Gene Page:VTA1

Summary?
GeneID 51534
Symbol VTA1
Synonyms C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1
Description vesicle (multivesicular body) trafficking 1
Reference MIM:610902|HGNC:HGNC:20954|Ensembl:ENSG00000009844|HPRD:09855|
Gene type protein-coding
Map location 6q24.1
Pascal p-value 0.274
Sherlock p-value 0.856
Fetal beta 0.625
eGene Myers' cis & trans
元

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:GWASdb Genome-wide Association Studies GWASdb records for schizophrenia
CV:PGCnp Genome-wide Association Study GWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP ID Chromosome Position eGene Gene Entrez ID pvalue qvalue TSS distance eQTL type
rs10994209 chr10 61877705 VTA1 51534 0.05 trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 -26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section IV. Protein-protein interaction annotation

Interactors Aliases B Official full name B Experimental Source PubMed ID
CBS HIP4 cystathionine-beta-synthase Two-hybrid BioGRID 16189514
CDK4 CMM3 | MGC14458 | PSK-J3 cyclin-dependent kinase 4 Two-hybrid BioGRID 16189514
DPPA2 PESCRG1 developmental pluripotency associated 2 Two-hybrid BioGRID 16189514
KCTD13 FKSG86 | PDIP1 | POLDIP1 potassium channel tetramerisation domain containing 13 Two-hybrid BioGRID 16189514
KLHL12 C3IP1 | DKIR | FLJ27152 kelch-like 12 (Drosophila) Two-hybrid BioGRID 16189514
LYST CHS | CHS1 lysosomal trafficking regulator Two-hybrid BioGRID 11984006
MAGEA11 MAGE-11 | MAGE11 | MAGEA-11 | MGC10511 melanoma antigen family A, 11 Two-hybrid BioGRID 16189514
MBIP - MAP3K12 binding inhibitory protein 1 Two-hybrid BioGRID 16189514
NBR1 1A1-3B | KIAA0049 | M17S2 | MIG19 neighbor of BRCA1 gene 1 Two-hybrid BioGRID 16189514
NECAB2 EFCBP2 N-terminal EF-hand calcium binding protein 2 Two-hybrid BioGRID 16189514
RABAC1 PRA1 | PRAF1 | YIP3 Rab acceptor 1 (prenylated) Two-hybrid BioGRID 16189514
RPIA RPI ribose 5-phosphate isomerase A Two-hybrid BioGRID 16189514
SSSCA1 p27 Sjogren syndrome/scleroderma autoantigen 1 Two-hybrid BioGRID 16189514
ZBTB16 PLZF | ZNF145 zinc finger and BTB domain containing 16 Two-hybrid BioGRID 16189514


Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
KEGG ENDOCYTOSIS 183 132 All SZGR 2.0 genes in this pathway
REACTOME MEMBRANE TRAFFICKING 129 74 All SZGR 2.0 genes in this pathway
REACTOME ENDOSOMAL SORTING COMPLEX REQUIRED FOR TRANSPORT ESCRT 27 15 All SZGR 2.0 genes in this pathway
OSMAN BLADDER CANCER UP 404 246 All SZGR 2.0 genes in this pathway
RODRIGUES THYROID CARCINOMA ANAPLASTIC UP 722 443 All SZGR 2.0 genes in this pathway
GAUSSMANN MLL AF4 FUSION TARGETS G UP 238 135 All SZGR 2.0 genes in this pathway
BENPORATH CYCLING GENES 648 385 All SZGR 2.0 genes in this pathway
KUMAR TARGETS OF MLL AF9 FUSION 405 264 All SZGR 2.0 genes in this pathway
IVANOVA HEMATOPOIESIS STEM CELL AND PROGENITOR 681 420 All SZGR 2.0 genes in this pathway
MARSON BOUND BY FOXP3 UNSTIMULATED 1229 713 All SZGR 2.0 genes in this pathway
ACEVEDO LIVER CANCER DN 540 340 All SZGR 2.0 genes in this pathway
张核心血清反应 212 128 All SZGR 2.0 genes in this pathway
WENDT COHESIN TARGETS UP 33 19 All SZGR 2.0 genes in this pathway
WHITFIELD CELL CYCLE G2 182 102 All SZGR 2.0 genes in this pathway
BRUINS UVC RESPONSE LATE 1137 655 All SZGR 2.0 genes in this pathway