基因页:Smarcd1
Summary?
基因 | 6602 |
象征 | Smarcd1 |
Synonyms | baf60a | cracd1 | rsc6p |
Description | SWI/SNF相关,矩阵相关,染色质的肌动蛋白依赖性调节剂,亚家族D,成员1 |
Reference | MIM:601735|HGNC:HGNC:11106|Ensembl:ENSG00000066117|HPRD:03438|Vega:OTTHUMG00000150194 |
基因类型 | 蛋白质编码 |
Map location | 12q13-Q14 |
Pascal p-value | 3.415E-4 |
Sherlock p-value | 0.371 |
Support | 染色质重塑基因 |
Gene in Data Sources
基因集名称 | Method of gene set | Description | 信息 |
---|---|---|---|
CV:PGCnp | 全基因组协会研究 | GWAS | |
Network | Shortest path distance of core genes in the Human protein-protein interaction network | PPI网络中最短路径的贡献:0.1006 |
Section I. Genetics and epigenetics annotation
第二节。转录组注释
一般基因表达(GTEX)
![无法使用](http://www.tjghsg.com/bioinfo/SZGR/GeneImg/SMARCD1_DE_GTEx.png)
时间变化的基因表达(brainspan)
Footnote:
SC:亚皮质区域;SM:感觉运动区域;FC:额叶皮层;和TP:颞顶皮层
ST1:胎儿(13-26个概念后周),ST2:婴儿早期至童年(4个月至11年)和ST3:青春期至成年期(13-23年)
所示的栏表示表达分布的较低25%和上层25%。
大脑区域的顶级共表达基因
前10个积极共表达的基因 | ||
Gene | 皮尔逊的相关性 | 斯皮尔曼的相关性 |
DENND5A | 0.82 | 0.77 |
CYTSB | 0.82 | 0.81 |
RNF130 | 0.80 | 0.76 |
SPG20 | 0.79 | 0.80 |
jam3 | 0.79 | 0.76 |
COL4A5 | 0.78 | 0.79 |
GLTP | 0.77 | 0.80 |
lass2 | 0.77 | 0.75 |
CHD1L | 0.77 | 0.75 |
MOSPD2 | 0.76 | 0.77 |
前10个负共表达基因 | ||
Gene | 皮尔逊的相关性 | 斯皮尔曼的相关性 |
AC087071.1 | -0.43 | -0.38 |
FAM159B | -0.43 | -0.40 |
RP9P | -0.41 | -0.37 |
AF347015.21 | -0.38 | -0.14 |
AC135724.1 | -0.37 | -0.30 |
IL32 | -0.37 | -0.24 |
Spdya | -0.37 | -0.33 |
AC027807.2 | -0.36 | -0.31 |
AC120053.1 | -0.34 | -0.28 |
SPINK8 | -0.32 | -0.31 |
第三节。基因本体论注释
分子功能 | 去学期 | 证据 | 神经关键字 | PubMed ID |
---|---|---|---|---|
GO:0003713 | 转录共激活因子活性 | TAS | 8804307 | |
GO:0032947 | 蛋白质复合物支架 | 艾达 | 12917342 | |
生物过程 | 去学期 | 证据 | 神经关键字 | PubMed ID |
去:0006357 | regulation of transcription from RNA polymerase II promoter | TAS | 8804307 | |
GO:0048096 | 染色质介导的转录维护 | IMP | 12917342 | |
Cellular component | 去学期 | 证据 | 神经关键字 | PubMed ID |
去:0005634 | nucleus | IEA | - | |
去:0005654 | 核质 | TAS | 8804307 | |
去:0005730 | 核仁 | 艾达 | 18029348 | |
GO:0016585 | 染色质重塑复合物 | 艾达 | 12917342 |
Section IV. Protein-protein interaction annotation
互动者 | 别名b | 官方全名b | 实验 | Source | PubMed ID |
---|---|---|---|---|---|
baz1b | WBSCR10 | WBSCR9 | WSTF | bromodomain毗邻锌指域,1 b | - | HPRD,BioGRID | 12837248 |
Calcoco2 | MGC17318 |NDP52 | calcium binding and coiled-coil domain 2 | Two-hybrid | Biogrid | 16189514 |
CCDC85B | dipa | 细胞色素氧化酶led-coil domain containing 85B | Two-hybrid | Biogrid | 16189514 |
ESR1 | DKFZp686N23123 | ER | ESR | ESRA | Era | NR3A1 | estrogen receptor 1 | 重构的复合物 | Biogrid | 12917342 |
fos | AP-1 |c-fos | V-FOS FBJ鼠骨肉瘤病毒性癌基因同源物 | - | HPRD | 11053448 |
GATA1 | ERYF1 | GF-1 | GF1 | NFE1 | GATA结合蛋白1(球蛋白转录因子1) | 重构的复合物 | Biogrid | 11018012 |
ING1 | p24ing1c |p33 |p33ing1 |p33ing1b |P47 |P47ing1a | 成长家族抑制剂,成员1 | Affinity Capture-MS | Biogrid | 11784859 |
六月 | AP-1 |AP1 |C-Jun | jun oncogene | - | HPRD | 11053448 |
KLF1 | eklf | 类似Kruppel的因子1(红细胞) | 重构的复合物 | Biogrid | 11018012 |
KRT15 | CK15 |K15 |k1co | 角蛋白15 | Two-hybrid | Biogrid | 16189514 |
LDOC1 | BCUR1 | Mar7 | Mart7 | 亮氨酸拉链,在癌症中下调1 | Two-hybrid | Biogrid | 16189514 |
NR1H4 | 酒吧|FXR |HRR-1 |HRR1 |MGC163445 |RIP14 | 核受体亚科1,H组,成员4 | 重构的复合物 | Biogrid | 12917342 |
NR3C1 | GCCR |GCR |gr |grl | 核受体亚科3,C组,成员1(糖皮质激素受体) | - | HPRD,BioGRID | 12917342 |
PGR | NR3C3 | PR | 孕酮受体 | 重构的复合物 | Biogrid | 12917342 |
Smarca4 | BAF190 |BRG1 |FLJ39786 |SNF2 |snf2-beta |snf2l4 |SNF2LB |swi2 |HSNF2B | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 | 亲和力捕获 - 韦斯特恩 | Biogrid | 12917342 |
Smarcc1 | BAF155 |cracc1 |RSC8 |srg3 |SWI3 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 | 亲和力捕获 - 韦斯特恩 | Biogrid | 12917342 |
Smarcc2 | BAF170 |cracc2 |RSC8 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 | 亲和力捕获 - 韦斯特恩 | Biogrid | 12917342 |
TNIP2 | Abin-2 |Abin2 |flip1 |klip |MGC4289 | TNFAIP3相互作用蛋白2 | - | HPRD | 12753905 |
TNIP2 | Abin-2 |Abin2 |flip1 |klip |MGC4289 | TNFAIP3相互作用蛋白2 | Abin-2与BAF60A相互作用。 | 绑定 | 12753905 |
USHBP1 | AIEBP |FLJ38709 |FLJ90681 |MCC2 | Usher综合征1C结合蛋白1 | Two-hybrid | Biogrid | 16189514 |
Section V. Pathway annotation
第六节。microRNA注释
mirna家族 | 目标位置 | miRNA ID | mirna seq | ||
---|---|---|---|---|---|
UTR开始 | UTR结束 | 匹配方法 | |||
mir-101 | 1592年 | 1598年 | M8 | hsa-miR-101 | uacaguacugauaacugaag |
miR-122 | 846 | 852 | 1a | HSA-MIR-122A | uggagugugacaaugguuuugu |
HSA-MIR-122A | uggagugugacaaugguuuugu | ||||
miR-133 | 1575年 | 1581 | 1a | HSA-MIR-133A | uugguccccuucaaccagcugu |
HSA-MIR-133B | uguguccccuucaaccagcua | ||||
mir-148/152 | 974 | 980 | 1a | HSA-MIR-148A | ucagugcacuacaacuuugu |
HSA-MIR-152brain | UCAGUGCAUGACACUUGGG | ||||
HSA-MIR-148B | ucagugcaucacacaacuuugu | ||||
miR-150 | 1242 | 1248 | 1a | HSA-MIR-150 | UCUCCCAACCCUUGUACCAGUG |
HSA-MIR-150 | UCUCCCAACCCUUGUACCAGUG | ||||
miR-199 | 1448 | 1455 | 1A,M8 | HSA-MIR-199A | CCCAGUGUUCAGACUACCUGUUC |
HSA-MIR-199B | cccaguguuuagacuaucuuc | ||||
miR-200bc/429 | 634 | 640 | M8 | hsa-miR-200b | uaauacugccugguaaugaugac |
hsa-miR-200c | UAAUACUGCCGGGUAAUGAUGG | ||||
hsa-miR-429 | UAAUACUGUCUGGUAAAACCGU | ||||
mir-21 | 425 | 432 | 1A,M8 | hsa-miR-21brain | UAGCUUAUCAGACUGAUGUUGA |
hsa-miR-590 | gagcuuauucauaaaaagugcag | ||||
mir-214 | 591 | 597 | M8 | hsa-miR-214brain | acagcaggcacagacaggcag |
hsa-miR-214brain | acagcaggcacagacaggcag | ||||
mir-223 | 1300 | 1307 | 1A,M8 | hsa-miR-223 | ugucuuugucaauacccc |
miR-370 | 1104 | 1111 | 1A,M8 | HSA-MIR-370brain | gccugggggguggaaccugg |
miR-490 | 1182 | 1188 | M8 | HSA-MIR-490 | caaccuggaggacuaugcugcug |
miR-491 | 1319 | 1325 | M8 | HSA-MIR-491brain | aguggggaacccuuccaugga |
mir-7 | 1178 | 1184 | 1a | HSA-MIR-7SZ | UGGAAGACUAGUGAUUUUGUUG |
HSA-MIR-7SZ | UGGAAGACUAGUGAUUUUGUUG | ||||
miR-99/100 | 897 | 903 | 1a | hsa-miR-99abrain | AACCCGUAGAUCCGAUCUUGUG |
hsa-miR-100brain | AACCCGUAGAUCCGAACUUGUG | ||||
hsa-miR-99bbrain | CACCCGUAGAACCGACCUUGCG |