Gene Page:OMD

Summary?
GeneID 4958
Symbol OMD
Synonyms OSAD|SLRR2C
Description osteomodulin
Reference HGNC:HGNC:8134|Ensembl:ENSG00000127083|HPRD:10128|Vega:OTTHUMG00000020225
Gene type protein-coding
Map location 9q22.31
Pascal p-value 0.08
Fetal beta -0.865
eGene Myers' cis & trans

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:PGCnp Genome-wide Association Study GWAS
PMID:cooccur High-throughput literature-search Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included.
Literature High-throughput literature-search 与精神分裂症Co-occurance关键词:schizophrenia,schizophrenic,schizophrenias Click to show details

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP ID Chromosome Position eGene Gene Entrez ID pvalue qvalue TSS distance eQTL type
rs17131472 chr1 91962966 OMD 4958 0.01 trans
rs546975 chr1 91963738 OMD 4958 0.02 trans
rs6761668 chr2 16545352 OMD 4958 0.11 trans
rs17535450 chr2 39900012 OMD 4958 0.05 trans
rs6710894 chr2 66876700 OMD 4958 0.05 trans
rs17821815 chr2 119018522 OMD 4958 0.09 trans
rs17616252 chr2 167976691 OMD 4958 0.02 trans
rs11706314 chr3 45309716 OMD 4958 0.01 trans
rs11706394 chr3 45309907 OMD 4958 0.02 trans
rs1691463 chr3 84914366 OMD 4958 0.01 trans
rs9288980 chr3 112964991 OMD 4958 0.2 trans
rs3995908 chr3 112998529 OMD 4958 0.2 trans
rs7652801 chr3 113008605 OMD 4958 0.2 trans
rs2922180 chr3 125280472 OMD 4958 6.383E-5 trans
rs2976809 chr3 125451738 OMD 4958 8.238E-4 trans
rs9917710 chr3 176280218 OMD 4958 0.17 trans
rs16889842 chr4 9872012 OMD 4958 0.12 trans
rs7668550 chr4 104384355 OMD 4958 0.09 trans
rs3796892 chr4 111404774 OMD 4958 0.13 trans
rs313946 chr4 113975904 OMD 4958 0.01 trans
rs657141 chr4 113981041 OMD 4958 0.01 trans
rs10050805 chr5 30805352 OMD 4958 0.04 trans
rs10041298 chr5 52214802 OMD 4958 0.19 trans
rs16894149 chr5 61013724 OMD 4958 0.07 trans
rs6449550 chr5 61034312 OMD 4958 0.01 trans
rs2080945 chr5 129100423 OMD 4958 0.01 trans
rs6874540 chr5 149911669 OMD 4958 0.08 trans
rs2273232 chr5 149912526 OMD 4958 0.08 trans
rs17056435 chr5 158453782 OMD 4958 0.01 trans
rs9313797 chr5 158465457 OMD 4958 0.15 trans
rs17056474 chr5 158468105 OMD 4958 0.15 trans
rs17135501 chr6 2704474 OMD 4958 0.19 trans
rs17135521 chr6 2707631 OMD 4958 0.19 trans
snp_a-1787926 0 OMD 4958 0.19 trans
rs2294262 chr6 16108966 OMD 4958 0.06 trans
rs4236095 chr6 47368686 OMD 4958 0.12 trans
rs6920042 chr6 67907570 OMD 4958 0.02 trans
rs6939897 chr6 67913123 OMD 4958 0.03 trans
rs6455226 chr6 67930295 OMD 4958 3.897E-4 trans
rs17156987 chr7 28704217 OMD 4958 0.06 trans
snp_a-2266657 0 OMD 4958 0.02 trans
rs2430483 chr7 104548631 OMD 4958 0.02 trans
rs3823550 chr7 137346101 OMD 4958 0.08 trans
rs2199402 chr8 9201002 OMD 4958 0.01 trans
rs2169384 chr8 9216985 OMD 4958 0.13 trans
rs7841407 chr8 9243427 OMD 4958 0.01 trans
rs2253777 chr9 93467893 OMD 4958 0.09 trans
rs2061799 chr9 97795003 OMD 4958 0.13 trans
rs1999431 chr9 107564675 OMD 4958 0.1 trans
rs998410 chr9 117622673 OMD 4958 0.04 trans
rs9423711 chr10 2574802 OMD 4958 4.351E-4 trans
rs748375 chr10 33440178 OMD 4958 0.17 trans
rs4514358 chr10 43861923 OMD 4958 5.209E-4 trans
rs11820030 chr11 76133564 OMD 4958 0.04 trans
rs17134872 chr11 76139845 OMD 4958 0.01 trans
rs10751255 0 OMD 4958 0.01 trans
rs11236774 chr11 76234952 OMD 4958 0.01 trans
rs10502229 chr11 117979969 OMD 4958 0.11 trans
rs11216779 chr11 118002371 OMD 4958 0.19 trans
rs10879027 chr12 70237156 OMD 4958 0.01 trans
rs11112163 chr12 105072508 OMD 4958 0.01 trans
rs9551590 chr13 29589464 OMD 4958 0.12 trans
rs4942043 chr13 41978218 OMD 4958 0.19 trans
rs1750009 chr13 42657093 OMD 4958 0.19 trans
rs9529974 chr13 72821935 OMD 4958 0.01 trans
rs17720221 chr13 75182377 OMD 4958 0.07 trans
rs11840833 chr13 94378306 OMD 4958 0.06 trans
rs17657985 chr13 100499573 OMD 4958 0.14 trans
rs10142086 chr14 35135892 OMD 4958 0.13 trans
rs1951867 chr14 54407191 OMD 4958 0.14 trans
rs1457420 chr14 66958675 OMD 4958 0.15 trans
rs12880065 chr14 70747905 OMD 4958 0.13 trans
rs10149864 chr14 86719683 OMD 4958 0 trans
rs2093759 chr14 97171024 OMD 4958 0.02 trans
rs17244419 chr14 97171074 OMD 4958 0 trans
rs7177212 chr15 34425413 OMD 4958 0.14 trans
rs305050 chr15 70089797 OMD 4958 0.08 trans
rs11073814 chr15 89378883 OMD 4958 0.1 trans
rs7165622 chr15 93979910 OMD 4958 0.1 trans
rs17294918 chr16 52717122 OMD 4958 0.13 trans
rs17841422 chr17 20969134 OMD 4958 0.07 trans
rs7242943 chr18 37499379 OMD 4958 0.16 trans
rs7236407 chr18 47827597 OMD 4958 0.19 trans
rs4987765 chr18 60905021 OMD 4958 0.01 trans
rs11873703 chr18 61448702 OMD 4958 1.299E-5 trans
rs6095741 chr20 48666589 OMD 4958 1.86E-5 trans
rs6000401 chr22 37149335 OMD 4958 0.13 trans
rs5991662 chrX 43335796 OMD 4958 6.137E-4 trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
REACTOME KERATAN SULFATE BIOSYNTHESIS 26 18 All SZGR 2.0 genes in this pathway
REACTOME KERATAN SULFATE KERATIN METABOLISM 30 21 All SZGR 2.0 genes in this pathway
REACTOME KERATAN SULFATE DEGRADATION 11 7 All SZGR 2.0 genes in this pathway
REACTOME GLYCOSAMINOGLYCAN METABOLISM 111 69 All SZGR 2.0 genes in this pathway
REACTOME METABOLISM OF CARBOHYDRATES 247 154 All SZGR 2.0 genes in this pathway
THUM SYSTOLIC HEART FAILURE UP 423 283 All SZGR 2.0 genes in this pathway
VECCHI GASTRIC CANCER EARLY DN 367 220 All SZGR 2.0 genes in this pathway
NADERI BREAST CANCER PROGNOSIS DN 18 13 All SZGR 2.0 genes in this pathway
GAUSSMANN MLL AF4 FUSION TARGETS B UP 26 16 All SZGR 2.0 genes in this pathway
BEGUM TARGETS OF PAX3 FOXO1 FUSION UP 60 45 All SZGR 2.0 genes in this pathway
INGRAM SHH TARGETS UP 127 79 All SZGR 2.0 genes in this pathway
BERTUCCI INVASIVE CARCINOMA DUCTAL VS LOBULAR DN 46 34 All SZGR 2.0 genes in this pathway
RICKMAN HEAD AND NECK CANCER B 48 22 All SZGR 2.0 genes in this pathway
BYSTRYKH HEMATOPOIESIS STEM CELL QTL TRANS 882 572 All SZGR 2.0 genes in this pathway
KRASNOSELSKAYA ILF3 TARGETS UP 38 24 All SZGR 2.0 genes in this pathway
XU GH1 AUTOCRINE TARGETS UP 268 157 All SZGR 2.0 genes in this pathway
BROWNE HCMV INFECTION 6HR UP 71 48 All SZGR 2.0 genes in this pathway
SMID BREAST CANCER LUMINAL A UP 84 52 All SZGR 2.0 genes in this pathway
SMID BREAST CANCER BASAL DN 701 446 All SZGR 2.0 genes in this pathway
BOCHKIS FOXA2 TARGETS 425 261 All SZGR 2.0 genes in this pathway
BOQUEST STEM CELL UP 260 174 All SZGR 2.0 genes in this pathway
BOQUEST STEM CELL CULTURED VS FRESH UP 425 298 All SZGR 2.0 genes in this pathway
BOQUEST STEM CELL CULTURED VS FRESH DN 31 25 All SZGR 2.0 genes in this pathway
WEST ADRENOCORTICAL TUMOR DN 546 362 All SZGR 2.0 genes in this pathway
GRESHOCK CANCER COPY NUMBER UP 323 240 All SZGR 2.0 genes in this pathway
SWEET LUNG CANCER KRAS DN 435 289 All SZGR 2.0 genes in this pathway
YAGI AML WITH INV 16 TRANSLOCATION 422 277 All SZGR 2.0 genes in this pathway
WANG MLL TARGETS 289 188 All SZGR 2.0 genes in this pathway
NABA PROTEOGLYCANS 35 23 All SZGR 2.0 genes in this pathway
NABA CORE MATRISOME 275 148 All SZGR 2.0 genes in this pathway
NABA MATRISOME 1028 559 All SZGR 2.0 genes in this pathway