基因页：SLC35F2
Summary？
| 基因 | 54733 |
| 象征 | SLC35F2 |
| 同义词 | HSNOV1 |
| 描述 | Solute Carrier家族35会员F2 |
| Reference | HGNC：HGNC：23615|ENSEMBL：ENSG00000110660|HPRD：15377|Vega：Otthumg00000166366 |
| 基因类型 | 蛋白质编码 |
| 地图位置 | 11q22.3 |
| Pascal P值 | 0.076 |
| 胎儿β | 2.56 |
| 主持人 | 尾状基底神经节 小脑半球 Hypothalamus 伏隔核基底神经节 硬膜基底ganglia Myers' cis & trans |
Gene in Data Sources
| 基因集名称 | 基因组方法 | 描述 | 信息 |
|---|---|---|---|
| 简历：Gwascat | Genome-wide Association Studies | 该数据集包括与精神分裂症相关的560个SNP。总共将486个基因映射到50kb内的这些SNP。 | |
| CV:GWASdb | Genome-wide Association Studies | 精神分裂症的GWASDB记录 | |
| 简历：PGCNP | 全基因组协会研究 | GWAS | |
| GSMA_I | Genome scan meta-analysis | Psr: 0.006 |
Section I. Genetics and epigenetics annotation
EQTL注释
EQTL注释| SNP ID | 染色体 | 位置 | 主持人 | Gene Entrez ID | PVALUE | QVALUE | TSS距离 | EQTL类型 |
|---|---|---|---|---|---|---|---|---|
| RS13403353 | CHR2 | 144067716 | SLC35F2 | 54733 | 0.09 | 反式 | ||
| rs11212366 | 11 | 107646430 | SLC35F2 | ENSG00000110660.10 | 4.94E-7 | 0 | 152589 | gtex_brain_putamen_basal |
| RS11212405 | 11 | 107712020 | SLC35F2 | ENSG00000110660.10 | 9.104e-13 | 0 | 86999 | gtex_brain_putamen_basal |
| RS12221840 | 11 | 107712430 | SLC35F2 | ENSG00000110660.10 | 2.425e-10 | 0 | 86589 | gtex_brain_putamen_basal |
| rs397957133 | 11 | 107715256 | SLC35F2 | ENSG00000110660.10 | 6.003E-9 | 0 | 83763 | gtex_brain_putamen_basal |
| RS4753819 | 11 | 107715569 | SLC35F2 | ENSG00000110660.10 | 2.293E-12 | 0 | 83450 | gtex_brain_putamen_basal |
| rs4753820 | 11 | 107715745 | SLC35F2 | ENSG00000110660.10 | 2.091E-9 | 0 | 83274 | gtex_brain_putamen_basal |
| RS12278174 | 11 | 107716112 | SLC35F2 | ENSG00000110660.10 | 8.194E-13 | 0 | 82907 | gtex_brain_putamen_basal |
| RS10890766 | 11 | 107716445 | SLC35F2 | ENSG00000110660.10 | 1.198E-8 | 0 | 82574 | gtex_brain_putamen_basal |
| RS10890767 | 11 | 107716611 | SLC35F2 | ENSG00000110660.10 | 7.13e-12 | 0 | 82408 | gtex_brain_putamen_basal |
| RS10890768 | 11 | 107716624 | SLC35F2 | ENSG00000110660.10 | 1.834E-11 | 0 | 82395 | gtex_brain_putamen_basal |
| RS10890769 | 11 | 107716874 | SLC35F2 | ENSG00000110660.10 | 2.293E-12 | 0 | 82145 | gtex_brain_putamen_basal |
| RS11212408 | 11 | 107717100 | SLC35F2 | ENSG00000110660.10 | 2.293E-12 | 0 | 81919 | gtex_brain_putamen_basal |
| RS58034440 | 11 | 107717642 | SLC35F2 | ENSG00000110660.10 | 3.876E-7 | 0 | 81377 | gtex_brain_putamen_basal |
| RS10890770 | 11 | 107718428 | SLC35F2 | ENSG00000110660.10 | 2.293E-12 | 0 | 80591 | gtex_brain_putamen_basal |
| RS10789638 | 11 | 107718486 | SLC35F2 | ENSG00000110660.10 | 9.074e-13 | 0 | 80533 | gtex_brain_putamen_basal |
| RS7949443 | 11 | 107719003 | SLC35F2 | ENSG00000110660.10 | 3.293E-12 | 0 | 80016 | gtex_brain_putamen_basal |
| rs7952723 | 11 | 107719329 | SLC35F2 | ENSG00000110660.10 | 5.331E-13 | 0 | 79690 | gtex_brain_putamen_basal |
| RS7102437 | 11 | 107720191 | SLC35F2 | ENSG00000110660.10 | 2.843e-12 | 0 | 78828 | gtex_brain_putamen_basal |
| RS7121733 | 11 | 107720226 | SLC35F2 | ENSG00000110660.10 | 6.835E-13 | 0 | 78793 | gtex_brain_putamen_basal |
| rs4753821 | 11 | 107720941 | SLC35F2 | ENSG00000110660.10 | 5.331E-13 | 0 | 78078 | gtex_brain_putamen_basal |
| RS12418609 | 11 | 107721506 | SLC35F2 | ENSG00000110660.10 | 9.638E-11 | 0 | 77513 | gtex_brain_putamen_basal |
| rs10431032 | 11 | 107721901 | SLC35F2 | ENSG00000110660.10 | 4.178E-11 | 0 | 77118 | gtex_brain_putamen_basal |
| RS4754264 | 11 | 107722540 | SLC35F2 | ENSG00000110660.10 | 7.789e-13 | 0 | 76479 | gtex_brain_putamen_basal |
| rs144667830 | 11 | 107723274 | SLC35F2 | ENSG00000110660.10 | 2.888e-10 | 0 | 75745 | gtex_brain_putamen_basal |
| RS36043913 | 11 | 107725168 | SLC35F2 | ENSG00000110660.10 | 6.593e-11 | 0 | 73851 | gtex_brain_putamen_basal |
| RS4754265 | 11 | 107725297 | SLC35F2 | ENSG00000110660.10 | 2.293E-12 | 0 | 73722 | gtex_brain_putamen_basal |
| rs7109214 | 11 | 107726716 | SLC35F2 | ENSG00000110660.10 | 1.456e-12 | 0 | 72303 | gtex_brain_putamen_basal |
| RS200993199 | 11 | 107726849 | SLC35F2 | ENSG00000110660.10 | 3.784e-12 | 0 | 72170 | gtex_brain_putamen_basal |
| RS59133662 | 11 | 107727631 | SLC35F2 | ENSG00000110660.10 | 1.472E-10 | 0 | 71388 | gtex_brain_putamen_basal |
| rs11607450 | 11 | 107727662 | SLC35F2 | ENSG00000110660.10 | 4.928e-12 | 0 | 71357 | gtex_brain_putamen_basal |
| rs11212410 | 11 | 107728008 | SLC35F2 | ENSG00000110660.10 | 1.109E-12 | 0 | 71011 | gtex_brain_putamen_basal |
| RS924859 | 11 | 107728430 | SLC35F2 | ENSG00000110660.10 | 1.056e-12 | 0 | 70589 | gtex_brain_putamen_basal |
| RS924860 | 11 | 107728662 | SLC35F2 | ENSG00000110660.10 | 1.039e-12 | 0 | 70357 | gtex_brain_putamen_basal |
| RS11380459 | 11 | 107729116 | SLC35F2 | ENSG00000110660.10 | 1.975e-11 | 0 | 69903 | gtex_brain_putamen_basal |
| RS11603959 | 11 | 107729126 | SLC35F2 | ENSG00000110660.10 | 2.276e-12 | 0 | 69893 | gtex_brain_putamen_basal |
| RS11603925 | 11 | 107729205 | SLC35F2 | ENSG00000110660.10 | 8.413E-13 | 0 | 69814 | gtex_brain_putamen_basal |
| RS3741065 | 11 | 107729561 | SLC35F2 | ENSG00000110660.10 | 9.563e-13 | 0 | 69458 | gtex_brain_putamen_basal |
| RS61906861 | 11 | 107730204 | SLC35F2 | ENSG00000110660.10 | 1.313e-11 | 0 | 68815 | gtex_brain_putamen_basal |
| RS4754267 | 11 | 107730904 | SLC35F2 | ENSG00000110660.10 | 4.953e-11 | 0 | 68115 | gtex_brain_putamen_basal |
| RS7104006 | 11 | 107732390 | SLC35F2 | ENSG00000110660.10 | 4.382e-11 | 0 | 66629 | gtex_brain_putamen_basal |
| RS7104117 | 11 | 107732391 | SLC35F2 | ENSG00000110660.10 | 4.382e-11 | 0 | 66628 | gtex_brain_putamen_basal |
| RS12417231 | 11 | 107733687 | SLC35F2 | ENSG00000110660.10 | 1.592E-10 | 0 | 65332 | gtex_brain_putamen_basal |
| RS59964095 | 11 | 107734961 | SLC35F2 | ENSG00000110660.10 | 3.683E-10 | 0 | 64058 | gtex_brain_putamen_basal |
| RS73005388 | 11 | 107734964 | SLC35F2 | ENSG00000110660.10 | 8.419e-9 | 0 | 64055 | gtex_brain_putamen_basal |
| rs56875439 | 11 | 107735081 | SLC35F2 | ENSG00000110660.10 | 1.29E-10 | 0 | 63938 | gtex_brain_putamen_basal |
| RS56139321 | 11 | 107735115 | SLC35F2 | ENSG00000110660.10 | 1.453E-10 | 0 | 63904 | gtex_brain_putamen_basal |
| RS55669117 | 11 | 107735150 | SLC35F2 | ENSG00000110660.10 | 1.453E-10 | 0 | 63869 | gtex_brain_putamen_basal |
| RS56218864 | 11 | 107735212 | SLC35F2 | ENSG00000110660.10 | 1.453E-10 | 0 | 63807 | gtex_brain_putamen_basal |
| rs11212411 | 11 | 107735502 | SLC35F2 | ENSG00000110660.10 | 1.483E-10 | 0 | 63517 | gtex_brain_putamen_basal |
| RS4754268 | 11 | 107736597 | SLC35F2 | ENSG00000110660.10 | 3.915e-11 | 0 | 62422 | gtex_brain_putamen_basal |
| RS4587695 | 11 | 107736863 | SLC35F2 | ENSG00000110660.10 | 1.891E-10 | 0 | 62156 | gtex_brain_putamen_basal |
| RS57705781 | 11 | 107737623 | SLC35F2 | ENSG00000110660.10 | 3.061E-10 | 0 | 61396 | gtex_brain_putamen_basal |
| RS61906905 | 11 | 107737762 | SLC35F2 | ENSG00000110660.10 | 3.86e-10 | 0 | 61257 | gtex_brain_putamen_basal |
| RS12417999 | 11 | 107737927 | SLC35F2 | ENSG00000110660.10 | 2.698E-10 | 0 | 61092 | gtex_brain_putamen_basal |
| rs12225825 | 11 | 107738546 | SLC35F2 | ENSG00000110660.10 | 1.551E-10 | 0 | 60473 | gtex_brain_putamen_basal |
| rs7111326 | 11 | 107739265 | SLC35F2 | ENSG00000110660.10 | 3.573E-9 | 0 | 59754 | gtex_brain_putamen_basal |
| rs7111327 | 11 | 107739269 | SLC35F2 | ENSG00000110660.10 | 3.568e-9 | 0 | 59750 | gtex_brain_putamen_basal |
| RS4754270 | 11 | 107740685 | SLC35F2 | ENSG00000110660.10 | 1.393E-9 | 0 | 58334 | gtex_brain_putamen_basal |
| RS73007259 | 11 | 107741216 | SLC35F2 | ENSG00000110660.10 | 1.395E-9 | 0 | 57803 | gtex_brain_putamen_basal |
| RS7946548 | 11 | 107742791 | SLC35F2 | ENSG00000110660.10 | 1.421E-9 | 0 | 56228 | gtex_brain_putamen_basal |
| rs11212414 | 11 | 107743155 | SLC35F2 | ENSG00000110660.10 | 2.606E-8 | 0 | 55864 | gtex_brain_putamen_basal |
| RS4466794 | 11 | 107743582 | SLC35F2 | ENSG00000110660.10 | 1.421E-9 | 0 | 55437 | gtex_brain_putamen_basal |
| rs11212416 | 11 | 107743594 | SLC35F2 | ENSG00000110660.10 | 1.421E-9 | 0 | 55425 | gtex_brain_putamen_basal |
| rs11212419 | 11 | 107744303 | SLC35F2 | ENSG00000110660.10 | 1.488E-9 | 0 | 54716 | gtex_brain_putamen_basal |
| rs4531430 | 11 | 107744769 | SLC35F2 | ENSG00000110660.10 | 1.543E-9 | 0 | 54250 | gtex_brain_putamen_basal |
| rs11212421 | 11 | 107745307 | SLC35F2 | ENSG00000110660.10 | 1.657E-9 | 0 | 53712 | gtex_brain_putamen_basal |
| rs11212422 | 11 | 107745475 | SLC35F2 | ENSG00000110660.10 | 1.199E-10 | 0 | 53544 | gtex_brain_putamen_basal |
| RS4469854 | 11 | 107745911 | SLC35F2 | ENSG00000110660.10 | 5.524e-10 | 0 | 53108 | gtex_brain_putamen_basal |
| RS112789137 | 11 | 107746313 | SLC35F2 | ENSG00000110660.10 | 3.943E-8 | 0 | 52706 | gtex_brain_putamen_basal |
| RS7481935 | 11 | 107746344 | SLC35F2 | ENSG00000110660.10 | 6.469E-10 | 0 | 52675 | gtex_brain_putamen_basal |
| RS7941501 | 11 | 107747025 | SLC35F2 | ENSG00000110660.10 | 7.016e-10 | 0 | 51994 | gtex_brain_putamen_basal |
| rs11212434 | 11 | 107784165 | SLC35F2 | ENSG00000110660.10 | 2.035E-6 | 0 | 14854 | gtex_brain_putamen_basal |
第二节。转录组注释
一般基因表达（GTEX）
Devlopment期间的基因表达（BrainCloud）
Footnote:
总共绘制了269个时间点，n = 38个胎儿样品（x = 1：38）。每个三角形代表一个时间点。
时间变化的基因表达（brainspan）
Footnote:
SC：亚皮质区域；SM：感觉运动区域；FC：额叶皮层；和TP：颞顶皮层
ST1：胎儿（13-26个概念后周），ST2：婴儿早期至童年（4个月至11年）和ST3：青春期至成年期（13-23年）
所示的栏表示表达分布的较低25％和上层25％。
No co-expressed genes in brain regions
第三节。基因本体论注释
| 分子功能 | 去学期 | 证据 | 神经关键字 | PubMed ID |
|---|---|---|---|---|
| 去：0003674 | Molecular_Function | nd | - | |
| 生物过程 | 去学期 | 证据 | 神经关键字 | PubMed ID |
| 去：0008150 | biological_process | nd | - | |
| GO:0006810 | 运输 | IEA | - | |
| 细胞分量 | 去学期 | 证据 | 神经关键字 | PubMed ID |
| 去：0005575 | cellular_component | nd | - | |
| 去：0016020 | membrane | IEA | - | |
| GO：0016021 | 膜不可或缺 | IEA | - |
Section V. Pathway annotation
第六节。microRNA注释
| mirna家族 | 目标位置 | miRNA ID | mirna seq | ||
|---|---|---|---|---|---|
| UTR开始 | UTR结束 | 匹配方法 | |||
| miR-496 | 1541 | 1547 | 1a | HSA-MIR-496 | Auuacauggccaaucuc |