SZGR2 - Beplay体育中心

概括?

GeneID	4857
Symbol	NOVA1
同义词	Nova-1
描述	neuro-oncological ventral antigen 1
参考	MIM：602157\|HGNC:HGNC:7886\|Ensembl:ENSG00000139910\|HPRD:03693\|Vega:OTTHUMG00000029385
Gene type	protein-coding
Map location	14q
Pascal p-value	0.015
Sherlock P值	0.681
Fetal beta	-0.383

数据源中的基因

Gene set name	Method of gene set	描述	Info
CV：GWASDB	全基因组关联研究	gwasdbrecords for schizophrenia
CV:PGCnp	Genome-wide Association Study	GWAS
PMID:cooccur	高通量文献搜索	系统搜索PubMed co-o基因ccurring with SCZ keywords. A total of 3027 genes were included.
GSMA_I	基因组扫描荟萃分析	Psr: 0.047
文学	高通量文献搜索	与精神分裂症关键词共同存在：精神分裂症，精神分裂症	Click to show details
GO_Annotation	Mapping neuro-related keywords to Gene Ontology annotations	Hits with neuro-related keywords: 1

第一节遗传学和表观遗传学注释

Section II. Transcriptome annotation

General gene expression (GTEx)

Gene expression during devlopment (BrainCloud)

脚注：
总共绘制了269个时间点，n = 38个胎儿样品（x = 1：38）。每个三角形代表一个时间点。

Gene expression of temporal and spatial changes (BrainSpan)

脚注：
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

大脑区域没有共表达基因

Section III. Gene Ontology annotation

Molecular function	去的术语	Evidence	Neuro keywords	PubMed ID
去：0003729	mRNA binding	IEA		-
GO:0005515	protein binding	IEA		-
Biological process	去的术语	Evidence	Neuro keywords	PubMed ID
GO:0007268	突触传输	塔斯	neuron, Synap, Neurotransmitter (GO term level: 6)	8558240
GO:0000398	nuclear mRNA splicing, via spliceosome	IEA		-
GO:0008380	RNA splicing	塔斯		8398153
GO:0007626	locomotory behavior	塔斯		8558240
细胞分量	去的术语	Evidence	Neuro keywords	PubMed ID
GO:0005634	核	IEA		-
GO:0005730	nucleolus	IDA		18029348

V.途径注释

Pathway name	Pathway size	＃szgr 2.0基因	Info
周的炎症反应fima	544	308	该途径中的所有SZGR 2.0基因
KOYAMA SEMA3B TARGETS UP	292	168	该途径中的所有SZGR 2.0基因
KOYAMA SEMA3B TARGETS DN	411	249	该途径中的所有SZGR 2.0基因
ACEVEDO LIVER CANCER WITH H3K9ME3 UP	141	75	该途径中的所有SZGR 2.0基因
SMID BREAST CANCER LUMINAL B UP	172	109	该途径中的所有SZGR 2.0基因
SMID BREAST CANCER BASAL DN	701	446	该途径中的所有SZGR 2.0基因
巴索毛毛细胞白血病DN	80	66	该途径中的所有SZGR 2.0基因
BOQUEST STEM CELL UP	260	174	该途径中的所有SZGR 2.0基因
BOQUEST STEM CELL CULTURED VS FRESH UP	425	298	该途径中的所有SZGR 2.0基因
NAKAMURA ADIPOGENESIS LATE UP	104	67	该途径中的所有SZGR 2.0基因
BROWNE HCMV INFECTION 30MIN DN	150	99	该途径中的所有SZGR 2.0基因
BRUINS UVC RESPONSE LATE	1137	655	该途径中的所有SZGR 2.0基因
IKEDA MIR30 TARGETS UP	116	87	该途径中的所有SZGR 2.0基因
RATTENBACHER BOUND BY CELF1	467	251	该途径中的所有SZGR 2.0基因
DURAND STROMA S UP	297	194	该途径中的所有SZGR 2.0基因

Section VI. microRNA annotation

miRNA family	Target position			mirna id	miRNA seq
miRNA family	UTR start	UTR end	Match method	mirna id	miRNA seq
let-7/98	1423	1429	m8	HSA-LET-7A^脑	UGAGGUAGUAGGUUGUAUAGUU
				HSA-LET-7B^脑	UGAGGUAGUAGGUUGUGUGGUU
				HSA-LET-7C^脑	UGAGGUAGUAGGUUGUAUGGUU
				HSA-LET-7D^脑	agagguaguagguugcauagu
				HSA-LET-7E^脑	UGAGGUAGGAGGUUGUAUAGU
				HSA-LET-7F^脑	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^脑	UGAGGUAGUAAGUUGUAUUGUU
				HSA-LET-7G^SZ	UGAGGUAGUAGUUUGUACAGU
				HSA-LET-7I^脑	UGAGGUAGUAGUUUGUGCUGU
miR-101	61	68	1A,m8	HSA-MIR-101	UACAGUACUGUGAUAACUGAAG
miR-103/107	631	638	1A,m8	HSA-MIR-103^脑	AGCAGCAUUGUACAGGGCUAUGA
miR-103/107	631	638	1A,m8	HSA-MIR-107^脑	agcagcauuguacgggcuauca
mir-128	1610	1616年	1A	HSA-MIR-128A	UCACAGUGAACCGGUCUCUUUU
				HSA-MIR-128B	UCACAGUGAACCGGUCUCUUUC
				HSA-MIR-128A	UCACAGUGAACCGGUCUCUUUU
				HSA-MIR-128B	UCACAGUGAACCGGUCUCUUUC
miR-132/212	362	368	1A	HSA-MIR-212^SZ	uaacagucuccagucacgccc
				hsa-miR-132^脑	uaacagucuacccaugggg
				HSA-MIR-212^SZ	uaacagucuccagucacgccc
				hsa-miR-132^脑	uaacagucuacccaugggg
mir-137	506	513	1A,m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
mir-138	274	280	1A	hsa-miR-138^脑	AGCUGGUGUUGUGAAUC
mir-143	1475	1481	1A	hsa-miR-143^脑	UGAGAUGAAGCACUGUAGCUCA
mir-144	62	68	1A	hsa-miR-144	uacaguauagauguauguaguag
mir-146	1834	1840	m8	hsa-miR-146a	UGAGAACUGAAUUCCAUGGGUU
				hsa-miR-146b^脑	UGAGAACUGAAUUCCAUAGGCU
				hsa-miR-146a	UGAGAACUGAAUUCCAUGGGUU
				hsa-miR-146b^脑	UGAGAACUGAAUUCCAUAGGCU
miR-148/152	733	739	1A	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^脑	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
mir-153	108	114	1A	hsa-miR-153	Uugcauagucacaaaaguga
mir-155	277	283	m8	hsa-miR-155	UUAAUGCUAAUCGUGAUAGGGG
mir-181	299	306	1A,m8	hsa-miR-181a^脑	aacauucaacgcugucggugagu
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^脑	aacauucaaccugucggugagu
				hsa-miR-181d^脑	AACAUUCAUUGUUGUCGGUGGGUU
				hsa-miR-181a^脑	aacauucaacgcugucggugagu
				hsa-miR-181b^SZ	AACAUUCAUUGCUGUCGGUGGG
				hsa-miR-181c^脑	aacauucaaccugucggugagu
				hsa-miR-181d^脑	AACAUUCAUUGUUGUCGGUGGGUU
miR-188	310	316	1A	hsa-miR-188	CAUCCCUUGCAUGGUGGAGGGU
mir-193	763	770	1A,m8	hsa-miR-193a	Aacuggccuacaaagucccag
mir-193	763	770	1A,m8	hsa-miR-193b	AACUGGCCCUCAAAGUCCCGCUUU
MiR-200BC/429	1128	1134	m8	HSA-MIR-200B	UAAUACUGCCUGGUAAUGAUGAC
				HSA-MIR-200C	uaauacugccggguaaugaugg
				HSA-MIR-429	uaauacuguguguguguguaaaaaccgu
miR-203.1	1212	1218	1A	HSA-MIR-203	UGAAAUGUUUAGGACCACUAG
miR-203.1	1212	1218	1A	HSA-MIR-203	UGAAAUGUUUAGGACCACUAG
miR-204/211	1874年	1881年	1A,m8	HSA-MIR-204^脑	Uucccuuugucauccuaugccu
miR-204/211	1874年	1881年	1A,m8	HSA-MIR-211	uucccuuugucauccuucgccu
miR-208	1389	1395	1A	HSA-MIR-208	AUAAGACGAGCAAAAAGCUUGU
miR-217	1384	1390	m8	HSA-MIR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-221/222	2066	2073	1A,m8	HSA-MIR-221^脑	AGCUACAUUGUCUGCUGGGUUUC
miR-221/222	2066	2073	1A,m8	HSA-MIR-222^脑	AGCUACAUCUGGCUACUGGGUCUC
miR-25/32/92/363/367	1687年	1693年	m8	HSA-MIR-25^脑	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-26	1713	1719	1A	hsa-miR-26a^脑	Uucaaguaauccaggauaggc
miR-26	1713	1719	1A	hsa-miR-26b^SZ	uucaaguaauucaggauagguu
miR-27	1610	1616年	m8	hsa-miR-27a^脑	UUCACAGUGGCUAAGUUCCGC
				hsa-miR-27b^脑	UUCACAGUGGCUAAGUUCUGC
				hsa-miR-27a^脑	UUCACAGUGGCUAAGUUCCGC
				hsa-miR-27b^脑	UUCACAGUGGCUAAGUUCUGC
miR-30-5p	577	583	1A	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				HSA-MIR-30C^脑	uguaaacauccuacucucucucucagc
				HSA-MIR-30D^SZ	uguaaacauccccgacuggaag
				HSA-MIR-30B^SZ	UGUAAACAUCCUACACUCAGCU
				HSA-MIR-30E-5P	uguaaacauccuugacugga
miR-338	1416	1422	m8	HSA-MIR-338^脑	UCCAGCAUCAGUGAUUUUGUUGA
miR-338	1416	1422	m8	HSA-MIR-338^脑	UCCAGCAUCAGUGAUUUUGUUGA
miR-339	307	314	1A,m8	HSA-MIR-339	UCCCUGUCCUCCAGGAGCUCA
mir-361	879	885	1A	hsa-miR-361^脑	UUAUCAGAAUCUCCAGGGGUAC
miR-369-3p	2021	2027	1A	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
mir-374	2021	2027	m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
mir-374	2021	2027	m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
mir-384	459	465	1A	hsa-miR-384	AUUCCUAGAAAUUGUUCAUA
miR-433-3p	1626年	1632年	1A	HSA-MIR-433^脑	AUCAUGAUGGGCUCCUCGGUGU
miR-448	108	114	1A	HSA-MIR-448	uugcauauguaggauguccccau
miR-485-5p	1596	1602	m8	HSA-MIR-485-5p	AGAGGCUGGCCGUGAUGAAUUC
mir-494	169	176	1A,m8	hsa-miR-494^脑	UGAAACAUACACGGGAAACCUCUU
mir-494	169	176	1A,m8	hsa-miR-494^脑	UGAAACAUACACGGGAAACCUCUU
mir-495	950	956	1A	hsa-miR-495^脑	AAACAAACAUGGUGCACUUCUUU
mir-496	144	150	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
mir-499	1388	1395	1A,m8	hsa-miR-499	uuaagacuugcagugauguuaa
mir-542-3p	1249	1255	m8	hsa-miR-542-3p	ugugacauugauaacugaaa
miR-544	72	78	m8	HSA-MIR-544	AUUCUGCAUUUUUAGCAAGU
miR-96	858	864	m8	hsa-miR-96^脑	UUUGGCACUAGCACAUUUUUGC
miR-96	858	864	m8	hsa-miR-96^脑	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click这里查看与SZ相关的miRNA列表。
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click这里to see the list of brain related miRNAs.

Gene Page:NOVA1