Gene Page:SEMA3G

Summary?
GeneID 56920
Symbol SEMA3G
Synonyms sem2
Description semaphorin 3G
Reference HGNC:HGNC:30400|Ensembl:ENSG00000010319|HPRD:14251|Vega:OTTHUMG00000158570
Gene type protein-coding
Map location 3p21.1
Pascal p-value 0.048
Fetal beta -0.967
eGene Myers' cis & trans

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:PGCnp Genome-wide Association Study GWAS
LK:YES Genome-wide Association Study This data set included 99 genes mapped to the 22 regions. The 24 leading SNPs were also included in CV:Ripke_2013

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP ID Chromosome Position eGene Gene Entrez ID pvalue qvalue TSS distance eQTL type
rs6687849 chr1 175904808 SEMA3G 56920 0.01 trans
rs2481653 chr1 176044120 SEMA3G 56920 0.01 trans
rs2502827 chr1 176044216 SEMA3G 56920 0 trans
rs12405921 chr1 206695730 SEMA3G 56920 0.12 trans
rs16829545 chr2 151977407 SEMA3G 56920 9.543E-12 trans
rs3845734 chr2 171125572 SEMA3G 56920 6.508E-4 trans
rs7584986 chr2 184111432 SEMA3G 56920 4.73E-8 trans
rs2183142 chr4 159232695 SEMA3G 56920 0.13 trans
rs3111196 chr5 54402889 SEMA3G 56920 0.16 trans
rs17762315 chr5 76807576 SEMA3G 56920 0.04 trans
rs6887062 chr5 123850762 SEMA3G 56920 0.07 trans
rs1368303 chr5 147672388 SEMA3G 56920 0.17 trans
rs11166603 chr8 136578102 SEMA3G 56920 0.2 trans
rs4075663 chr11 18793398 SEMA3G 56920 0.14 trans
rs4265582 chr11 18797649 SEMA3G 56920 0.13 trans
rs16955618 chr15 29937543 SEMA3G 56920 9.348E-19 trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
KEGG AXON GUIDANCE 129 103 All SZGR 2.0 genes in this pathway
DAIRKEE TERT TARGETS UP 380 213 All SZGR 2.0 genes in this pathway
SCHAEFFER PROSTATE DEVELOPMENT 6HR UP 176 115 All SZGR 2.0 genes in this pathway
CUI TCF21 TARGETS 2 DN 830 547 All SZGR 2.0 genes in this pathway
SMID BREAST CANCER BASAL DN 701 446 All SZGR 2.0 genes in this pathway
BOQUEST STEM CELL CULTURED VS FRESH UP 425 298 All SZGR 2.0 genes in this pathway
CHEN METABOLIC SYNDROM NETWORK 1210 725 All SZGR 2.0 genes in this pathway
NAKAYAMA SOFT TISSUE TUMORS PCA2 DN 80 51 All SZGR 2.0 genes in this pathway
ZWANG TRANSIENTLY UP BY 1ST EGF PULSE ONLY 1839 928 All SZGR 2.0 genes in this pathway
NABA ECM附属 171 89 All SZGR 2.0 genes in this pathway
NABA MATRISOME ASSOCIATED 753 411 All SZGR 2.0 genes in this pathway
NABA MATRISOME 1028 559 All SZGR 2.0 genes in this pathway