Gene Page:TRIM39

Summary?
GeneID 56658
Symbol TRIM39
Synonyms RNF23|TFP|TRIM39B
Description tripartite motif containing 39
Reference MIM:605700|HGNC:HGNC:10065|Ensembl:ENSG00000204599|HPRD:09298|Vega:OTTHUMG00000031066
Gene type protein-coding
Map location 6p21.3
Pascal p-value 6.65E-14
Sherlock p-value 0.732
eGene Myers' cis & trans

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:PGCnp Genome-wide Association Study GWAS
GSMA_I Genome scan meta-analysis Psr: 0.033

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP ID Chromosome Position eGene Gene Entrez ID pvalue qvalue TSS distance eQTL type
rs10245517 chr7 98407757 TRIM39 56658 0.14 trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 -26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section III. Gene Ontology annotation

Molecular function 去的术语 Evidence Neuro keywords PubMed ID
GO:0003674 molecular_function ND -
GO:0008270 zinc ion binding IEA -
GO:0042802 identical protein binding 新闻学会 16189514
GO:0046872 metal ion binding IEA -
Biological process 去的术语 Evidence Neuro keywords PubMed ID
GO:0008150 biological_process ND -
Cellular component 去的术语 Evidence Neuro keywords PubMed ID
GO:0005575 cellular_component ND -
GO:0005622 intracellular IEA -

Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
SHEPARD CRUSH AND BURN MUTANT DN 185 111 All SZGR 2.0 genes in this pathway
KRIGE RESPONSE TO TOSEDOSTAT 6HR UP 953 554 All SZGR 2.0 genes in this pathway
KRIGE RESPONSE TO TOSEDOSTAT 24HR UP 783 442 All SZGR 2.0 genes in this pathway
MCCABE BOUND BY HOXC6 469 239 All SZGR 2.0 genes in this pathway
ZWANG CLASS 1 TRANSIENTLY INDUCED BY EGF 516 308 All SZGR 2.0 genes in this pathway

Section VI. microRNA annotation

miRNA family Target position miRNA ID miRNA seq
UTR start UTR end Match method
miR-124.1 905 911 1A hsa-miR-124a UUAAGGCACGCGGUGAAUGCCA
miR-124/506 1393 1399 m8 hsa-miR-506 UAAGGCACCCUUCUGAGUAGA
hsa-miR-124brain UAAGGCACGCGGUGAAUGCC
miR-181 1160 1166 1A hsa-miR-181abrain AACAUUCAACGCUGUCGGUGAGU
hsa-miR-181bSZ AACAUUCAUUGCUGUCGGUGGG
hsa-miR-181cbrain AACAUUCAACCUGUCGGUGAGU
hsa-miR-181dbrain AACAUUCAUUGUUGUCGGUGGGUU
miR-182 1241 1247 1A hsa-miR-182 UUUGGCAAUGGUAGAACUCACA
miR-375 1448 1454 1A hsa-miR-375 UUUGUUCGUUCGGCUCGCGUGA
miR-431 807 814 1A,m8 hsa-miR-431 UGUCUUGCAGGCCGUCAUGCA
miR-496 1162 1168 1A hsa-miR-496 AUUACAUGGCCAAUCUC
miR-543 913 920 1A,m8 hsa-miR-543 AAACAUUCGCGGUGCACUUCU
miR-96 1241 1247 1A hsa-miR-96brain UUUGGCACUAGCACAUUUUUGC