基因页：CSGALNACT1
概括？
| 基因 | 55790 |
| Symbol | CSGALNACT1 |
| Synonyms | csgalnact-1 | chgn | beta4galnact |
| Description | 硫酸软骨素N-乙酰乳糖苷转移酶1 |
| Reference | MIM:616615|HGNC:HGNC:24290|Ensembl:ENSG00000147408|HPRD:13114|Vega：Otthumg00000130827 |
| Gene type | 蛋白质编码 |
| 地图位置 | 8p21.3 |
| Pascal p-value | 0.115 |
| Sherlock P值 | 0.961 |
| 胎儿β | -1.12 |
| 主持人 | 前扣带回皮层BA24 尾状基底神经节 Cortex 额叶皮质BA9 Hippocampus 下丘脑 Nucleus accumbens basal ganglia Putamen basal ganglia 元 |
数据源中的基因
| 基因集名称 | Method of gene set | Description | 信息 |
|---|---|---|---|
| CV：GWASDB | 全基因组关联研究 | GWASdb records for schizophrenia | |
| CV:PGCnp | 全基因组协会研究 | GWAS | |
| go_annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 1 |
第一节遗传学和表观遗传学注释
EQTL注释
EQTL注释| SNP ID | Chromosome | Position | 主持人 | Gene Entrez ID | PVALUE | QVALUE | TSS距离 | EQTL类型 |
|---|---|---|---|---|---|---|---|---|
| rs4256608 | 8 | 19267560 | CSGALNACT1 | ENSG00000147408.10 | 1.415E-7 | 0 | 347980 | gtex_brain_ba24 |
| RS17407039 | 8 | 19268056 | CSGALNACT1 | ENSG00000147408.10 | 1.124E-7 | 0 | 347484 | gtex_brain_ba24 |
| RS11785649 | 8 | 19268233 | CSGALNACT1 | ENSG00000147408.10 | 1.066E-7 | 0 | 347307 | gtex_brain_ba24 |
| rs11782540 | 8 | 19268251 | CSGALNACT1 | ENSG00000147408.10 | 1.062E-7 | 0 | 347289 | gtex_brain_ba24 |
| RS7821446 | 8 | 19268822 | CSGALNACT1 | ENSG00000147408.10 | 3.138e-8 | 0 | 346718 | gtex_brain_ba24 |
| RS17407149 | 8 | 19274848 | CSGALNACT1 | ENSG00000147408.10 | 1.365E-7 | 0 | 340692 | gtex_brain_ba24 |
| RS6991231 | 8 | 19276556 | CSGALNACT1 | ENSG00000147408.10 | 2.265E-8 | 0 | 338984 | gtex_brain_ba24 |
| rs11204039 | 8 | 19280442 | CSGALNACT1 | ENSG00000147408.10 | 4.726E-7 | 0 | 335098 | gtex_brain_ba24 |
| rs12678336 | 8 | 19280552 | CSGALNACT1 | ENSG00000147408.10 | 4.534E-7 | 0 | 334988 | gtex_brain_ba24 |
| RS11787230 | 8 | 19280982 | CSGALNACT1 | ENSG00000147408.10 | 4.073E-7 | 0 | 334558 | gtex_brain_ba24 |
| RS11784873 | 8 | 19281113 | CSGALNACT1 | ENSG00000147408.10 | 4.071E-7 | 0 | 334427 | gtex_brain_ba24 |
| rs7004435 | 8 | 19282732 | CSGALNACT1 | ENSG00000147408.10 | 4.056E-7 | 0 | 332808 | gtex_brain_ba24 |
| RS4546679 | 8 | 19283335 | CSGALNACT1 | ENSG00000147408.10 | 4.051E-7 | 0 | 332205 | gtex_brain_ba24 |
| rs4333618 | 8 | 19283442 | CSGALNACT1 | ENSG00000147408.10 | 4.05E-7 | 0 | 332098 | gtex_brain_ba24 |
| RS4549789 | 8 | 19284015 | CSGALNACT1 | ENSG00000147408.10 | 4.043E-7 | 0 | 331525 | gtex_brain_ba24 |
| rs4554480 | 8 | 19284072 | CSGALNACT1 | ENSG00000147408.10 | 4.036E-7 | 0 | 331468 | gtex_brain_ba24 |
| rs4433156 | 8 | 19284247 | CSGALNACT1 | ENSG00000147408.10 | 1.868E-7 | 0 | 331293 | gtex_brain_ba24 |
| RS4481612 | 8 | 19285336 | CSGALNACT1 | ENSG00000147408.10 | 1.914E-9 | 0 | 330204 | gtex_brain_ba24 |
| RS13258090 | 8 | 19285726 | CSGALNACT1 | ENSG00000147408.10 | 4.556E-7 | 0 | 329814 | gtex_brain_ba24 |
| RS12543061 | 8 | 19286181 | CSGALNACT1 | ENSG00000147408.10 | 4.516E-7 | 0 | 329359 | gtex_brain_ba24 |
| rs10107416 | 8 | 19286253 | CSGALNACT1 | ENSG00000147408.10 | 1.649E-7 | 0 | 329287 | gtex_brain_ba24 |
| RS12542575 | 8 | 19286558 | CSGALNACT1 | ENSG00000147408.10 | 4.556E-7 | 0 | 328982 | gtex_brain_ba24 |
| rs6992893 | 8 | 19287504 | CSGALNACT1 | ENSG00000147408.10 | 4.556E-7 | 0 | 328036 | gtex_brain_ba24 |
| RS6997164 | 8 | 19287856 | CSGALNACT1 | ENSG00000147408.10 | 9.238e-9 | 0 | 327684 | gtex_brain_ba24 |
| RS6983973 | 8 | 19287867 | CSGALNACT1 | ENSG00000147408.10 | 4.556E-7 | 0 | 327673 | gtex_brain_ba24 |
| rs11204040 | 8 | 19288525 | CSGALNACT1 | ENSG00000147408.10 | 4.556E-7 | 0 | 327015 | gtex_brain_ba24 |
| RS13255677 | 8 | 19288985 | CSGALNACT1 | ENSG00000147408.10 | 1.789E-7 | 0 | 326555 | gtex_brain_ba24 |
| rs11991105 | 8 | 19290655 | CSGALNACT1 | ENSG00000147408.10 | 9.397E-7 | 0 | 324885 | gtex_brain_ba24 |
| rs11780343 | 8 | 19290963 | CSGALNACT1 | ENSG00000147408.10 | 4.483E-7 | 0 | 324577 | gtex_brain_ba24 |
| rs11204041 | 8 | 19291371 | CSGALNACT1 | ENSG00000147408.10 | 4.584E-7 | 0 | 324169 | gtex_brain_ba24 |
| RS7823194 | 8 | 19292228 | CSGALNACT1 | ENSG00000147408.10 | 4.589E-7 | 0 | 323012 | gtex_brain_ba24 |
| RS12675717 | 8 | 19293177 | CSGALNACT1 | ENSG00000147408.10 | 5.121E-7 | 0 | 322363 | gtex_brain_ba24 |
| rs4430112 | 8 | 19293365 | CSGALNACT1 | ENSG00000147408.10 | 4.556E-7 | 0 | 322175 | gtex_brain_ba24 |
| rs4431609 | 8 | 19293565 | CSGALNACT1 | ENSG00000147408.10 | 2.064e-8 | 0 | 321975 | gtex_brain_ba24 |
| RS4921642 | 8 | 19293906 | CSGALNACT1 | ENSG00000147408.10 | 4.556E-7 | 0 | 321634 | gtex_brain_ba24 |
| RS6984145 | 8 | 19294111 | CSGALNACT1 | ENSG00000147408.10 | 4.556E-7 | 0 | 321429 | gtex_brain_ba24 |
| RS7833166 | 8 | 19294634 | CSGALNACT1 | ENSG00000147408.10 | 4.523E-7 | 0 | 320906 | gtex_brain_ba24 |
| RS13278459 | 8 | 19297583 | CSGALNACT1 | ENSG00000147408.10 | 1.724E-7 | 0 | 317957 | gtex_brain_ba24 |
| RS80127747 | 8 | 19299061 | CSGALNACT1 | ENSG00000147408.10 | 1.565E-7 | 0 | 316479 | gtex_brain_ba24 |
| rs12674938 | 8 | 19300813 | CSGALNACT1 | ENSG00000147408.10 | 1.714E-7 | 0 | 314727 | gtex_brain_ba24 |
| rs4618712 | 8 | 19302621 | CSGALNACT1 | ENSG00000147408.10 | 2.225E-7 | 0 | 312919 | gtex_brain_ba24 |
| RS6981898 | 8 | 19305705 | CSGALNACT1 | ENSG00000147408.10 | 2.658E-7 | 0 | 309835 | gtex_brain_ba24 |
| RS56298301 | 8 | 19305937 | CSGALNACT1 | ENSG00000147408.10 | 9.19e-10 | 0 | 309603 | gtex_brain_ba24 |
| rs7818345 | 8 | 19306618 | CSGALNACT1 | ENSG00000147408.10 | 2.657E-7 | 0 | 308922 | gtex_brain_ba24 |
| RS7835461 | 8 | 19307051 | CSGALNACT1 | ENSG00000147408.10 | 2.657E-7 | 0 | 308489 | gtex_brain_ba24 |
| RS35029660 | 8 | 19308126 | CSGALNACT1 | ENSG00000147408.10 | 1.969E-7 | 0 | 307414 | gtex_brain_ba24 |
| rs7011602 | 8 | 19308915 | CSGALNACT1 | ENSG00000147408.10 | 1.327E-6 | 0 | 306625 | gtex_brain_ba24 |
| RS4392915 | 8 | 19308938 | CSGALNACT1 | ENSG00000147408.10 | 1.885E-7 | 0 | 306602 | gtex_brain_ba24 |
| RS4392916 | 8 | 19309355 | CSGALNACT1 | ENSG00000147408.10 | 1.868E-7 | 0 | 306185 | gtex_brain_ba24 |
| rs4379462 | 8 | 19311496 | CSGALNACT1 | ENSG00000147408.10 | 2.945E-7 | 0 | 304044 | gtex_brain_ba24 |
| RS4409408 | 8 | 19311538 | CSGALNACT1 | ENSG00000147408.10 | 1.068E-7 | 0 | 304002 | gtex_brain_ba24 |
| RS10888163 | 8 | 19315034 | CSGALNACT1 | ENSG00000147408.10 | 4.208E-10 | 0 | 300506 | gtex_brain_ba24 |
| rs12155539 | 8 | 19316086 | CSGALNACT1 | ENSG00000147408.10 | 6.932E-7 | 0 | 299454 | gtex_brain_ba24 |
| RS58551730 | 8 | 19316627 | CSGALNACT1 | ENSG00000147408.10 | 6.932E-7 | 0 | 298913 | gtex_brain_ba24 |
| rs4625053 | 8 | 19317270 | CSGALNACT1 | ENSG00000147408.10 | 5.278E-9 | 0 | 298270 | gtex_brain_ba24 |
| RS4922034 | 8 | 19326307 | CSGALNACT1 | ENSG00000147408.10 | 6.306E-7 | 0 | 289233 | gtex_brain_ba24 |
| rs4244451 | 8 | 19326409 | CSGALNACT1 | ENSG00000147408.10 | 6.306E-7 | 0 | 289131 | gtex_brain_ba24 |
| RS4921647 | 8 | 19326443 | CSGALNACT1 | ENSG00000147408.10 | 6.38e-7 | 0 | 289097 | gtex_brain_ba24 |
| rs4244452 | 8 | 19326521 | CSGALNACT1 | ENSG00000147408.10 | 6.38e-7 | 0 | 289019 | gtex_brain_ba24 |
| rs4455847 | 8 | 19326546 | CSGALNACT1 | ENSG00000147408.10 | 7.892E-7 | 0 | 288994 | gtex_brain_ba24 |
| RS5013219 | 8 | 19326548 | CSGALNACT1 | ENSG00000147408.10 | 6.38e-7 | 0 | 288992 | gtex_brain_ba24 |
| rs4524812 | 8 | 19326553 | CSGALNACT1 | ENSG00000147408.10 | 6.38e-7 | 0 | 288987 | gtex_brain_ba24 |
| rs6586838 | 8 | 19332689 | CSGALNACT1 | ENSG00000147408.10 | 7.295E-7 | 0 | 282851 | gtex_brain_ba24 |
| RS4921648 | 8 | 19333013 | CSGALNACT1 | ENSG00000147408.10 | 6.062E-7 | 0 | 282527 | gtex_brain_ba24 |
| RS4921649 | 8 | 19333173 | CSGALNACT1 | ENSG00000147408.10 | 5.593E-7 | 0 | 282367 | gtex_brain_ba24 |
| rs4540423 | 8 | 19334006 | CSGALNACT1 | ENSG00000147408.10 | 6.092E-7 | 0 | 281534 | gtex_brain_ba24 |
| rs4311666 | 8 | 19334085 | CSGALNACT1 | ENSG00000147408.10 | 5.587E-7 | 0 | 281455 | gtex_brain_ba24 |
| rs11204045 | 8 | 19335101 | CSGALNACT1 | ENSG00000147408.10 | 5.593E-7 | 0 | 280439 | gtex_brain_ba24 |
| rs4413788 | 8 | 19336762 | CSGALNACT1 | ENSG00000147408.10 | 1.775E-7 | 0 | 278778 | gtex_brain_ba24 |
| rs4442163 | 8 | 19337021 | CSGALNACT1 | ENSG00000147408.10 | 5.593E-7 | 0 | 278519 | gtex_brain_ba24 |
| rs7460541 | 8 | 19337028 | CSGALNACT1 | ENSG00000147408.10 | 5.593E-7 | 0 | 278512 | gtex_brain_ba24 |
| rs398086404 | 8 | 19338703 | CSGALNACT1 | ENSG00000147408.10 | 5.531E-7 | 0 | 276837 | gtex_brain_ba24 |
| RS4921651 | 8 | 19339085 | CSGALNACT1 | ENSG00000147408.10 | 5.593E-7 | 0 | 276455 | gtex_brain_ba24 |
| RS4922037 | 8 | 19339703 | CSGALNACT1 | ENSG00000147408.10 | 5.585E-7 | 0 | 275837 | gtex_brain_ba24 |
| rs13265751 | 8 | 19340019 | CSGALNACT1 | ENSG00000147408.10 | 5.593E-7 | 0 | 275521 | gtex_brain_ba24 |
| rs13267265 | 8 | 19340718 | CSGALNACT1 | ENSG00000147408.10 | 5.593E-7 | 0 | 274822 | gtex_brain_ba24 |
| rs4256608 | 8 | 19267560 | CSGALNACT1 | ENSG00000147408.10 | 5.169E-9 | 0 | 347980 | gtex_brain_putamen_basal |
| RS17407039 | 8 | 19268056 | CSGALNACT1 | ENSG00000147408.10 | 7.595E-10 | 0 | 347484 | gtex_brain_putamen_basal |
| RS11785649 | 8 | 19268233 | CSGALNACT1 | ENSG00000147408.10 | 7.615E-10 | 0 | 347307 | gtex_brain_putamen_basal |
| rs11782540 | 8 | 19268251 | CSGALNACT1 | ENSG00000147408.10 | 1.068E-9 | 0 | 347289 | gtex_brain_putamen_basal |
| RS7821446 | 8 | 19268822 | CSGALNACT1 | ENSG00000147408.10 | 7.615E-10 | 0 | 346718 | gtex_brain_putamen_basal |
| RS4412390 | 8 | 19270143 | CSGALNACT1 | ENSG00000147408.10 | 1.945E-7 | 0 | 345397 | gtex_brain_putamen_basal |
| rs12679671 | 8 | 19270831 | CSGALNACT1 | ENSG00000147408.10 | 2.047E-7 | 0 | 344709 | gtex_brain_putamen_basal |
| RS12679712 | 8 | 19271032 | CSGALNACT1 | ENSG00000147408.10 | 1.945E-7 | 0 | 344508 | gtex_brain_putamen_basal |
| rs11780388 | 8 | 19271554 | CSGALNACT1 | ENSG00000147408.10 | 3.84e-7 | 0 | 343986 | gtex_brain_putamen_basal |
| RS7006702 | 8 | 19272533 | CSGALNACT1 | ENSG00000147408.10 | 1.83E-7 | 0 | 343007 | gtex_brain_putamen_basal |
| RS4921638 | 8 | 19274793 | CSGALNACT1 | ENSG00000147408.10 | 1.948E-7 | 0 | 340747 | gtex_brain_putamen_basal |
| RS17407149 | 8 | 19274848 | CSGALNACT1 | ENSG00000147408.10 | 4.876E-9 | 0 | 340692 | gtex_brain_putamen_basal |
| rs13255946 | 8 | 19275354 | CSGALNACT1 | ENSG00000147408.10 | 7.217E-7 | 0 | 340186 | gtex_brain_putamen_basal |
| RS4391454 | 8 | 19275653 | CSGALNACT1 | ENSG00000147408.10 | 2.441E-7 | 0 | 339887 | gtex_brain_putamen_basal |
| rs4633071 | 8 | 19275852 | CSGALNACT1 | ENSG00000147408.10 | 1.948E-7 | 0 | 339688 | gtex_brain_putamen_basal |
| RS6991212 | 8 | 19276522 | CSGALNACT1 | ENSG00000147408.10 | 4.989E-7 | 0 | 339018 | gtex_brain_putamen_basal |
| RS6991231 | 8 | 19276556 | CSGALNACT1 | ENSG00000147408.10 | 3.689E-9 | 0 | 338984 | gtex_brain_putamen_basal |
| rs6990217 | 8 | 19276661 | CSGALNACT1 | ENSG00000147408.10 | 4.989E-7 | 0 | 338879 | gtex_brain_putamen_basal |
| RS7015440 | 8 | 19276991 | CSGALNACT1 | ENSG00000147408.10 | 4.989E-7 | 0 | 338549 | gtex_brain_putamen_basal |
| rs17479099 | 8 | 19277144 | CSGALNACT1 | ENSG00000147408.10 | 5.546E-7 | 0 | 338396 | gtex_brain_putamen_basal |
| RS11786847 | 8 | 19277200 | CSGALNACT1 | ENSG00000147408.10 | 5.546E-7 | 0 | 338340 | gtex_brain_putamen_basal |
| rs7016259 | 8 | 19277530 | CSGALNACT1 | ENSG00000147408.10 | 5.546E-7 | 0 | 338010 | gtex_brain_putamen_basal |
| RS7016592 | 8 | 19277735 | CSGALNACT1 | ENSG00000147408.10 | 5.546E-7 | 0 | 337805 | gtex_brain_putamen_basal |
| RS6999786 | 8 | 19277817 | CSGALNACT1 | ENSG00000147408.10 | 1.945E-7 | 0 | 337723 | gtex_brain_putamen_basal |
| rs11204039 | 8 | 19280442 | CSGALNACT1 | ENSG00000147408.10 | 1.844E-8 | 0 | 335098 | gtex_brain_putamen_basal |
| rs12678336 | 8 | 19280552 | CSGALNACT1 | ENSG00000147408.10 | 1.559 e-8 | 0 | 334988 | gtex_brain_putamen_basal |
| RS11787230 | 8 | 19280982 | CSGALNACT1 | ENSG00000147408.10 | 8.403E-9 | 0 | 334558 | gtex_brain_putamen_basal |
| RS11784873 | 8 | 19281113 | CSGALNACT1 | ENSG00000147408.10 | 8.366E-9 | 0 | 334427 | gtex_brain_putamen_basal |
| rs7004435 | 8 | 19282732 | CSGALNACT1 | ENSG00000147408.10 | 5.215E-8 | 0 | 332808 | gtex_brain_putamen_basal |
| RS4546679 | 8 | 19283335 | CSGALNACT1 | ENSG00000147408.10 | 7.964e-9 | 0 | 332205 | gtex_brain_putamen_basal |
| rs4333618 | 8 | 19283442 | CSGALNACT1 | ENSG00000147408.10 | 7.924E-9 | 0 | 332098 | gtex_brain_putamen_basal |
| RS4549789 | 8 | 19284015 | CSGALNACT1 | ENSG00000147408.10 | 7.652E-9 | 0 | 331525 | gtex_brain_putamen_basal |
| rs4554480 | 8 | 19284072 | CSGALNACT1 | ENSG00000147408.10 | 1.2E-8 | 0 | 331468 | gtex_brain_putamen_basal |
| rs4433156 | 8 | 19284247 | CSGALNACT1 | ENSG00000147408.10 | 2.699E-9 | 0 | 331293 | gtex_brain_putamen_basal |
| RS4481612 | 8 | 19285336 | CSGALNACT1 | ENSG00000147408.10 | 6.027E-10 | 0 | 330204 | gtex_brain_putamen_basal |
| RS13258090 | 8 | 19285726 | CSGALNACT1 | ENSG00000147408.10 | 2.359E-9 | 0 | 329814 | gtex_brain_putamen_basal |
| RS12543061 | 8 | 19286181 | CSGALNACT1 | ENSG00000147408.10 | 9.88e-10 | 0 | 329359 | gtex_brain_putamen_basal |
| rs10107416 | 8 | 19286253 | CSGALNACT1 | ENSG00000147408.10 | 4.757E-10 | 0 | 329287 | gtex_brain_putamen_basal |
| RS201258166 | 8 | 19286333 | CSGALNACT1 | ENSG00000147408.10 | 8.012e-7 | 0 | 329207 | gtex_brain_putamen_basal |
| RS12542575 | 8 | 19286558 | CSGALNACT1 | ENSG00000147408.10 | 9.637E-10 | 0 | 328982 | gtex_brain_putamen_basal |
| rs6992893 | 8 | 19287504 | CSGALNACT1 | ENSG00000147408.10 | 9.637E-10 | 0 | 328036 | gtex_brain_putamen_basal |
| RS6997164 | 8 | 19287856 | CSGALNACT1 | ENSG00000147408.10 | 3.097E-10 | 0 | 327684 | gtex_brain_putamen_basal |
| RS6983973 | 8 | 19287867 | CSGALNACT1 | ENSG00000147408.10 | 9.637E-10 | 0 | 327673 | gtex_brain_putamen_basal |
| rs11204040 | 8 | 19288525 | CSGALNACT1 | ENSG00000147408.10 | 3.979E-9 | 0 | 327015 | gtex_brain_putamen_basal |
| RS13255677 | 8 | 19288985 | CSGALNACT1 | ENSG00000147408.10 | 3.158E-9 | 0 | 326555 | gtex_brain_putamen_basal |
| rs11991105 | 8 | 19290655 | CSGALNACT1 | ENSG00000147408.10 | 1.46E-8 | 0 | 324885 | gtex_brain_putamen_basal |
| rs11780343 | 8 | 19290963 | CSGALNACT1 | ENSG00000147408.10 | 1.01E-9 | 0 | 324577 | gtex_brain_putamen_basal |
| rs11204041 | 8 | 19291371 | CSGALNACT1 | ENSG00000147408.10 | 2.322E-8 | 0 | 324169 | gtex_brain_putamen_basal |
| RS7844175 | 8 | 19292244 | CSGALNACT1 | ENSG00000147408.10 | 4.689E-7 | 0 | 323296 | gtex_brain_putamen_basal |
| RS7822046 | 8 | 19292471 | CSGALNACT1 | ENSG00000147408.10 | 3.18E-7 | 0 | 323069 | gtex_brain_putamen_basal |
| RS7823194 | 8 | 19292228 | CSGALNACT1 | ENSG00000147408.10 | 9.653E-10 | 0 | 323012 | gtex_brain_putamen_basal |
| RS12675717 | 8 | 19293177 | CSGALNACT1 | ENSG00000147408.10 | 9.637E-10 | 0 | 322363 | gtex_brain_putamen_basal |
| rs4430112 | 8 | 19293365 | CSGALNACT1 | ENSG00000147408.10 | 9.637E-10 | 0 | 322175 | gtex_brain_putamen_basal |
| rs4431609 | 8 | 19293565 | CSGALNACT1 | ENSG00000147408.10 | 5.149E-10 | 0 | 321975 | gtex_brain_putamen_basal |
| RS4921642 | 8 | 19293906 | CSGALNACT1 | ENSG00000147408.10 | 9.382E-10 | 0 | 321634 | gtex_brain_putamen_basal |
| RS6984145 | 8 | 19294111 | CSGALNACT1 | ENSG00000147408.10 | 9.637E-10 | 0 | 321429 | gtex_brain_putamen_basal |
| RS7833166 | 8 | 19294634 | CSGALNACT1 | ENSG00000147408.10 | 8.626E-10 | 0 | 320906 | gtex_brain_putamen_basal |
| RS7012529 | 8 | 19296280 | CSGALNACT1 | ENSG00000147408.10 | 6.386E-7 | 0 | 319260 | gtex_brain_putamen_basal |
| RS13278459 | 8 | 19297583 | CSGALNACT1 | ENSG00000147408.10 | 4.435E-10 | 0 | 317957 | gtex_brain_putamen_basal |
| RS80127747 | 8 | 19299061 | CSGALNACT1 | ENSG00000147408.10 | 8.627E-10 | 0 | 316479 | gtex_brain_putamen_basal |
| RS4921644 | 8 | 19299481 | CSGALNACT1 | ENSG00000147408.10 | 1.147E-7 | 0 | 316059 | gtex_brain_putamen_basal |
| rs12674938 | 8 | 19300813 | CSGALNACT1 | ENSG00000147408.10 | 2.109E-9 | 0 | 314727 | gtex_brain_putamen_basal |
| rs4618712 | 8 | 19302621 | CSGALNACT1 | ENSG00000147408.10 | 7.609E-9 | 0 | 312919 | gtex_brain_putamen_basal |
| rs4922028 | 8 | 19303771 | CSGALNACT1 | ENSG00000147408.10 | 1.148E-6 | 0 | 311769 | gtex_brain_putamen_basal |
| rs4922029 | 8 | 19304533 | CSGALNACT1 | ENSG00000147408.10 | 1.313E-6 | 0 | 311007 | gtex_brain_putamen_basal |
| RS6981898 | 8 | 19305705 | CSGALNACT1 | ENSG00000147408.10 | 1.138E-8 | 0 | 309835 | gtex_brain_putamen_basal |
| RS56298301 | 8 | 19305937 | CSGALNACT1 | ENSG00000147408.10 | 7.141E-11 | 0 | 309603 | gtex_brain_putamen_basal |
| rs6586833 | 8 | 19306262 | CSGALNACT1 | ENSG00000147408.10 | 1.03E-6 | 0 | 309278 | gtex_brain_putamen_basal |
| rs7818345 | 8 | 19306618 | CSGALNACT1 | ENSG00000147408.10 | 1.138E-8 | 0 | 308922 | gtex_brain_putamen_basal |
| RS7835461 | 8 | 19307051 | CSGALNACT1 | ENSG00000147408.10 | 1.684E-7 | 0 | 308489 | gtex_brain_putamen_basal |
| RS57858518 | 8 | 19307290 | CSGALNACT1 | ENSG00000147408.10 | 6.501E-7 | 0 | 308250 | gtex_brain_putamen_basal |
| RS35029660 | 8 | 19308126 | CSGALNACT1 | ENSG00000147408.10 | 4.398E-9 | 0 | 307414 | gtex_brain_putamen_basal |
| rs7011602 | 8 | 19308915 | CSGALNACT1 | ENSG00000147408.10 | 6.275E-8 | 0 | 306625 | gtex_brain_putamen_basal |
| RS4392915 | 8 | 19308938 | CSGALNACT1 | ENSG00000147408.10 | 4.505 e-9 | 0 | 306602 | gtex_brain_putamen_basal |
| RS4392916 | 8 | 19309355 | CSGALNACT1 | ENSG00000147408.10 | 4.403E-9 | 0 | 306185 | gtex_brain_putamen_basal |
| rs4379462 | 8 | 19311496 | CSGALNACT1 | ENSG00000147408.10 | 2.694E-9 | 0 | 304044 | gtex_brain_putamen_basal |
| RS4409408 | 8 | 19311538 | CSGALNACT1 | ENSG00000147408.10 | 1.385E-9 | 0 | 304002 | gtex_brain_putamen_basal |
| RS4486225 | 8 | 19313404 | CSGALNACT1 | ENSG00000147408.10 | 2.036E-7 | 0 | 302136 | gtex_brain_putamen_basal |
| RS13261824 | 8 | 19313912 | CSGALNACT1 | ENSG00000147408.10 | 1.467E-7 | 0 | 301628 | gtex_brain_putamen_basal |
| RS10888163 | 8 | 19315034 | CSGALNACT1 | ENSG00000147408.10 | 1.18e-12 | 0 | 300506 | gtex_brain_putamen_basal |
| rs12155539 | 8 | 19316086 | CSGALNACT1 | ENSG00000147408.10 | 6.77E-10 | 0 | 299454 | gtex_brain_putamen_basal |
| RS58551730 | 8 | 19316627 | CSGALNACT1 | ENSG00000147408.10 | 6.77E-10 | 0 | 298913 | gtex_brain_putamen_basal |
| rs4625053 | 8 | 19317270 | CSGALNACT1 | ENSG00000147408.10 | 1.75E-12 | 0 | 298270 | gtex_brain_putamen_basal |
| RS62496184 | 8 | 19319423 | CSGALNACT1 | ENSG00000147408.10 | 4.817E-7 | 0 | 296117 | gtex_brain_putamen_basal |
| RS35736969 | 8 | 19319620 | CSGALNACT1 | ENSG00000147408.10 | 4.958E-7 | 0 | 295920 | gtex_brain_putamen_basal |
| rs34221121 | 8 | 19319625 | CSGALNACT1 | ENSG00000147408.10 | 2.565E-9 | 0 | 295915 | gtex_brain_putamen_basal |
| RS12680768 | 8 | 19320196 | CSGALNACT1 | ENSG00000147408.10 | 2.767E-9 | 0 | 295344 | gtex_brain_putamen_basal |
| rs201094651 | 8 | 19320665 | CSGALNACT1 | ENSG00000147408.10 | 6.349E-7 | 0 | 294875 | gtex_brain_putamen_basal |
| rs61345831 | 8 | 19320666 | CSGALNACT1 | ENSG00000147408.10 | 5.658E-7 | 0 | 294874 | gtex_brain_putamen_basal |
| RS4427190 | 8 | 19321385 | CSGALNACT1 | ENSG00000147408.10 | 6.298E-7 | 0 | 294155 | gtex_brain_putamen_basal |
| RS4922031 | 8 | 19323062 | CSGALNACT1 | ENSG00000147408.10 | 3.604E-7 | 0 | 292478 | gtex_brain_putamen_basal |
| RS13267801 | 8 | 19326834 | CSGALNACT1 | ENSG00000147408.10 | 2.458e-7 | 0 | 288706 | gtex_brain_putamen_basal |
| rs13275706 | 8 | 19327151 | CSGALNACT1 | ENSG00000147408.10 | 2.452E-7 | 0 | 288389 | gtex_brain_putamen_basal |
| rs11786904 | 8 | 19327267 | CSGALNACT1 | ENSG00000147408.10 | 1.315E-7 | 0 | 288273 | gtex_brain_putamen_basal |
| RS13250181 | 8 | 19328766 | CSGALNACT1 | ENSG00000147408.10 | 1.324E-7 | 0 | 286774 | gtex_brain_putamen_basal |
| rs13261732 | 8 | 19330215 | CSGALNACT1 | ENSG00000147408.10 | 1.324E-7 | 0 | 285325 | gtex_brain_putamen_basal |
| rs12682196 | 8 | 19332963 | CSGALNACT1 | ENSG00000147408.10 | 1.223E-7 | 0 | 282577 | gtex_brain_putamen_basal |
| rs200774223 | 8 | 19335648 | CSGALNACT1 | ENSG00000147408.10 | 1.069E-7 | 0 | 279892 | gtex_brain_putamen_basal |
第二节。转录组注释
一般基因表达（GTEX）
Gene expression during devlopment (BrainCloud)
Footnote:
总共绘制了269个时间点，n = 38个胎儿样品（x = 1：38）。每个三角形代表一个时间点。
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC：亚皮质区域；SM：感觉运动区域；FC：额叶皮层；和TP：颞顶皮层
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
大脑区域没有共表达基因
第三节。基因本体论注释
| 分子功能 | 去学期 | 证据 | 神经关键字 | PubMed ID |
|---|---|---|---|---|
| GO:0008955 | peptidoglycan glycosyltransferase activity | 艾达 | 11514575 | |
| GO:0016740 | 转移酶活性 | IEA | - | |
| GO:0015020 | 葡萄糖醛酸转移酶活性 | 艾达 | 11514575 | |
| GO：0046872 | metal ion binding | NAS | 12163485 | |
| GO:0047237 | glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity | 艾达 | 12163485 | |
| GO:0047238 | 葡萄糖醛酸-N-乙酰乳糖酰二氨基氨基氨基氨基氨基氨基氨基糖4-β-N-乙酰乳糖酰二氨基转移酶活性 | 艾达 | 12163485 | |
| 生物过程 | 去学期 | 证据 | 神经关键字 | PubMed ID |
| GO:0007399 | nervous system development | NAS | neurite (GO term level: 5) | 11514575 |
| GO:0008283 | cell proliferation | NAS | 11514575 | |
| 去：0009653 | anatomical structure morphogenesis | NAS | 11514575 | |
| GO:0008037 | 细胞识别 | NAS | 11514575 | |
| GO:0015014 | heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process | NAS | 11514575 | |
| GO:0030210 | 肝素生物合成过程 | NAS | 11514575 | |
| GO:0030206 | chondroitin sulfate biosynthetic process | 艾达 | 11514575|12163485 | |
| GO：0019276 | UDP-N-乙酰乳糖胺代谢过程 | 艾达 | 11514575 | |
| GO:0030198 | 细胞外基质组织 | NAS | 11514575 | |
| GO:0050651 | 皮肤硫酸盐蛋白聚糖生物合成过程 | ISS | 11788602 | |
| GO:0050653 | chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process | 艾达 | 12163485 | |
| GO:0046398 | UDP葡萄糖酸葡萄糖酸酯代谢过程 | 艾达 | 11514575 | |
| Cellular component | 去学期 | 证据 | 神经关键字 | PubMed ID |
| 去：0005794 | Golgi apparatus | IEA | - | |
| GO:0005622 | 细胞内 | 我知道了 | 12163485 | |
| 去：0005625 | soluble fraction | 艾达 | 11514575 | |
| 去：0016020 | 膜 | IEA | - | |
| GO：0016021 | integral to membrane | IEA | - | |
| GO:0030173 | integral to Golgi membrane | NAS | 11514575 |
V.途径注释
| Pathway name | 路径大小 | # SZGR 2.0 genes in pathway | 信息 |
|---|---|---|---|
| KEGG糖胺聚糖生物合成软骨素硫酸盐 | 22 | 16 | 该途径中的所有SZGR 2.0基因 |
| REACTOME CHONDROITIN SULFATE BIOSYNTHESIS | 21 | 15 | 该途径中的所有SZGR 2.0基因 |
| 反应组软骨素硫酸盐皮肤硫酸盐代谢 | 49 | 33 | 该途径中的所有SZGR 2.0基因 |
| Reactome糖胺聚糖代谢 | 111 | 69 | 该途径中的所有SZGR 2.0基因 |
| REACTOME METABOLISM OF CARBOHYDRATES | 247 | 154 | 该途径中的所有SZGR 2.0基因 |
| ONKEN UVEAL MELANOMA DN | 526 | 357 | 该途径中的所有SZGR 2.0基因 |
| HOOI ST7靶向DN | 123 | 78 | 该途径中的所有SZGR 2.0基因 |
| Corre多发性骨髓瘤 | 74 | 45 | 该途径中的所有SZGR 2.0基因 |
| Casorelli apl Secondary vs de从头上升 | 39 | 25 | 该途径中的所有SZGR 2.0基因 |
| LIU TARGETS OF VMYB VS CMYB DN | 43 | 30 | 该途径中的所有SZGR 2.0基因 |
| 埃尔维奇缺氧 | 171 | 112 | 该途径中的所有SZGR 2.0基因 |
| DMOG的Elvidge缺氧 | 130 | 85 | 该途径中的所有SZGR 2.0基因 |
| RODRIGUES THYROID CARCINOMA ANAPLASTIC DN | 537 | 339 | 该途径中的所有SZGR 2.0基因 |
| hahtola sezary综合征 | 98 | 58 | 该途径中的所有SZGR 2.0基因 |
| GAUSSMANN MLL AF4 FUSION TARGETS A UP | 191 | 128 | 该途径中的所有SZGR 2.0基因 |
| FARMER BREAST CANCER APOCRINE VS LUMINAL | 326 | 213 | 该途径中的所有SZGR 2.0基因 |
| NUYTTEN EZH2 TARGETS DN | 1024 | 594 | 该途径中的所有SZGR 2.0基因 |
| BENPORATH自行车基因S | 648 | 385 | 该途径中的所有SZGR 2.0基因 |
| Cervera SDHB目标2 | 114 | 76 | 该途径中的所有SZGR 2.0基因 |
| HADDAD B淋巴细胞祖细胞 | 293 | 193 | 该途径中的所有SZGR 2.0基因 |
| ALCALAY AML BY NPM1 LOCALIZATION DN | 184 | 132 | 该途径中的所有SZGR 2.0基因 |
| VERHAAK AML WITH NPM1 MUTATED DN | 246 | 180 | 该途径中的所有SZGR 2.0基因 |
| CUI TCF21 TARGETS 2 DN | 830 | 547 | 该途径中的所有SZGR 2.0基因 |
| 华莱士前列腺癌竞赛DN | 88 | 42 | 该途径中的所有SZGR 2.0基因 |
| riggi ewing肉瘤祖先DN | 191 | 123 | 该途径中的所有SZGR 2.0基因 |
| SMID乳腺癌腔B DN | 564 | 326 | 该途径中的所有SZGR 2.0基因 |
| SMID BREAST CANCER NORMAL LIKE UP | 476 | 285 | 该途径中的所有SZGR 2.0基因 |
| BREDEMEYER RAG SIGNALING VIA ATM NOT VIA NFKB UP | 49 | 32 | 该途径中的所有SZGR 2.0基因 |
| Ruiz TNC目标 | 153 | 107 | 该途径中的所有SZGR 2.0基因 |
| woo肝癌复发 | 105 | 75 | 该途径中的所有SZGR 2.0基因 |
| 惠特菲尔德细胞周期g2 m | 216 | 124 | 该途径中的所有SZGR 2.0基因 |
| figueroa aml甲基化簇2 DN | 9 | 8 | 该途径中的所有SZGR 2.0基因 |
| figueroa aml甲基化簇4 dn | 15 | 9 | 该途径中的所有SZGR 2.0基因 |
| figueroa aml甲基化簇6 dn | 38 | 19 | 该途径中的所有SZGR 2.0基因 |
| 通过p38完成的phong TNF响应 | 227 | 151 | 该途径中的所有SZGR 2.0基因 |
| DURAND STROMA S UP | 297 | 194 | 该途径中的所有SZGR 2.0基因 |
Section VI. microRNA annotation
| miRNA family | Target position | miRNA ID | mirna seq | ||
|---|---|---|---|---|---|
| UTR开始 | UTR结束 | 匹配方法 | |||
| mir-299-5p | 1062 | 1068 | 1A | HSA-MIR-299-5P | UGGUUUACCGUCCCACAUACAU |
| mir-9 | 1065 | 1071 | m8 | HSA-MIR-9SZ | ucuuuguuaucuagcuguauga |