Gene Page:MCM7
Summary?
GeneID | 4176 |
Symbol | MCM7 |
Synonyms | cdc47 | mcm2 | P1.1-MCM3 | P1CDC47 | P85MCM | PNAS146 | PPP1R104 |
描述 | minichromosome maintenance complex component 7 |
Reference | MIM:600592|HGNC:HGNC:6950|Ensembl:ENSG00000166508|HPRD:01154|Vega:OTTHUMG00000154671 |
基因类型 | 蛋白质编码 |
Map location | 7Q21.3-Q22.1 |
Pascal p-value | 0.461 |
Sherlock p-value | 8.163E-4 |
胎儿β | 2.271 |
DMG | 2(# studies) |
Support | Ascano FMRP targets |
Gene in Data Sources
基因集名称 | Method of gene set | 描述 | 信息 |
---|---|---|---|
DMG:Nishioka_2013 | 全基因组DNA甲基化分析 | 作者研究了来自18例第一期精神分裂症(FESZ)和15个正常对照的18例外周血细胞中DNA的甲基化谱。 | 2 |
DMG:vanEijk_2014 | 全基因组DNA甲基化分析 | This dataset includes 432 differentially methylated CpG sites corresponding to 391 unique transcripts between schizophrenia patients (n=260) and unaffected controls (n=250). | 2 |
PMID:cooccur | High-throughput literature-search | PubMed中的系统搜索与SCZ关键字共发生的基因。总共包括3027个基因。 | |
Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias | 点击显示详细信息 |
Network | Shortest path distance of core genes in the Human protein-protein interaction network | PPI网络中最短路径的贡献:0.013 |
Section I. Genetics and epigenetics annotation
Differentially methylated gene
Probe | 染色体 | 位置 | Nearest gene | p(dis) | β(dis) | fdr(dis) | 学习 |
---|---|---|---|---|---|---|---|
cg26023204 | 7 | 99699378 | MCM7 | -0.02 | 0.87 | DMG:Nishioka_2013 | |
cg13650156 | 7 | 99970502 | MCM7 | 2.22E-6 | 3.895 | DMG:vanEijk_2014 |
第二节。转录组注释
一般基因表达(GTEX)
![Not available](http://www.tjghsg.com/bioinfo/SZGR/GeneImg/MCM7_DE_GTEx.png)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
时间变化的基因表达(brainspan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
所示的栏表示表达分布的较低25%和上层25%。
大脑区域的顶级共表达基因
Top 10 positively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
cnpy2 | 0.86 | 0.81 |
COPS6 | 0.86 | 0.84 |
CCDC56 | 0.86 | 0.86 |
myl6 | 0.86 | 0.83 |
CHMP2A | 0.86 | 0.83 |
PSMA5 | 0.85 | 0.83 |
NHP2 | 0.85 | 0.82 |
SPAG7 | 0.85 | 0.85 |
TOMM5 | 0.85 | 0.84 |
TSTA3 | 0.84 | 0.81 |
Top 10 negatively co-expressed genes | ||
Gene | Pearson's Correlation | Spearman's Correlation |
AF347015.26 | -0.62 | -0.56 |
AF347015.8 | -0.59 | -0.51 |
AF347015.2 | -0.58 | -0.51 |
AF347015.15 | -0.58 | -0.53 |
AF347015.18 | -0.58 | -0.51 |
mt-cyb | -0.56 | -0.52 |
MT-CO2 | -0.56 | -0.47 |
AF347015.33 | -0.56 | -0.50 |
AF347015.27 | -0.55 | -0.52 |
MT-ATP8 | -0.55 | -0.52 |
第三节。基因本体论注释
Molecular function | 去学期 | 证据 | 神经关键字 | PubMed ID |
---|---|---|---|---|
去:0000166 | nucleotide binding | IEA | - | |
去:0003677 | DNA binding | TAS | 15538388 | |
去:0005515 | 蛋白质结合 | IPI | 10518787|15538388|16438930 |
|
去:0005524 | ATP binding | IEA | - | |
GO:0017111 | nucleoside-triphosphatase activity | IEA | - | |
Biological process | 去学期 | 证据 | 神经关键字 | PubMed ID |
GO:0006355 | 调节转录,DNA依赖性的调节 | IEA | - | |
GO:0006350 | 转录 | IEA | - | |
GO:0006270 | 基因复制initiation | IEA | - | |
GO:0006260 | 基因复制 | EXP | 12791985 | |
GO:0006260 | 基因复制 | TAS | 8798650 | |
GO:0007049 | cell cycle | IEA | - | |
去:0006974 | 对DNA损伤刺激的反应 | IMP | 15538388 | |
GO:0042325 | 调节磷酸化 | IMP | 15538388 | |
Cellular component | 去学期 | 证据 | 神经关键字 | PubMed ID |
GO:0000785 | chromatin | TAS | 8798650 | |
去:0005634 | nucleus | IEA | - | |
去:0005654 | nucleoplasm | EXP | 10436018|10846177|11095689 |11931757|12045100 |15226314|15707391 |
|
去:0005737 | cytoplasm | IDA | 18029348 | |
GO:0042555 | MCM complex | IMP | 15538388 |
Section IV. Protein-protein interaction annotation
Interactors | 别名b | 官方全名b | 实验 | Source | PubMed ID |
---|---|---|---|---|---|
ATR | frp1 |mec1 |sckl |SCKL1 | ataxia telangiectasia and Rad3 related | 亲和力捕获 - 韦斯特恩 | Biogrid | 15210935 |
一次旅行 | DKFZp762J2115 | FLJ12343 | MGC20625 | MGC21482 | MGC26740 | ATR interacting protein | 亲和力捕获 - 韦斯特恩 | Biogrid | 15210935 |
CCNH | cak |p34 |p37 | 细胞周期蛋白h | - | HPRD,BioGRID | 11056214 |
CDC45L | CDC45 | CDC45L2 | PORC-PI-1 | CDC45细胞分裂周期45样(酿酒酵母) | - | HPRD,BioGRID | 10518787|12614612 |
CDC6 | CDC18L | HsCDC18 | HsCDC6 | 细胞分裂周期6同源物(S. cerevisiae) | - | HPRD,BioGRID | 10464337|12614612 |
CDC7 | CDC7L1 | HsCDC7 | Hsk1 | MGC117361 | MGC126237 | MGC126238 | huCDC7 | 细胞红利ion cycle 7 homolog (S. cerevisiae) | - | HPRD,BioGRID | 12614612 |
CDK7 | cak1 |CDKN7 |mo15 |STK1 |P39MO15 | cyclin-dependent kinase 7 | - | HPRD,BioGRID | 11056214 |
CNOT8 | CAF1 |加利福尼亚|pop2 |HCAF1 | CCR4-NOT transcription complex, subunit 8 | Affinity Capture-MS | Biogrid | 17353931 |
CRLS1 | C20orf155 C |LS1 | GCD10 | dJ967N21.6 | cardiolipin synthase 1 | - | HPRD | 12771218 |
DBF4 | ASK | CHIF | DBF4A | ZDBF1 | DBF4 homolog (S. cerevisiae) | - | HPRD,BioGRID | 12614612 |
FHL2 | AAG11 |Dral |Slim3 | four and a half LIM domains 2 | - | HPRD,BioGRID | 10649446 |
GIPC1 | C19orf3 | GIPC | GLUT1CBP | Hs.6454 | IIP-1 | MGC15889 | MGC3774 | NIP | RGS19IP1 | SEMCAP | SYNECTIIN | SYNECTIN | TIP-2 | GIPC PDZ domain containing family, member 1 | Affinity Capture-MS | Biogrid | 17353931 |
GSTK1 | GST13 | 谷胱甘肽S-转移酶Kappa 1 | Affinity Capture-MS | Biogrid | 17353931 |
HIST3H3 | H3.4 | H3/g | H3FT | H3t | MGC126886 | MGC126888 | histone cluster 3, H3 | - | HPRD,BioGRID | 8798650 |
ikbkg | AMCBX1 | FIP-3 | FIP3 | Fip3p | IKK-gamma | IP | IP1 | IP2 | IPD2 | NEMO | B细胞,激酶γ中Kappa光多肽基因增强子的抑制剂 | - | HPRD | 14743216 |
mbip | - | MAP3K12 binding inhibitory protein 1 | Two-hybrid | Biogrid | 16189514 |
MCM10 | CNA43 | DNA43 | MGC126776 | PRO2249 | minichromosome maintenance complex component 10 | - | HPRD,BioGRID | 11095689|15232106 |
MCM2 | BM28 | CCNL1 | CDCL1 | D3S3194 | KIAA0030 | MGC10606 | MITOTIN | cdc19 | minichromosome maintenance complex component 2 | 亲和力捕获 - 韦斯特恩 Co-purification in vivo 重构的复合物 Two-hybrid |
Biogrid | 8798650|9099751 |10567526|10748114 |12207017|12614612 |12694531 |
MCM2 | BM28 | CCNL1 | CDCL1 | D3S3194 | KIAA0030 | MGC10606 | MITOTIN | cdc19 | minichromosome maintenance complex component 2 | - | HPRD | 8798650|10567526 |10748114|12207017 |
MCM2 | BM28 | CCNL1 | CDCL1 | D3S3194 | KIAA0030 | MGC10606 | MITOTIN | cdc19 | minichromosome maintenance complex component 2 | - | HPRD | 8798650|10567526 |10748114|12207017|15232106 |
MCM3 | HCC5 |MGC1157 |P1-MCM3 |p1.h |RLFB | minichromosome maintenance complex component 3 | MCM3 interacts with MCM7. | 绑定 | 15236977 |
MCM3 | HCC5 |MGC1157 |P1-MCM3 |p1.h |RLFB | minichromosome maintenance complex component 3 | - | HPRD | 7601140|8631321 |10464337 |
MCM3 | HCC5 |MGC1157 |P1-MCM3 |p1.h |RLFB | minichromosome maintenance complex component 3 | MCM3与MCM7相互作用。 | 绑定 | 15236977 |
MCM3 | HCC5 |MGC1157 |P1-MCM3 |p1.h |RLFB | minichromosome maintenance complex component 3 | 亲和力捕获 - 韦斯特恩 Co-fractionation Two-hybrid |
Biogrid | 9099751|10464337 |11779870|12614612 |
MCM4 | cdc21 |cdc54 |MGC33310 |P1-CDC21 |HCDC21 | minichromosome maintenance complex component 4 | 亲和力捕获 - 韦斯特恩 in vivo 重构的复合物 |
Biogrid | 8798650|9099751 |10748114|12207017 |12694531 |
MCM4 | cdc21 |cdc54 |MGC33310 |P1-CDC21 |HCDC21 | minichromosome maintenance complex component 4 | Mcm4 interacts with Mcm7. | 绑定 | 15236977 |
MCM4 | cdc21 |cdc54 |MGC33310 |P1-CDC21 |HCDC21 | minichromosome maintenance complex component 4 | - | HPRD | 7601140|8631321 |8798650|10567526 |10748114|12207017 |
MCM4 | cdc21 |cdc54 |MGC33310 |P1-CDC21 |HCDC21 | minichromosome maintenance complex component 4 | MCM4与MCM7相互作用。 | 绑定 | 15236977 |
MCM5 | CDC46 | MGC5315 | P1-CDC46 | minichromosome maintenance complex component 5 | 亲和力捕获 - 韦斯特恩 Two-hybrid |
Biogrid | 9099751|11248027 |12614612 |
MCM5 | CDC46 | MGC5315 | P1-CDC46 | minichromosome maintenance complex component 5 | - | HPRD | 9099751|12614612 |
MCM6 | MCG40308 |MIS5 |P105MCM | minichromosome maintenance complex component 6 | - | HPRD | 8798650|10567526 |10748114|12207017 |
MCM6 | MCG40308 |MIS5 |P105MCM | minichromosome maintenance complex component 6 | 亲和力捕获 - 韦斯特恩 in vivo 重构的复合物 Two-hybrid |
Biogrid | 8798650|9099751 |10748114|12207017 |12614612|12694531 |
MCM6 | MCG40308 |MIS5 |P105MCM | minichromosome maintenance complex component 6 | - | HPRD | 8798650|10567526 |10748114|12207017|12694531 |
MCM7 | CDABP0042 | CDC47 | MCM2 | P1.1-MCM3 | P1CDC47 | P85MCM | PNAS-146 | minichromosome maintenance complex component 7 | Mcm7 interacts with itself. | 绑定 | 15236977 |
MCM7 | CDABP0042 | CDC47 | MCM2 | P1.1-MCM3 | P1CDC47 | P85MCM | PNAS-146 | minichromosome maintenance complex component 7 | 重构的复合物 Two-hybrid |
Biogrid | 12614612|12694531 |
MCM8 | C20ORF154 |MGC119522 |MGC119523 |MGC12866 |MGC4816 |rec |DJ967N21.5 | minichromosome maintenance complex component 8 | - | HPRD,BioGRID | 12771218 |
MNAT1 | Mat1 |RNF66 |TFB3 | Menage A Trois同源物1,细胞周期蛋白H装配因子(Xenopus laevis) | - | HPRD,BioGRID | 11056214 |
我的C | Bhlhe39 |c-myc | V-myc骨髓质体病毒性癌基因同源物(禽类) | Affinity Capture-MS | Biogrid | 17353931 |
NEK6 | SID6-1512 | NIMA (never in mitosis gene a)-related kinase 6 | Affinity Capture-MS | Biogrid | 17353931 |
NFKBIA | IKBA | MAD-3 | NFKBI | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha | - | HPRD | 14743216 |
ORC1L | HSORC1 | ORC1 | PARC1 | origin recognition complex, subunit 1-like (yeast) | - | HPRD,BioGRID | 12614612 |
ORC2L | ORC2 | 起源识别综合体,亚基2样(酵母) | - | HPRD,BioGRID | 12614612 |
ORC3L | 拉特|Latheo |ORC3 | 起源识别综合体,亚基3式(酵母) | - | HPRD,BioGRID | 12614612 |
ORC5L | ORC5 |ORC5P |ORC5T | origin recognition complex, subunit 5-like (yeast) | - | HPRD,BioGRID | 12614612 |
PELO | CGI-17 | PRO1770 | pelota homolog (Drosophila) | Affinity Capture-MS | Biogrid | 17353931 |
RB1 | OSRC |RB |P105-RB |PRB |PP110 | retinoblastoma 1 | - | HPRD,BioGRID | 9566894 |
RB1 | OSRC |RB |P105-RB |PRB |PP110 | retinoblastoma 1 | MCM7与RB相互作用。 | 绑定 | 9566894 |
RBL1 | CP107 | MGC40006 | PRB1 | p107 | 视网膜母细胞瘤状1(p107) | - | HPRD,BioGRID | 9566894 |
RBL1 | CP107 | MGC40006 | PRB1 | p107 | 视网膜母细胞瘤状1(p107) | MCM7interacts with p107. | 绑定 | 9566894 |
RBL2 | FLJ26459 | P130 | Rb2 | 视网膜母细胞瘤样2(P130) | - | HPRD,BioGRID | 9566894 |
RBL2 | FLJ26459 | P130 | Rb2 | 视网膜母细胞瘤样2(P130) | MCM7interacts with p130. | 绑定 | 9566894 |
RBM8A | BOV-1A | BOV-1B | BOV-1C | MDS014 | RBM8 | RBM8B | Y14 | ZNRP | ZRNP1 | RNA binding motif protein 8A | Two-hybrid | Biogrid | 16189514 |
RPA1 | HSSB |repa1 |RF-A |RP-A |RPA70 | 复制蛋白A1,70KDA | - | HPRD,BioGRID | 12614612 |
Th1L | HSPC130 |Nelf-C |Nelf-D |Th1 | Th1-like (Drosophila) | Affinity Capture-MS | Biogrid | 17353931 |
TRAF6 | MGC:3310 | RNF85 | TNF receptor-associated factor 6 | Affinity Capture-MS | Biogrid | 17353931 |
TREX1 | AGS1 | AGS5 | CRV | DKFZp434J0310 | DRN3 | HERNS | three prime repair exonuclease 1 | - | HPRD | 15210935 |
UBE3A | ancr |AS |e6-ap |epve6ap |FLJ26981 |HPVE6A | ubiquitin protein ligase E3A | - | HPRD,BioGRID | 9852095 |