Gene Page:ACTC1
Summary?
基因 | 70 |
象征 | ACTC1 |
Synonyms | actc | asd5 | cmd1r | cmh11 | lvnc4 |
Description | 肌动蛋白,α,心肌1 |
Reference | MIM:102540|HGNC:HGNC:143|ENSEMBL:ENSG00000159251|HPRD:00015|Vega:Otthumg00000129675 |
基因类型 | 蛋白质编码 |
Map location | 15q14 |
Pascal p-value | 0.006 |
主持人 | 元 |
Gene in Data Sources
基因集名称 | Method of gene set | Description | 信息 |
---|---|---|---|
PMID:cooccur | High-throughput literature-search | PubMed中的系统搜索与SCZ关键字共发生的基因。总共包括3027个基因。 | |
Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias | 点击显示详细信息 |
Network | Shortest path distance of core genes in the Human protein-protein interaction network | PPI网络中最短路径的贡献:0.0172 |
Section I. Genetics and epigenetics annotation
第二节。转录组注释
一般基因表达(GTEX)
![无法使用](http://www.tjghsg.com/bioinfo/SZGR/GeneImg/ACTC1_DE_GTEx.png)
时间变化的基因表达(brainspan)
Footnote:
SC:亚皮质区域;SM:感觉运动区域;FC:额叶皮层;和TP:颞顶皮层
ST1:胎儿(13-26个概念后周),ST2:婴儿早期至童年(4个月至11年)和ST3:青春期至成年期(13-23年)
所示的栏表示表达分布的较低25%和上层25%。
No co-expressed genes in brain regions
第三节。基因本体论注释
分子功能 | 去学期 | 证据 | 神经关键字 | PubMed ID |
---|---|---|---|---|
去:0000166 | nucleotide binding | IEA | - | |
去:0005515 | 蛋白质结合 | IEA | - | |
去:0005524 | ATP binding | 艾达 | 16611632 | |
去:0005198 | structural molecule activity | IEA | - | |
GO:0017022 | 肌球蛋白结合 | IPI | 16611632 | |
GO:0016887 | ATPase activity | 艾达 | 16611632|17765196 | |
生物过程 | 去学期 | 证据 | 神经关键字 | PubMed ID |
GO:0055008 | 心肌形态发生 | ISS | - | |
GO:0055003 | cardiac myofibril assembly | ISS | - | |
GO:0030240 | 肌肉细丝组件 | ISS | - | |
GO:0030048 | 基于肌动蛋白的运动 | 艾达 | 16611632 | |
GO:0006915 | 凋亡 | ISS | - | |
去:0031032 | 肌动球蛋白结构组织 | ISS | - | |
GO:0060047 | heart contraction | IMP | 9563954|17611253|17947298 |
|
Cellular component | 去学期 | 证据 | 神经关键字 | PubMed ID |
去:0005856 | 细胞骨架 | IEA | - | |
去:0005737 | cytoplasm | IEA | - | |
GO:0031674 | 我乐队 | ISS | - | |
GO:0042643 | 肌动蛋白,肌动蛋白部分 | 艾达 | 16611632 |
Section IV. Protein-protein interaction annotation
互动者 | 别名b | 官方全名b | 实验 | Source | PubMed ID |
---|---|---|---|---|---|
ablim3 | HMFN1661 | actin binding LIM protein family, member 3 | - | HPRD,BioGRID | 15337165 |
阿布拉 | 星星 | 肌动蛋白结合RHO激活蛋白 | - | HPRD | 11983702 |
动作 | PS1TP5BP1 | Actin,Beta | - | HPRD | 8913639 |
ACTN4 | ACTININ-4 | DKFZp686K23158 | FSGS | FSGS1 | 肌动蛋白,α4 | - | HPRD | 12042308 |
ACTR2 | ARP2 | ARP2肌动蛋白相关蛋白2同源物(酵母) | - | HPRD,BioGRID | 12019562 |
AFAP1 | AFAP |AFAP-110 |FLJ56849 | 肌动蛋白丝相关蛋白1 | 重构的复合物 | Biogrid | 12134071 |
ang | ALS9 | HEL168 | MGC22466 | MGC71966 | RNASE4 | RNASE5 | 血管生成蛋白,核糖核酸酶,rNase a家族,5 | - | HPRD | 8127865 |
CAPN1 | CANP | CANP1 | CANPL1 | muCANP | muCL | 钙蛋白酶1,(mu/i)大亚基 | CAPN1与ACTC相互作用。 | 绑定 | 12358155 |
CFL1 | CFL | Cofilin 1(非肌肉) | - | HPRD | 12207032 |
DMD | BMD |CMD3B |DXS142 |DXS164 |DXS206 |DXS230 |DXS239 |DXS268 |DXS269 |DXS270 | DXS272 | 肌营养不良 | - | HPRD | 11997265 |
dynll1 | DLC1 | DLC8 | DNCL1 | DNCLC1 | LC8 | LC8a | MGC126137 | MGC126138 | PIN | hdlc1 | Dynein,轻链,LC8型1 | - | HPRD | 14760703 |
EPB49 | DMT |FLJ78462 |FLJ98848 | erythrocyte membrane protein band 4.9 (dematin) | - | HPRD | 12011427 |
EZR | cvil |CVL |DKFZP762H157 |FLJ26216 |MGC1584 |vil2 | 埃兹林 | - | HPRD | 12271120 |
FSCN1 | FLJ38511 |SNL |p55 | fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus) | - | HPRD | 12139639 |
GC | DBP |DBP/GC |VDBG |VDBP | 组特异性成分(维生素D结合蛋白) | - | HPRD,BioGRID | 12452439|12554937 |
KLHL17 | RP11-54O7.6 | 类似Kelch的17(果蝇) | - | HPRD | 12063253 |
KPTN | 2e4 | kaptin(肌动蛋白结合蛋白) | - | HPRD | 12019562 |
LASP1 | LASP-1 |MLN50 | LIM和SH3蛋白1 | - | HPRD | 9848085 |
MIB2 | FLJ20648 |FLJ39787 |zzank1 |zzz5 | Mindbomb同源2(果蝇) | - | HPRD | 14507647 |
mylk | DKFZP686I10125 |FLJ12216 |KRP |MLCK |MLCK1 |MLCK108 |MLCK210 |MSTP083 |mylk1 |smmlck | 肌球蛋白轻链激酶 | - | HPRD | 12110694 |
PLEC1 | EBS1 |EBSO |HD1 |PCN |PLEC1B |PLTN | PLECTIN 1,中间丝结合蛋白500KDA | - | HPRD | 12136158 |
PPP1R9B | FLJ30345 |PPP1R6 |PPP1R9 |Spino |SPN | protein phosphatase 1, regulatory (inhibitor) subunit 9B | - | HPRD | 12270929|12417592 |
prkce | MGC125656 |MGC125657 |PKCE |npkc-epsilon | 蛋白激酶C,Epsilon | - | HPRD | 11968018 |
SCIN | KIAA1905 | Scinderin | - | HPRD | 12438125 |
Syne1 | 8B | CPG2 | DKFZp781J13156 | FLJ30878 | FLJ41140 | KIAA0796 | KIAA1262 | KIAA1756 | MYNE1 | SCAR8 | spectrin repeat containing, nuclear envelope 1 | - | HPRD | 12408964 |
SYNE2 | DKFZP434H2235 |DKFZP686E01115 |DKFZP686H1931 |FLJ11014 |FLJ43727 |FLJ45710 |FLJ46790 |KIAA1011 |nua |nuance | Nesprin-2 | SYNE-2 | spectrin repeat containing, nuclear envelope 2 | - | HPRD,BioGRID | 12118075|12408964 |
tnni3k | 卡克|MGC142099 |MGC33828 | TNNI3 interacting kinase | - | HPRD,BioGRID | 12721663 |
TWF1 | A6 |MGC23788 |MGC41876 |PTK9 | twinfilin, actin-binding protein, homolog 1 (Drosophila) | - | HPRD | 12207032 |
WAS | IMD2 | THC | WASP | Wiskott-Aldrich syndrome (eczema-thrombocytopenia) | - | HPRD | 12029088 |
WIPF1 | MGC111041 | PRPL-2 | WASPIP | WIP | 是/WASL相互作用蛋白家族,成员1 | - | HPRD | 12029088 |
Section V. Pathway annotation
第六节。microRNA注释
mirna家族 | Target position | miRNA ID | mirna seq | ||
---|---|---|---|---|---|
UTR开始 | UTR结束 | 匹配方法 | |||
miR-142-5p | 148 | 154 | 1a | HSA-MIR-142-5P | cauaaaguagaaagcacuac |
mir-299-5p | 157 | 163 | 1a | hsa-miR-299-5p | ugguuuaccgucccacauacau |
mir-30-5p | 105 | 112 | 1A,M8 | HSA-MIR-30A-5P | uguaaaacauccuccugagaag |
hsa-miR-30cbrain | UGUAAACAUCCUACACUCUCAGC | ||||
hsa-miR-30dSZ | UGUAAACAUCCCCGACUGGAAG | ||||
hsa-miR-30bSZ | uguaaacauccuaccucucagcu | ||||
hsa-miR-30e-5p | UGUAAACAUCCUUGACUGGA | ||||
miR-495 | 102 | 108 | M8 | HSA-MIR-495brain | Aaacaaacauggugcacuuuuu |