Gene Page:IRS1
Summary?
基因 | 3667 |
Symbol | IRS1 |
Synonyms | HIRS-1 |
Description | insulin receptor substrate 1 |
参考erence | MIM:147545|HGNC:HGNC:6125|Ensembl:ENSG00000169047|HPRD:00943|Vega:OTTHUMG00000133179 |
Gene type | 蛋白质编码 |
Map location | 2Q36 |
Pascal p-value | 0.008 |
胎儿β | 1.215 |
DMG | 3 (# studies) |
主持人 | Myers' cis & trans |
Support | G2CDB.HUMANNRC G2CDB.HUMANPSP CompositeSet Ascano FMRP targets |
Gene in Data Sources
Gene set name | Method of gene set | Description | 信息 |
---|---|---|---|
CV:PGCnp | Genome-wide Association Study | GWAS | |
DMG:Jaffe_2016 | 全基因组DNA甲基化分析 | this dataset includes 2,104 probes/CpGs associated with SZ patients (n=108) compared to 136 controls at Bonferroni-adjusted P < 0.05. | 4 |
DMG:Montano_2016 | 全基因组DNA甲基化分析 | this dataset includes 172 replicated associations between CpGs with schizophrenia. | 4 |
DMG:Wockner_2014 | 全基因组DNA甲基化分析 | 该数据集包括4641个差异甲基化探针,对应于精神分裂症患者(n = 24)和对照组(n = 24)之间的2929个独特基因。 | 4 |
DNM:Xu_2012 | Whole Exome Sequencing analysis | De novo mutations of 4 genes were identified by exome sequencing of 795 samples in this study | |
PMID:cooccur | High-throughput literature-search | Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included. | |
GSMA_IIA | Genome scan meta-analysis (All samples) | PSR:0.00916 | |
GSMA_IIE | Genome scan meta-analysis (European-ancestry samples) | Psr: 0.01016 | |
Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias | 点击显示详细信息 |
Network | Shortest path distance of core genes in the Human protein-protein interaction network | Contribution to shortest path in PPI network: 0.0631 |
Section I. Genetics and epigenetics annotation
DNMtable
Gene | Chromosome | Position | 参考 | alt | transcript | AA change | Mutation type | 筛 | CG46 | trait | 学习 |
---|---|---|---|---|---|---|---|---|---|---|---|
IRS1 | chr2 | 227661300 | C | t | NM_005544 | p.719e> k | missense | Schizophrenia | DNM:Xu_2012 |
Differentially methylated gene
Probe | Chromosome | Position | 最近的基因 | p(dis) | Beta (dis) | fdr(dis) | 学习 |
---|---|---|---|---|---|---|---|
cg14078053 | 2 | 227661656 | IRS1 | 2.15e-4 | 0.006 | 0.16 | DMG:Montano_2016 |
cg04751089 | 2 | 227659636 | IRS1 | 1.095E-4 | 0.469 | 0.028 | DMG:Wockner_2014 |
cg05263838 | 2 | 227659406 | IRS1 | 1.541E-4 | 0.778 | 0.032 | DMG:Wockner_2014 |
cg03298167 | 2 | 227663911 | IRS1 | 5.11E-8 | -0.027 | 1.35 e-5 | DMG:Jaffe_2016 |
eQTL annotation
SNP ID | Chromosome | Position | 主持人 | Gene Entrez ID | pvalue | QVALUE | TSS距离 | EQTL类型 |
---|---|---|---|---|---|---|---|---|
RS17088272 | CHR18 | 71410110 | IRS1 | 3667 | 0.19 | trans | ||
RS17088278 | CHR18 | 71412692 | IRS1 | 3667 | 0.13 | trans |
第二节。转录组注释
一般基因表达(GTEX)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC:亚皮质区域;SM:感觉运动区域;FC:额叶皮层;和TP:颞顶皮层
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
the bar shown representes the lower 25% and upper 25% of the expression distribution.
top co-expressed genes in brain regions
前10个积极共表达的基因 | ||
Gene | Pearson's Correlation | Spearman's Correlation |
ruvbl2 | 0.94 | 0.95 |
C17orf49 | 0.93 | 0.94 |
PSMB7 | 0.93 | 0.94 |
PRMT1 | 0.93 | 0.95 |
PSMA7 | 0.93 | 0.94 |
trim39 | 0.93 | 0.92 |
CLPP | 0.93 | 0.92 |
ERGIC3 | 0.93 | 0.95 |
RRP9 | 0.93 | 0.93 |
DDX49 | 0.93 | 0.93 |
top 10 negatively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
AF347015.27 | -0.72 | -0.82 |
AF347015.33 | -0.72 | -0.82 |
AF347015.8 | -0.71 | -0.81 |
MT-CO2 | -0.70 | -0.78 |
mt-cyb | -0.70 | -0.81 |
AF347015.15 | -0.70 | -0.82 |
AF347015.26 | -0.69 | -0.84 |
AF347015.31 | -0.69 | -0.77 |
AF347015.2 | -0.69 | -0.81 |
AF347015.9 | -0.65 | -0.78 |
第三节。基因本体论注释
分子功能 | 去学期 | 证据 | 神经关键字 | PubMed ID |
---|---|---|---|---|
GO:0004871 | signal transducer activity | tAS | 1311924|8513971 | |
去:0005159 | 胰岛素样生长因子受体结合 | IPI | 7541045 | |
去:0005158 | insulin receptor binding | IPI | 7537849|7559478 | |
去:0005069 | transmembrane receptor protein tyrosine kinase docking protein activity | tAS | 1648180 | |
去:0005515 | 蛋白质结合 | IPI | 8388384|9295312|11018022 |
|
GO:0042169 | SH2域结合 | ISS | - | |
GO:0019901 | protein kinase binding | IEA | - | |
GO:0043548 | 磷酸肌醇3-激酶结合 | IPI | 16043515 | |
GO:0043548 | 磷酸肌醇3-激酶结合 | ISS | - | |
生物过程 | 去学期 | 证据 | 神经关键字 | PubMed ID |
GO:0007165 | 信号转导 | tAS | 1311924 | |
GO:0008286 | 胰岛素受体信号通路 | IPI | 7537849|7559478 | |
GO:0048009 | 胰岛素样生长因子受体信号通路 | IPI | 7541045 | |
GO:0043491 | protein kinase B signaling cascade | IEA | - | |
Cellular component | 去学期 | 证据 | 神经关键字 | PubMed ID |
去:0005792 | microsome | ISS | - | |
GO:0005634 | nucleus | ISS | - | |
去:0005737 | cytoplasm | ISS | - | |
GO:0005901 | 小屋 | IDA | 15182363 | |
GO:0005886 | plasma membrane | EXP | 12167717 |
Section IV. Protein-protein interaction annotation
Interactors | Aliases B | Official full name B | 实验 | Source | PubMed ID |
---|---|---|---|---|---|
AKT1 | AKT | MGC99656 | PKB | PKB-ALPHA | PRKBA | RAC | RAC-ALPHA | V-Akt鼠胸腺瘤病毒癌基因同源1 | - | HPRD,BioGRID | 10497255 |
ALK | CD246 | Ki-1 | TFG/ALK | anaplastic lymphoma receptor tyrosine kinase | - | HPRD | 9174053 |
AP3S1 | CLAPS3 | Sigma3A | adaptor-related protein complex 3, sigma 1 subunit | - | HPRD,BioGRID | 9792713 |
ATP2A1 | ATP2A | SERCA1 | ATPase,CA ++运输,心肌,快速抽搐1 | - | HPRD | 9295312 |
BCL2 | Bcl-2 | B-cell CLL/lymphoma 2 | 亲和力捕获 - 韦斯特恩 | Biogrid | 10679027 |
BCL2L1 | BCL-XL/S | BCL2L | BCLX | Bcl-X | DKFZp781P2092 | bcl-xL | bcl-xS | BCL2-like 1 | - | HPRD,BioGRID | 10679027 |
CDH1 | Arc-1 | CD324 | CDHE | ECAD | LCAM | UVO | cadherin 1, type 1, E-cadherin (epithelial) | - | HPRD | 11035789 |
CHUK | IKBKA | IKK-alpha | IKK1 | IKKA | NFKBIKA | TCF16 | 保守的螺旋环螺旋无处不在激酶 | - | HPRD,BioGRID | 12351658 |
FRAP1 | FLJ44809 |frap |frap2 |mtor |RAFT1 |Rapt1 | FK506 binding protein 12-rapamycin associated protein 1 | 亲和力捕获 - 韦斯特恩 | Biogrid | 11287630 |
GRB10 | GRB-IR | Grb-10 | IRBP | KIAA0207 | MEG1 | RSS | growth factor receptor-bound protein 10 | 重构的复合物 | Biogrid | 8621530 |
GRB2 | 灰烬|EGFRBP-GRB2 |Grb3-3 |MST084 |MSTP084 | growth factor receptor-bound protein 2 | - | HPRD | 7488107 |
GRB2 | 灰烬|EGFRBP-GRB2 |Grb3-3 |MST084 |MSTP084 | growth factor receptor-bound protein 2 | 亲和力捕获 - 韦斯特恩 重构的复合物 |
Biogrid | 8491186|8536716 |12173038 |
IGF1R | CD221 | IGFIR | JTK13 | MGC142170 | MGC142172 | MGC18216 | insulin-like growth factor 1 receptor | IGFIR interacts with IRS-1. | BIND | 7541045 |
IGF1R | CD221 | IGFIR | JTK13 | MGC142170 | MGC142172 | MGC18216 | insulin-like growth factor 1 receptor | IRS-1与IGF-IR相互作用。这种相互作用是根据大鼠IRS-1和人IGF-IR之间的相互作用建模的。 | BIND | 10026153 |
IGF1R | CD221 | IGFIR | JTK13 | MGC142170 | MGC142172 | MGC18216 | insulin-like growth factor 1 receptor | - | HPRD,BioGRID | 7559507 |
ikbkb | FLJ40509 | IKK-beta | IKK2 | IKKB | MGC131801 | NFKBIKB | inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta | 亲和力捕获 - 韦斯特恩 | Biogrid | 12351658 |
ikbkg | AMCBX1 |FIP-3 |fip3 |fip3p |ikk-gamma |IP |IP1 |IP2 |IPD2 |Nemo | B细胞,激酶γ中Kappa光多肽基因增强子的抑制剂 | - | HPRD | 12351658 |
IL4R | CD124 | IL4RA | interleukin 4 receptor | - | HPRD,BioGRID | 8599766 |
INSR | CD220 |HHF5 | insulin receptor | IRS-1 interacts with IR. This interaction was modeled on a demonstrated interaction between rat IRS-1 and human IR. | BIND | 10026153 |
INSR | CD220 |HHF5 | insulin receptor | Insulin Receptor Substrate-1 Binds to the Insulin Receptor. This interaction is modeled on demonstrated interaction between human IR and rat IRS-1 | BIND | 8626379 |
INSR | CD220 |HHF5 | insulin receptor | - | HPRD,BioGRID | 11606564 |
JAK1 | jak1a |jak1b |JTK3 | Janus激酶1(蛋白酪氨酸激酶) | 亲和力捕获 - 韦斯特恩 生化活动 |
Biogrid | 7499365|9492017 |
JAK2 | JTK10 | Janus激酶2(蛋白酪氨酸激酶) | 亲和力捕获 - 韦斯特恩 生化活动 |
Biogrid | 9492017|11208867 |
JAK3 | JAK-3 | JAK3_HUMAN | JAKL | L-JAK | LJAK | Janus kinase 3 (a protein tyrosine kinase, leukocyte) | - | HPRD,BioGRID | 7499365 |
KHDRBS1 | FLJ34027 |SAM68 |p62 | KH domain containing, RNA binding, signal transduction associated 1 | 亲和力捕获 - 韦斯特恩 | Biogrid | 11604231 |
MAPK8 | jnk |JNK1 |JNK1A2 |JNK21B1/2 |prkm8 |SAPK1 | 有丝分裂原激活的蛋白激酶8 | - | HPRD,BioGRID | 10722755|11606564 |12417588 |
MAPK9 | JNK-55 |jnk2 |jnk2a |jnk2alpha |JNK2B |jnk2beta |prkm9 |SAPK |p54a |P54ASAPK | 有丝分裂原激活的蛋白激酶9 | - | HPRD | 12417588 |
NISCH | FLJ14425 |FLJ40413 |FLJ90519 |I-1 |iras |KIAA0975 | Nischarin | 亲和力捕获 - 韦斯特恩 | Biogrid | 11912194 |
PHIP | FLJ20705 |FLJ45918 |MGC90216 |WDR11 |NDRP | pleckstrin同源域相互作用蛋白 | - | HPRD | 11018022 |
PIK3CA | MGC142161 | MGC142163 | PI3K | p110-alpha | phosphoinositide-3-kinase、催化αpolypeptide | 亲和力捕获 - 韦斯特恩 | Biogrid | 16354680 |
PIK3R1 | GRB1 | p85 | p85-ALPHA | 磷酸肌醇3-激酶,调节亚基1(alpha) | 亲和力捕获 - 韦斯特恩 Far Western |
Biogrid | 1381348|12107746 |12173038|12730242 |
PIK3R1 | GRB1 | p85 | p85-ALPHA | 磷酸肌醇3-激酶,调节亚基1(alpha) | - | HPRD | 1381348|12173038 |
PIK3R1 | GRB1 | p85 | p85-ALPHA | 磷酸肌醇3-激酶,调节亚基1(alpha) | - | HPRD | 12220227 |
PIK3R2 | P85B |P85 |p85-beta | 磷酸肌醇3-激酶,调节亚基2(beta) | IRS-1与p85-beta相互作用。这种相互作用是基于未知物种的未指定物种和p85-beta的IRS-1之间的相互作用进行建模的。 | BIND | 11172806 |
PIK3R2 | P85B |P85 |p85-beta | 磷酸肌醇3-激酶,调节亚基2(beta) | - | HPRD | 11120660 |
PIK3R3 | DKFZp686P05226 | FLJ41892 | p55 | p55-GAMMA | phosphoinositide-3-kinase, regulatory subunit 3 (gamma) | - | HPRD,BioGRID | 7542745|9415396 |10417350 |
PRKCD | May1 |MGC49908 |PKCD |npkc-delta | 蛋白激酶C,三角洲 | - | HPRD,BioGRID | 12031982 |
PTK2 | FADK | FAK | FAK1 | pp125FAK | PTK2protein tyrosine kinase 2 | - | HPRD,BioGRID | 9822703 |
PTPN1 | PTP1B | protein tyrosine phosphatase, non-receptor type 1 | - | HPRD,BioGRID | 10660596 |
PTPN11 | BPTP3 | CFC | MGC14433 | NS1 | PTP-1D | PTP2C | SH-PTP2 | SH-PTP3 | SHP2 | protein tyrosine phosphatase, non-receptor type 11 | - | HPRD,BioGRID | 8505282|9756938 |
ptprc | B220 |CD45 |CD45R |GP180 |LCA |ly5 |T200 | 蛋白酪氨酸磷酸酶,受体类型,C | - | HPRD,BioGRID | 8557683 |
PTPRF | FLJ43335 | FLJ45062 | FLJ45567 | LAR | 蛋白酪氨酸磷酸酶,受体类型,F | - | HPRD | 10660596 |
SFN | YWHAS | Stratifin | Affinity Capture-MS | Biogrid | 15778465 |
SHC1 | FLJ26504 | SHC | SHCA | SHC(SRC同源性2结构域)转化蛋白1 | Direct interaction between IRS-1 and SHC. This interaction was modeled on a demonstrated interaction between rat IRS-1 and human SHC | BIND | 9202037 |
SHC1 | FLJ26504 | SHC | SHCA | SHC(SRC同源性2结构域)转化蛋白1 | - | HPRD,BioGRID | 7499194 |
SOCS1 | CIS1 | CISH1 | JAB | SOCS-1 | SSI-1 | SSI1 | TIP3 | suppressor of cytokine signaling 1 | - | HPRD,BioGRID | 11208867|12228220 |
SOCS3 | ATOD4 | CIS3 | Cish3 | MGC71791 | SOCS-3 | SSI-3 | SSI3 | suppressor of cytokine signaling 3 | - | HPRD | 12228220 |
tUB | RD5 | tubby homolog (mouse) | - | HPRD | 10455176 |
tYK2 | JTK1 | 酪氨酸激酶2 | - | HPRD,BioGRID | 8550573 |
UBTF | NOR-90 | UBF | 上游绑定记录ion factor, RNA polymerase I | - | HPRD,BioGRID | 12554758 |
YWHAB | GW128 |HS1 |KCIP-1 | 酪氨酸3-单加氧酶/色氨酸5-单加氧酶激活蛋白,β多肽 | - | HPRD,BioGRID | 9422753 |
YWHAE | 14-3-3E | FLJ45465 | KCIP-1 | MDCR | MDS | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide | IRS-1与14-3-3- epsilon同工型相互作用。这种相互作用是在人IRS-1和小鼠14-3-3- epsilon同工型之间的相互作用上建模的。 | BIND | 9111084 |
YWHAE | 14-3-3E | FLJ45465 | KCIP-1 | MDCR | MDS | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide | - | HPRD,BioGRID | 9111084|9312143 |
YWHAH | YWHA1 | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide | 亲和力捕获 - 韦斯特恩 | Biogrid | 11969417 |
YWHAZ | KCIP-1|MGC111427 | MGC126532 | MGC138156 | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide | - | HPRD,BioGRID | 9312143 |
Section V. Pathway annotation
Pathway name | 路径大小 | # SZGR 2.0 genes in pathway | 信息 |
---|---|---|---|
KEGG NEUROTROPHIN SIGNALING PATHWAY | 126 | 103 | All SZGR 2.0 genes in this pathway |
KEGG INSULIN SIGNALING PATHWAY | 137 | 103 | All SZGR 2.0 genes in this pathway |
KEGG ADIPOCYTOKINE SIGNALING PATHWAY | 67 | 57 | All SZGR 2.0 genes in this pathway |
KEGG TYPE II DIABETES MELLITUS | 47 | 41 | All SZGR 2.0 genes in this pathway |
KEGG ALDOSTERONE REGULATED SODIUM REABSORPTION | 42 | 29 | All SZGR 2.0 genes in this pathway |
Biocarta GH途径 | 28 | 22 | All SZGR 2.0 genes in this pathway |
BIOCARTA IGF1 PATHWAY | 21 | 16 | All SZGR 2.0 genes in this pathway |
BIOCARTA IL4 PATHWAY | 11 | 8 | All SZGR 2.0 genes in this pathway |
BIOCARTA IL2RB PATHWAY | 38 | 26 | All SZGR 2.0 genes in this pathway |
BIOCARTA INSULIN PATHWAY | 22 | 16 | All SZGR 2.0 genes in this pathway |
BIOCARTA IGF1R PATHWAY | 23 | 20 | All SZGR 2.0 genes in this pathway |
BIOCARTA EIF4 PATHWAY | 24 | 19 | All SZGR 2.0 genes in this pathway |
SIG PIP3 SIGNALING IN CARDIAC MYOCTES | 67 | 54 | All SZGR 2.0 genes in this pathway |
SIG IL4RECEPTOR IN B LYPHOCYTES | 27 | 23 | All SZGR 2.0 genes in this pathway |
心肌细胞中的SIG胰岛素受体途径 | 51 | 41 | All SZGR 2.0 genes in this pathway |
PID INSULIN PATHWAY | 45 | 32 | All SZGR 2.0 genes in this pathway |
PID IL4 2PATHWAY | 65 | 43 | All SZGR 2.0 genes in this pathway |
PID PTP1B PATHWAY | 52 | 40 | All SZGR 2.0 genes in this pathway |
PID RET路径 | 39 | 29 | All SZGR 2.0 genes in this pathway |
PID SHP2 PATHWAY | 58 | 46 | All SZGR 2.0 genes in this pathway |
PID MTOR 4PATHWAY | 69 | 55 | All SZGR 2.0 genes in this pathway |
PID IL2 1PATHWAY | 55 | 43 | All SZGR 2.0 genes in this pathway |
PID IGF1 PATHWAY | 30 | 23 | All SZGR 2.0 genes in this pathway |
PID AVB3 INTEGRIN PATHWAY | 75 | 53 | All SZGR 2.0 genes in this pathway |
PID S1P S1P2 PATHWAY | 24 | 19 | All SZGR 2.0 genes in this pathway |
REACTOME SIGNALLING BY NGF | 217 | 167 | All SZGR 2.0 genes in this pathway |
REACTOME GROWTH HORMONE RECEPTOR SIGNALING | 24 | 19 | All SZGR 2.0 genes in this pathway |
REACTOME INSULIN RECEPTOR SIGNALLING CASCADE | 87 | 64 | All SZGR 2.0 genes in this pathway |
Reactome NGF信号通过TRKA从质膜发出 | 137 | 105 | All SZGR 2.0 genes in this pathway |
REACTOME PI3K AKT ACTIVATION | 38 | 29 | All SZGR 2.0 genes in this pathway |
REACTOME SIGNALING BY INSULIN RECEPTOR | 108 | 72 | All SZGR 2.0 genes in this pathway |
REACTOME SIGNAL ATTENUATION | 14 | 8 | All SZGR 2.0 genes in this pathway |
REACTOME SOS MEDIATED SIGNALLING | 14 | 13 | All SZGR 2.0 genes in this pathway |
REACTOME IMMUNE SYSTEM | 933 | 616 | All SZGR 2.0 genes in this pathway |
REACTOME CYTOKINE SIGNALING IN IMMUNE SYSTEM | 270 | 204 | All SZGR 2.0 genes in this pathway |
Reactome PI3K级联 | 71 | 51 | All SZGR 2.0 genes in this pathway |
SAMOLS TARGETS OF KHSV MIRNAS DN | 62 | 35 | All SZGR 2.0 genes in this pathway |
DEURIG T CELL PROLYMPHOCYTIC LEUKEMIA UP | 368 | 234 | All SZGR 2.0 genes in this pathway |
DOANE RESPONSE TO ANDROGEN DN | 241 | 146 | All SZGR 2.0 genes in this pathway |
Senese HDAC1靶向DN | 260 | 143 | All SZGR 2.0 genes in this pathway |
Kim WT1靶向DN | 459 | 276 | All SZGR 2.0 genes in this pathway |
甲状腺癌的Rodrigues分化不佳的DN | 805 | 505 | All SZGR 2.0 genes in this pathway |
GOZGIT ESR1 TARGETS DN | 781 | 465 | All SZGR 2.0 genes in this pathway |
ENK UV响应角质形成细胞DN | 485 | 334 | All SZGR 2.0 genes in this pathway |
DELYS THYROID CANCER DN | 232 | 154 | All SZGR 2.0 genes in this pathway |
GRAESSMANN APOPTOSIS BY SERUM DEPRIVATION UP | 552 | 347 | All SZGR 2.0 genes in this pathway |
GRAESSMANN RESPONSE TO MC AND SERUM DEPRIVATION UP | 211 | 136 | All SZGR 2.0 genes in this pathway |
BREUHAHN GROWTH FACTOR SIGNALING IN LIVER CANCER | 22 | 19 | All SZGR 2.0 genes in this pathway |
SCHEIDEREIT IKK TARGETS | 18 | 15 | All SZGR 2.0 genes in this pathway |
农民乳腺癌基础与仙女 | 330 | 215 | All SZGR 2.0 genes in this pathway |
SCHEIDEREIT IKK INTERACTING PROTEINS | 58 | 45 | All SZGR 2.0 genes in this pathway |
PATIL LIVER CANCER | 747 | 453 | All SZGR 2.0 genes in this pathway |
DACOSTA UV RESPONSE VIA ERCC3 DN | 855 | 609 | All SZGR 2.0 genes in this pathway |
DACOSTA UV RESPONSE VIA ERCC3 COMMON DN | 483 | 336 | All SZGR 2.0 genes in this pathway |
Gruetzmann胰腺癌 | 358 | 245 | All SZGR 2.0 genes in this pathway |
BUYTAERT PHOTODYNAMIC THERAPY STRESS DN | 637 | 377 | All SZGR 2.0 genes in this pathway |
LEE TARGETS OF PTCH1 AND SUFU UP | 53 | 37 | All SZGR 2.0 genes in this pathway |
BASSO CD40 SIGNALING DN | 68 | 44 | All SZGR 2.0 genes in this pathway |
MARTINEZ RESPONSE TO TRABECTEDIN | 50 | 32 | All SZGR 2.0 genes in this pathway |
Browne HCMV感染10小时DN | 56 | 37 | All SZGR 2.0 genes in this pathway |
CUI TCF21 TARGETS 2 DN | 830 | 547 | All SZGR 2.0 genes in this pathway |
BROWNE HCMV INFECTION 14HR DN | 298 | 200 | All SZGR 2.0 genes in this pathway |
DASU IL6 SIGNALING SCAR UP | 30 | 21 | All SZGR 2.0 genes in this pathway |
Browne HCMV感染18小时DN | 178 | 121 | All SZGR 2.0 genes in this pathway |
DAZARD RESPONSE TO UV NHEK DN | 318 | 220 | All SZGR 2.0 genes in this pathway |
Bandres对Carmustin没有MGMT 48小时DN的响应 | 32 | 25 | All SZGR 2.0 genes in this pathway |
BAELDE DIABETIC NEPHROPATHY DN | 434 | 302 | All SZGR 2.0 genes in this pathway |
DAZARD UV RESPONSE CLUSTER G6 | 153 | 112 | All SZGR 2.0 genes in this pathway |
BANDRES RESPONSE TO CARMUSTIN MGMT 48HR DN | 161 | 105 | All SZGR 2.0 genes in this pathway |
GENTILE UV RESPONSE CLUSTER D8 | 40 | 29 | All SZGR 2.0 genes in this pathway |
WANG SMARCE1 TARGETS UP | 280 | 183 | All SZGR 2.0 genes in this pathway |
CREIGHTON ENDOCRINE THERAPY RESISTANCE 1 | 528 | 324 | All SZGR 2.0 genes in this pathway |
CREIGHTON ENDOCRINE THERAPY RESISTANCE 4 | 307 | 185 | All SZGR 2.0 genes in this pathway |
HILLION HMGA1 TARGETS | 90 | 71 | All SZGR 2.0 genes in this pathway |
MASSARWEH TAMOXIFEN RESISTANCE DN | 258 | 160 | All SZGR 2.0 genes in this pathway |
Massarweh对雌二醇的反应 | 61 | 47 | All SZGR 2.0 genes in this pathway |
肝癌DN中的阿塞维多甲基化 | 940 | 425 | All SZGR 2.0 genes in this pathway |
SMID BREAST CANCER BASAL DN | 701 | 446 | All SZGR 2.0 genes in this pathway |
Bonome卵巢癌的生存次优秀 | 510 | 309 | All SZGR 2.0 genes in this pathway |
BOQUEST STEM CELL UP | 260 | 174 | All SZGR 2.0 genes in this pathway |
对Salirasib dn的Blum响应 | 342 | 220 | All SZGR 2.0 genes in this pathway |
JIANG TIP30 TARGETS UP | 46 | 28 | All SZGR 2.0 genes in this pathway |
VANTVEER BREAST CANCER ESR1 UP | 167 | 99 | All SZGR 2.0 genes in this pathway |
DING LUNG CANCER BY MUTATION RATE | 20 | 18 | All SZGR 2.0 genes in this pathway |
清肝癌子类CTNNB1 UP | 176 | 110 | All SZGR 2.0 genes in this pathway |
YAGI AML WITH INV 16 TRANSLOCATION | 422 | 277 | All SZGR 2.0 genes in this pathway |
Johnstone Parvb目标2 DN | 336 | 211 | All SZGR 2.0 genes in this pathway |
MIYAGAWA TARGETS OF EWSR1 ETS FUSIONS DN | 229 | 135 | All SZGR 2.0 genes in this pathway |
PASINI SUZ12 TARGETS DN | 315 | 215 | All SZGR 2.0 genes in this pathway |
LEE BMP2 TARGETS UP | 745 | 475 | All SZGR 2.0 genes in this pathway |
Winzen通过KHSRP退化 | 100 | 70 | All SZGR 2.0 genes in this pathway |
GOBERT OLIGODENDROCYTE DIFFERENTIATION DN | 1080 | 713 | All SZGR 2.0 genes in this pathway |
ikeda mir30目标 | 116 | 87 | All SZGR 2.0 genes in this pathway |
PLASARI TGFB1 TARGETS 10HR DN | 244 | 157 | All SZGR 2.0 genes in this pathway |
通过p38部分的phong TNF响应 | 160 | 106 | All SZGR 2.0 genes in this pathway |
BMP7的Zhang脂肪形成 | 14 | 12 | All SZGR 2.0 genes in this pathway |
前列腺癌模型DN中的Acevedo FGFR1靶标 | 308 | 187 | All SZGR 2.0 genes in this pathway |
Section VI. microRNA annotation
miRNA family | target position | miRNA ID | mirna seq | ||
---|---|---|---|---|---|
UTR开始 | UTR结束 | 匹配方法 | |||
mir-126/126-3p | 131 | 137 | 1A | HSA-MIR-126brain | UCGUACCGUGAGUAAUAAUGC |
miR-128 | 232 | 239 | 1A,m8 | hsa-miR-128a | UCACAGUGAACCGGUCUCUUUU |
hsa-miR-128b | UCACAGUGAACCGGUCUCUUUC | ||||
miR-145 | 4 | 10 | m8 | HSA-MIR-145 | GUCCAGUUUUCCCAGGAAUCCCUU |
miR-183 | 671 | 678 | 1A,m8 | HSA-MIR-183 | UAUGGCACUGGUAGAAUUCACUG |
miR-200bc/429 | 449 | 455 | 1A | hsa-miR-200b | UAAUACUGCCUGGUAAUGAUGAC |
hsa-miR-200c | UAAUACUGCCGGGUAAUGAUGG | ||||
hsa-miR-429 | UAAUACUGUCUGGUAAAACCGU | ||||
miR-27 | 233 | 239 | m8 | hsa-miR-27abrain | uucacaguggcuaaguuccgc |
hsa-miR-27bbrain | UUCACAGUGGCUAAGUUCUGC | ||||
miR-30-5p | 154 | 160 | m8 | HSA-MIR-30A-5P | UGUAAACAUCCUCGACUGGAAG |
hsa-miR-30cbrain | UGUAAACAUCCUACACUCUCAGC | ||||
hsa-miR-30dSZ | uguaaacauccccgacuggaag | ||||
hsa-miR-30bSZ | uguaaacauccuaccucucagcu | ||||
hsa-miR-30e-5p | UGUAAACAUCCUUGACUGGA | ||||
mir-487b | 132 | 138 | m8 | HSA-MIR-487B | aaucguacagggucauccacuu |
mir-96 | 209 | 215 | m8 | HSA-MIR-96brain | UUUGGCACUAGCACAUUUUUGC |