇3-激酶结合 IPI 16043515
GO:0043548 磷酸肌醇3-激酶结合 ISS -
生物过程 去学期 证据 神经关键字 PubMed ID
GO:0007165 信号转导 tAS 1311924
GO:0008286 胰岛素受体信号通路 IPI 7537849|7559478
GO:0048009 胰岛素样生长因子受体信号通路 IPI 7541045
GO:0043491 protein kinase B signaling cascade IEA -
Cellular component 去学期 证据 神经关键字 PubMed ID
去:0005792 microsome ISS -
GO:0005634 nucleus ISS -
去:0005737 cytoplasm ISS -
GO:0005901 小屋 IDA 15182363
GO:0005886 plasma membrane EXP 12167717

Section IV. Protein-protein interaction annotation

Interactors Aliases B Official full name B 实验 Source PubMed ID
AKT1 AKT | MGC99656 | PKB | PKB-ALPHA | PRKBA | RAC | RAC-ALPHA V-Akt鼠胸腺瘤病毒癌基因同源1 - HPRD,BioGRID 10497255
ALK CD246 | Ki-1 | TFG/ALK anaplastic lymphoma receptor tyrosine kinase - HPRD 9174053
AP3S1 CLAPS3 | Sigma3A adaptor-related protein complex 3, sigma 1 subunit - HPRD,BioGRID 9792713
ATP2A1 ATP2A | SERCA1 ATPase,CA ++运输,心肌,快速抽搐1 - HPRD 9295312
BCL2 Bcl-2 B-cell CLL/lymphoma 2 亲和力捕获 - 韦斯特恩 Biogrid 10679027
BCL2L1 BCL-XL/S | BCL2L | BCLX | Bcl-X | DKFZp781P2092 | bcl-xL | bcl-xS BCL2-like 1 - HPRD,BioGRID 10679027
CDH1 Arc-1 | CD324 | CDHE | ECAD | LCAM | UVO cadherin 1, type 1, E-cadherin (epithelial) - HPRD 11035789
CHUK IKBKA | IKK-alpha | IKK1 | IKKA | NFKBIKA | TCF16 保守的螺旋环螺旋无处不在激酶 - HPRD,BioGRID 12351658
FRAP1 FLJ44809 |frap |frap2 |mtor |RAFT1 |Rapt1 FK506 binding protein 12-rapamycin associated protein 1 亲和力捕获 - 韦斯特恩 Biogrid 11287630
GRB10 GRB-IR | Grb-10 | IRBP | KIAA0207 | MEG1 | RSS growth factor receptor-bound protein 10 重构的复合物 Biogrid 8621530
GRB2 灰烬|EGFRBP-GRB2 |Grb3-3 |MST084 |MSTP084 growth factor receptor-bound protein 2 - HPRD 7488107
GRB2 灰烬|EGFRBP-GRB2 |Grb3-3 |MST084 |MSTP084 growth factor receptor-bound protein 2 亲和力捕获 - 韦斯特恩
重构的复合物
Biogrid 8491186|8536716
|12173038
IGF1R CD221 | IGFIR | JTK13 | MGC142170 | MGC142172 | MGC18216 insulin-like growth factor 1 receptor IGFIR interacts with IRS-1. BIND 7541045
IGF1R CD221 | IGFIR | JTK13 | MGC142170 | MGC142172 | MGC18216 insulin-like growth factor 1 receptor IRS-1与IGF-IR相互作用。这种相互作用是根据大鼠IRS-1和人IGF-IR之间的相互作用建模的。 BIND 10026153
IGF1R CD221 | IGFIR | JTK13 | MGC142170 | MGC142172 | MGC18216 insulin-like growth factor 1 receptor - HPRD,BioGRID 7559507
ikbkb FLJ40509 | IKK-beta | IKK2 | IKKB | MGC131801 | NFKBIKB inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta 亲和力捕获 - 韦斯特恩 Biogrid 12351658
ikbkg AMCBX1 |FIP-3 |fip3 |fip3p |ikk-gamma |IP |IP1 |IP2 |IPD2 |Nemo B细胞,激酶γ中Kappa光多肽基因增强子的抑制剂 - HPRD 12351658
IL4R CD124 | IL4RA interleukin 4 receptor - HPRD,BioGRID 8599766
INSR CD220 |HHF5 insulin receptor IRS-1 interacts with IR. This interaction was modeled on a demonstrated interaction between rat IRS-1 and human IR. BIND 10026153
INSR CD220 |HHF5 insulin receptor Insulin Receptor Substrate-1 Binds to the Insulin Receptor. This interaction is modeled on demonstrated interaction between human IR and rat IRS-1 BIND 8626379
INSR CD220 |HHF5 insulin receptor - HPRD,BioGRID 11606564
JAK1 jak1a |jak1b |JTK3 Janus激酶1(蛋白酪氨酸激酶) 亲和力捕获 - 韦斯特恩
生化活动
Biogrid 7499365|9492017
JAK2 JTK10 Janus激酶2(蛋白酪氨酸激酶) 亲和力捕获 - 韦斯特恩
生化活动
Biogrid 9492017|11208867
JAK3 JAK-3 | JAK3_HUMAN | JAKL | L-JAK | LJAK Janus kinase 3 (a protein tyrosine kinase, leukocyte) - HPRD,BioGRID 7499365
KHDRBS1 FLJ34027 |SAM68 |p62 KH domain containing, RNA binding, signal transduction associated 1 亲和力捕获 - 韦斯特恩 Biogrid 11604231
MAPK8 jnk |JNK1 |JNK1A2 |JNK21B1/2 |prkm8 |SAPK1 有丝分裂原激活的蛋白激酶8 - HPRD,BioGRID 10722755|11606564
|12417588
MAPK9 JNK-55 |jnk2 |jnk2a |jnk2alpha |JNK2B |jnk2beta |prkm9 |SAPK |p54a |P54ASAPK 有丝分裂原激活的蛋白激酶9 - HPRD 12417588
NISCH FLJ14425 |FLJ40413 |FLJ90519 |I-1 |iras |KIAA0975 Nischarin 亲和力捕获 - 韦斯特恩 Biogrid 11912194
PHIP FLJ20705 |FLJ45918 |MGC90216 |WDR11 |NDRP pleckstrin同源域相互作用蛋白 - HPRD 11018022
PIK3CA MGC142161 | MGC142163 | PI3K | p110-alpha phosphoinositide-3-kinase、催化αpolypeptide 亲和力捕获 - 韦斯特恩 Biogrid 16354680
PIK3R1 GRB1 | p85 | p85-ALPHA 磷酸肌醇3-激酶,调节亚基1(alpha) 亲和力捕获 - 韦斯特恩
Far Western
Biogrid 1381348|12107746
|12173038|12730242
PIK3R1 GRB1 | p85 | p85-ALPHA 磷酸肌醇3-激酶,调节亚基1(alpha) - HPRD 1381348|12173038
PIK3R1 GRB1 | p85 | p85-ALPHA 磷酸肌醇3-激酶,调节亚基1(alpha) - HPRD 12220227
PIK3R2 P85B |P85 |p85-beta 磷酸肌醇3-激酶,调节亚基2(beta) IRS-1与p85-beta相互作用。这种相互作用是基于未知物种的未指定物种和p85-beta的IRS-1之间的相互作用进行建模的。 BIND 11172806
PIK3R2 P85B |P85 |p85-beta 磷酸肌醇3-激酶,调节亚基2(beta) - HPRD 11120660
PIK3R3 DKFZp686P05226 | FLJ41892 | p55 | p55-GAMMA phosphoinositide-3-kinase, regulatory subunit 3 (gamma) - HPRD,BioGRID 7542745|9415396
|10417350
PRKCD May1 |MGC49908 |PKCD |npkc-delta 蛋白激酶C,三角洲 - HPRD,BioGRID 12031982
PTK2 FADK | FAK | FAK1 | pp125FAK PTK2protein tyrosine kinase 2 - HPRD,BioGRID 9822703
PTPN1 PTP1B protein tyrosine phosphatase, non-receptor type 1 - HPRD,BioGRID 10660596
PTPN11 BPTP3 | CFC | MGC14433 | NS1 | PTP-1D | PTP2C | SH-PTP2 | SH-PTP3 | SHP2 protein tyrosine phosphatase, non-receptor type 11 - HPRD,BioGRID 8505282|9756938
ptprc B220 |CD45 |CD45R |GP180 |LCA |ly5 |T200 蛋白酪氨酸磷酸酶,受体类型,C - HPRD,BioGRID 8557683
PTPRF FLJ43335 | FLJ45062 | FLJ45567 | LAR 蛋白酪氨酸磷酸酶,受体类型,F - HPRD 10660596
SFN YWHAS Stratifin Affinity Capture-MS Biogrid 15778465
SHC1 FLJ26504 | SHC | SHCA SHC(SRC同源性2结构域)转化蛋白1 Direct interaction between IRS-1 and SHC. This interaction was modeled on a demonstrated interaction between rat IRS-1 and human SHC BIND 9202037
SHC1 FLJ26504 | SHC | SHCA SHC(SRC同源性2结构域)转化蛋白1 - HPRD,BioGRID 7499194
SOCS1 CIS1 | CISH1 | JAB | SOCS-1 | SSI-1 | SSI1 | TIP3 suppressor of cytokine signaling 1 - HPRD,BioGRID 11208867|12228220
SOCS3 ATOD4 | CIS3 | Cish3 | MGC71791 | SOCS-3 | SSI-3 | SSI3 suppressor of cytokine signaling 3 - HPRD 12228220
tUB RD5 tubby homolog (mouse) - HPRD 10455176
tYK2 JTK1 酪氨酸激酶2 - HPRD,BioGRID 8550573
UBTF NOR-90 | UBF 上游绑定记录ion factor, RNA polymerase I - HPRD,BioGRID 12554758
YWHAB GW128 |HS1 |KCIP-1 酪氨酸3-单加氧酶/色氨酸5-单加氧酶激活蛋白,β多肽 - HPRD,BioGRID 9422753
YWHAE 14-3-3E | FLJ45465 | KCIP-1 | MDCR | MDS tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide IRS-1与14-3-3- epsilon同工型相互作用。这种相互作用是在人IRS-1和小鼠14-3-3- epsilon同工型之间的相互作用上建模的。 BIND 9111084
YWHAE 14-3-3E | FLJ45465 | KCIP-1 | MDCR | MDS tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide - HPRD,BioGRID 9111084|9312143
YWHAH YWHA1 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide 亲和力捕获 - 韦斯特恩 Biogrid 11969417
YWHAZ KCIP-1|MGC111427 | MGC126532 | MGC138156 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide - HPRD,BioGRID 9312143


Section V. Pathway annotation

Pathway name 路径大小 # SZGR 2.0 genes in pathway 信息
KEGG NEUROTROPHIN SIGNALING PATHWAY 126 103 All SZGR 2.0 genes in this pathway
KEGG INSULIN SIGNALING PATHWAY 137 103 All SZGR 2.0 genes in this pathway
KEGG ADIPOCYTOKINE SIGNALING PATHWAY 67 57 All SZGR 2.0 genes in this pathway
KEGG TYPE II DIABETES MELLITUS 47 41 All SZGR 2.0 genes in this pathway
KEGG ALDOSTERONE REGULATED SODIUM REABSORPTION 42 29 All SZGR 2.0 genes in this pathway
Biocarta GH途径 28 22 All SZGR 2.0 genes in this pathway
BIOCARTA IGF1 PATHWAY 21 16 All SZGR 2.0 genes in this pathway
BIOCARTA IL4 PATHWAY 11 8 All SZGR 2.0 genes in this pathway
BIOCARTA IL2RB PATHWAY 38 26 All SZGR 2.0 genes in this pathway
BIOCARTA INSULIN PATHWAY 22 16 All SZGR 2.0 genes in this pathway
BIOCARTA IGF1R PATHWAY 23 20 All SZGR 2.0 genes in this pathway
BIOCARTA EIF4 PATHWAY 24 19 All SZGR 2.0 genes in this pathway
SIG PIP3 SIGNALING IN CARDIAC MYOCTES 67 54 All SZGR 2.0 genes in this pathway
SIG IL4RECEPTOR IN B LYPHOCYTES 27 23 All SZGR 2.0 genes in this pathway
心肌细胞中的SIG胰岛素受体途径 51 41 All SZGR 2.0 genes in this pathway
PID INSULIN PATHWAY 45 32 All SZGR 2.0 genes in this pathway
PID IL4 2PATHWAY 65 43 All SZGR 2.0 genes in this pathway
PID PTP1B PATHWAY 52 40 All SZGR 2.0 genes in this pathway
PID RET路径 39 29 All SZGR 2.0 genes in this pathway
PID SHP2 PATHWAY 58 46 All SZGR 2.0 genes in this pathway
PID MTOR 4PATHWAY 69 55 All SZGR 2.0 genes in this pathway
PID IL2 1PATHWAY 55 43 All SZGR 2.0 genes in this pathway
PID IGF1 PATHWAY 30 23 All SZGR 2.0 genes in this pathway
PID AVB3 INTEGRIN PATHWAY 75 53 All SZGR 2.0 genes in this pathway
PID S1P S1P2 PATHWAY 24 19 All SZGR 2.0 genes in this pathway
REACTOME SIGNALLING BY NGF 217 167 All SZGR 2.0 genes in this pathway
REACTOME GROWTH HORMONE RECEPTOR SIGNALING 24 19 All SZGR 2.0 genes in this pathway
REACTOME INSULIN RECEPTOR SIGNALLING CASCADE 87 64 All SZGR 2.0 genes in this pathway
Reactome NGF信号通过TRKA从质膜发出 137 105 All SZGR 2.0 genes in this pathway
REACTOME PI3K AKT ACTIVATION 38 29 All SZGR 2.0 genes in this pathway
REACTOME SIGNALING BY INSULIN RECEPTOR 108 72 All SZGR 2.0 genes in this pathway
REACTOME SIGNAL ATTENUATION 14 8 All SZGR 2.0 genes in this pathway
REACTOME SOS MEDIATED SIGNALLING 14 13 All SZGR 2.0 genes in this pathway
REACTOME IMMUNE SYSTEM 933 616 All SZGR 2.0 genes in this pathway
REACTOME CYTOKINE SIGNALING IN IMMUNE SYSTEM 270 204 All SZGR 2.0 genes in this pathway
Reactome PI3K级联 71 51 All SZGR 2.0 genes in this pathway
SAMOLS TARGETS OF KHSV MIRNAS DN 62 35 All SZGR 2.0 genes in this pathway
DEURIG T CELL PROLYMPHOCYTIC LEUKEMIA UP 368 234 All SZGR 2.0 genes in this pathway
DOANE RESPONSE TO ANDROGEN DN 241 146 All SZGR 2.0 genes in this pathway
Senese HDAC1靶向DN 260 143 All SZGR 2.0 genes in this pathway
Kim WT1靶向DN 459 276 All SZGR 2.0 genes in this pathway
甲状腺癌的Rodrigues分化不佳的DN 805 505 All SZGR 2.0 genes in this pathway
GOZGIT ESR1 TARGETS DN 781 465 All SZGR 2.0 genes in this pathway
ENK UV响应角质形成细胞DN 485 334 All SZGR 2.0 genes in this pathway
DELYS THYROID CANCER DN 232 154 All SZGR 2.0 genes in this pathway
GRAESSMANN APOPTOSIS BY SERUM DEPRIVATION UP 552 347 All SZGR 2.0 genes in this pathway
GRAESSMANN RESPONSE TO MC AND SERUM DEPRIVATION UP 211 136 All SZGR 2.0 genes in this pathway
BREUHAHN GROWTH FACTOR SIGNALING IN LIVER CANCER 22 19 All SZGR 2.0 genes in this pathway
SCHEIDEREIT IKK TARGETS 18 15 All SZGR 2.0 genes in this pathway
农民乳腺癌基础与仙女 330 215 All SZGR 2.0 genes in this pathway
SCHEIDEREIT IKK INTERACTING PROTEINS 58 45 All SZGR 2.0 genes in this pathway
PATIL LIVER CANCER 747 453 All SZGR 2.0 genes in this pathway
DACOSTA UV RESPONSE VIA ERCC3 DN 855 609 All SZGR 2.0 genes in this pathway
DACOSTA UV RESPONSE VIA ERCC3 COMMON DN 483 336 All SZGR 2.0 genes in this pathway
Gruetzmann胰腺癌 358 245 All SZGR 2.0 genes in this pathway
BUYTAERT PHOTODYNAMIC THERAPY STRESS DN 637 377 All SZGR 2.0 genes in this pathway
LEE TARGETS OF PTCH1 AND SUFU UP 53 37 All SZGR 2.0 genes in this pathway
BASSO CD40 SIGNALING DN 68 44 All SZGR 2.0 genes in this pathway
MARTINEZ RESPONSE TO TRABECTEDIN 50 32 All SZGR 2.0 genes in this pathway
Browne HCMV感染10小时DN 56 37 All SZGR 2.0 genes in this pathway
CUI TCF21 TARGETS 2 DN 830 547 All SZGR 2.0 genes in this pathway
BROWNE HCMV INFECTION 14HR DN 298 200 All SZGR 2.0 genes in this pathway
DASU IL6 SIGNALING SCAR UP 30 21 All SZGR 2.0 genes in this pathway
Browne HCMV感染18小时DN 178 121 All SZGR 2.0 genes in this pathway
DAZARD RESPONSE TO UV NHEK DN 318 220 All SZGR 2.0 genes in this pathway
Bandres对Carmustin没有MGMT 48小时DN的响应 32 25 All SZGR 2.0 genes in this pathway
BAELDE DIABETIC NEPHROPATHY DN 434 302 All SZGR 2.0 genes in this pathway
DAZARD UV RESPONSE CLUSTER G6 153 112 All SZGR 2.0 genes in this pathway
BANDRES RESPONSE TO CARMUSTIN MGMT 48HR DN 161 105 All SZGR 2.0 genes in this pathway
GENTILE UV RESPONSE CLUSTER D8 40 29 All SZGR 2.0 genes in this pathway
WANG SMARCE1 TARGETS UP 280 183 All SZGR 2.0 genes in this pathway
CREIGHTON ENDOCRINE THERAPY RESISTANCE 1 528 324 All SZGR 2.0 genes in this pathway
CREIGHTON ENDOCRINE THERAPY RESISTANCE 4 307 185 All SZGR 2.0 genes in this pathway
HILLION HMGA1 TARGETS 90 71 All SZGR 2.0 genes in this pathway
MASSARWEH TAMOXIFEN RESISTANCE DN 258 160 All SZGR 2.0 genes in this pathway
Massarweh对雌二醇的反应 61 47 All SZGR 2.0 genes in this pathway
肝癌DN中的阿塞维多甲基化 940 425 All SZGR 2.0 genes in this pathway
SMID BREAST CANCER BASAL DN 701 446 All SZGR 2.0 genes in this pathway
Bonome卵巢癌的生存次优秀 510 309 All SZGR 2.0 genes in this pathway
BOQUEST STEM CELL UP 260 174 All SZGR 2.0 genes in this pathway
对Salirasib dn的Blum响应 342 220 All SZGR 2.0 genes in this pathway
JIANG TIP30 TARGETS UP 46 28 All SZGR 2.0 genes in this pathway
VANTVEER BREAST CANCER ESR1 UP 167 99 All SZGR 2.0 genes in this pathway
DING LUNG CANCER BY MUTATION RATE 20 18 All SZGR 2.0 genes in this pathway
清肝癌子类CTNNB1 UP 176 110 All SZGR 2.0 genes in this pathway
YAGI AML WITH INV 16 TRANSLOCATION 422 277 All SZGR 2.0 genes in this pathway
Johnstone Parvb目标2 DN 336 211 All SZGR 2.0 genes in this pathway
MIYAGAWA TARGETS OF EWSR1 ETS FUSIONS DN 229 135 All SZGR 2.0 genes in this pathway
PASINI SUZ12 TARGETS DN 315 215 All SZGR 2.0 genes in this pathway
LEE BMP2 TARGETS UP 745 475 All SZGR 2.0 genes in this pathway
Winzen通过KHSRP退化 100 70 All SZGR 2.0 genes in this pathway
GOBERT OLIGODENDROCYTE DIFFERENTIATION DN 1080 713 All SZGR 2.0 genes in this pathway
ikeda mir30目标 116 87 All SZGR 2.0 genes in this pathway
PLASARI TGFB1 TARGETS 10HR DN 244 157 All SZGR 2.0 genes in this pathway
通过p38部分的phong TNF响应 160 106 All SZGR 2.0 genes in this pathway
BMP7的Zhang脂肪形成 14 12 All SZGR 2.0 genes in this pathway
前列腺癌模型DN中的Acevedo FGFR1靶标 308 187 All SZGR 2.0 genes in this pathway

Section VI. microRNA annotation

miRNA family target position miRNA ID mirna seq
UTR开始 UTR结束 匹配方法
mir-126/126-3p 131 137 1A HSA-MIR-126brain UCGUACCGUGAGUAAUAAUGC
miR-128 232 239 1A,m8 hsa-miR-128a UCACAGUGAACCGGUCUCUUUU
hsa-miR-128b UCACAGUGAACCGGUCUCUUUC
miR-145 4 10 m8 HSA-MIR-145 GUCCAGUUUUCCCAGGAAUCCCUU
miR-183 671 678 1A,m8 HSA-MIR-183 UAUGGCACUGGUAGAAUUCACUG
miR-200bc/429 449 455 1A hsa-miR-200b UAAUACUGCCUGGUAAUGAUGAC
hsa-miR-200c UAAUACUGCCGGGUAAUGAUGG
hsa-miR-429 UAAUACUGUCUGGUAAAACCGU
miR-27 233 239 m8 hsa-miR-27abrain uucacaguggcuaaguuccgc
hsa-miR-27bbrain UUCACAGUGGCUAAGUUCUGC
miR-30-5p 154 160 m8 HSA-MIR-30A-5P UGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrain UGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZ uguaaacauccccgacuggaag
hsa-miR-30bSZ uguaaacauccuaccucucagcu
hsa-miR-30e-5p UGUAAACAUCCUUGACUGGA
mir-487b 132 138 m8 HSA-MIR-487B aaucguacagggucauccacuu
mir-96 209 215 m8 HSA-MIR-96brain UUUGGCACUAGCACAUUUUUGC