Gene Page:CNBP

Summary?
GeneID 7555
Symbol CNBP
Synonyms CNBP1|DM2|PROMM|RNF163|ZCCHC22|ZNF9
Description CCHC-type zinc finger, nucleic acid binding protein
Reference MIM:116955|HGNC:HGNC:13164|HPRD:00311|
Gene type protein-coding
Map location 3q21
Pascal p-value 0.009
Sherlock p-value 0.201

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:PGCnp Genome-wide Association Study GWAS
Network Shortest path distance of core genes in the Human protein-protein interaction network Contribution to shortest path in PPI network: 0.0324

Section I. Genetics and epigenetics annotation


Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 - 26页ostconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section III. Gene Ontology annotation

Molecular function 去的术语 Evidence Neuro keywords PubMed ID
GO:0003676 nucleic acid binding IEA -
GO:0003700 transcription factor activity TAS 2562787
GO:0005515 protein binding 新闻学会 17353931
GO:0008270 zinc ion binding IEA -
GO:0046872 metal ion binding IEA -
Biological process 去的术语 Evidence Neuro keywords PubMed ID
GO:0006355 regulation of transcription, DNA-dependent TAS 2562787
GO:0006350 transcription IEA -
GO:0006695 cholesterol biosynthetic process TAS 2562787
Cellular component 去的术语 Evidence Neuro keywords PubMed ID
GO:0005737 cytoplasm IEA -
GO:0005783 endoplasmic reticulum IEA -

Section IV. Protein-protein interaction annotation

Interactors Aliases B Official full name B Experimental Source PubMed ID
APOBEC3C APOBEC1L | ARDC2 | ARDC4 | ARP5 | MGC19485 | PBI | bK150C2.3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3C Affinity Capture-MS BioGRID 17353931
BXDC2 BRIX | FLJ11100 brix domain containing 2 Affinity Capture-MS BioGRID 17353931
DAP3 DAP-3 | DKFZp686G12159 | MGC126058 | MGC126059 | MRP-S29 | MRPS29 | bMRP-10 death associated protein 3 Affinity Capture-MS BioGRID 17353931
DHX9 DDX9 | LKP | NDHII | RHA DEAH (Asp-Glu-Ala-His) box polypeptide 9 Affinity Capture-MS BioGRID 17353931
EBNA1BP2 EBP2 | NOBP | P40 EBNA1 binding protein 2 Affinity Capture-MS BioGRID 17353931
ERH DROER | FLJ27340 enhancer of rudimentary homolog (Drosophila) Affinity Capture-MS BioGRID 17353931
HNRNPA3 2610510D13Rik | D10S102 | FBRNP | HNRPA3 | MGC138232 | MGC142030 heterogeneous nuclear ribonucleoprotein A3 Affinity Capture-MS BioGRID 17353931
HNRNPAB ABBP1 | FLJ40338 | HNRPAB heterogeneous nuclear ribonucleoprotein A/B Affinity Capture-MS BioGRID 17353931
HNRNPC C1 | C2 | HNRNP | HNRPC | MGC104306 | MGC105117 | MGC117353 | MGC131677 | SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) Affinity Capture-MS BioGRID 17353931
HNRNPR FLJ25714 | HNRPR | hnRNP-R heterogeneous nuclear ribonucleoprotein R Affinity Capture-MS BioGRID 17353931
HNRNPUL1 E1B-AP5 | E1BAP5 | FLJ12944 | HNRPUL1 heterogeneous nuclear ribonucleoprotein U-like 1 Affinity Capture-MS BioGRID 17353931
IGF2BP1 CRD-BP | CRDBP | IMP-1 | IMP1 | VICKZ1 | ZBP1 insulin-like growth factor 2 mRNA binding protein 1 Affinity Capture-MS BioGRID 17353931
IGF2BP3 DKFZp686F1078 | IMP-3 | IMP3 | KOC1 | VICKZ3 insulin-like growth factor 2 mRNA binding protein 3 Affinity Capture-MS BioGRID 17353931
PURA PUR-ALPHA | PUR1 | PURALPHA purine-rich element binding protein A Affinity Capture-MS BioGRID 17353931
RBMX HNRPG | RBMXP1 | RBMXRT | RNMX | hnRNP-G RNA binding motif protein, X-linked Affinity Capture-MS BioGRID 17353931
RPA3 REPA3 replication protein A3, 14kDa Affinity Capture-MS BioGRID 17353931
RPL23A FLJ27455 | MDA20 ribosomal protein L23a Affinity Capture-MS BioGRID 17353931
RPL3 MGC104284 | TARBP-B ribosomal protein L3 Affinity Capture-MS BioGRID 17353931
RPL31 MGC88191 ribosomal protein L31 Affinity Capture-MS BioGRID 17353931
RPL34 MGC111005 ribosomal protein L34 Affinity Capture-MS BioGRID 17353931
RPL35A - ribosomal protein L35a Affinity Capture-MS BioGRID 17353931
RPL36 DKFZp566B023 ribosomal protein L36 Affinity Capture-MS BioGRID 17353931
RPS16 - ribosomal protein S16 Affinity Capture-MS BioGRID 17353931
RPS19 DBA ribosomal protein S19 Affinity Capture-MS BioGRID 17353931
RPS3A FTE1 | MFTL | MGC23240 ribosomal protein S3A Affinity Capture-MS BioGRID 17353931
RSL1D1 CSIG | DKFZP564M182 | L12 | MGC138433 | MGC142259 | PBK1 ribosomal L1 domain containing 1 Affinity Capture-MS BioGRID 17353931
SYNCRIP GRY-RBP | HNRPQ1 | NSAP1 | RP1-3J17.2 | dJ3J17.2 | hnRNP-Q | pp68 synaptotagmin binding, cytoplasmic RNA interacting protein Affinity Capture-MS BioGRID 17353931


Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
ONKEN UVEAL MELANOMA DN 526 357 All SZGR 2.0 genes in this pathway
DIAZ CHRONIC MEYLOGENOUS LEUKEMIA UP 1382 904 All SZGR 2.0 genes in this pathway
RHEIN ALL GLUCOCORTICOID THERAPY DN 362 238 All SZGR 2.0 genes in this pathway
SCHLOSSER MYC TARGETS REPRESSED BY SERUM 159 93 All SZGR 2.0 genes in this pathway
SIMBULAN UV RESPONSE NORMAL DN 33 27 All SZGR 2.0 genes in this pathway
HATADA METHYLATED IN LUNG CANCER UP 390 236 All SZGR 2.0 genes in this pathway
PUJANA BRCA1 PCC NETWORK 1652 1023 All SZGR 2.0 genes in this pathway
PUJANA ATM PCC NETWORK 1442 892 All SZGR 2.0 genes in this pathway
PUJANA CHEK2 PCC NETWORK 779 480 All SZGR 2.0 genes in this pathway
LOPEZ MBD TARGETS 957 597 All SZGR 2.0 genes in this pathway
CAFFAREL RESPONSE TO THC 24HR 5 UP 34 23 All SZGR 2.0 genes in this pathway
BENPORATH NANOG TARGETS 988 594 All SZGR 2.0 genes in this pathway
SHEN SMARCA2 TARGETS UP 424 268 All SZGR 2.0 genes in this pathway
IIZUKA LIVER CANCER PROGRESSION L0 L1 UP 17 12 All SZGR 2.0 genes in this pathway
BYSTRYKH HEMATOPOIESIS STEM CELL AND BRAIN QTL TRANS 185 114 All SZGR 2.0 genes in this pathway
ZUCCHI METASTASIS UP 43 24 All SZGR 2.0 genes in this pathway
FLECHNER BIOPSY KIDNEY TRANSPLANT OK VS DONOR UP 555 346 All SZGR 2.0 genes in this pathway
PARK HSC AND MULTIPOTENT PROGENITORS 50 33 All SZGR 2.0 genes in this pathway
SESTO RESPONSE TO UV C0 107 72 All SZGR 2.0 genes in this pathway
GRADE COLON AND RECTAL CANCER UP 285 167 All SZGR 2.0 genes in this pathway
WANG TUMOR INVASIVENESS DN 210 128 All SZGR 2.0 genes in this pathway
GRESHOCK CANCER COPY NUMBER UP 323 240 All SZGR 2.0 genes in this pathway
ROME INSULIN TARGETS IN MUSCLE UP 442 263 All SZGR 2.0 genes in this pathway
BAE BRCA1 TARGETS UP 75 47 All SZGR 2.0 genes in this pathway
MARTENS TRETINOIN RESPONSE DN 841 431 All SZGR 2.0 genes in this pathway
KIM BIPOLAR DISORDER OLIGODENDROCYTE DENSITY CORR UP 682 440 All SZGR 2.0 genes in this pathway
PILON KLF1 TARGETS DN 1972 1213 All SZGR 2.0 genes in this pathway

Section VI. microRNA annotation

miRNA family Target position miRNA ID miRNA seq
UTR start UTR end Match method
miR-129-5p 174 180 1A hsa-miR-129brain CUUUUUGCGGUCUGGGCUUGC
hsa-miR-129-5p CUUUUUGCGGUCUGGGCUUGCU
miR-193 102 108 m8 hsa-miR-193a AACUGGCCUACAAAGUCCCAG
hsa-miR-193b AACUGGCCCUCAAAGUCCCGCUUU
miR-320 110 116 1A hsa-miR-320 AAAAGCUGGGUUGAGAGGGCGAA
miR-326 643 649 m8 hsa-miR-326 CCUCUGGGCCCUUCCUCCAG
miR-330 217 223 m8 hsa-miR-330brain GCAAAGCACACGGCCUGCAGAGA
miR-369-3p 42 48 m8 hsa-miR-369-3p AAUAAUACAUGGUUGAUCUUU
miR-378 689 695 1A hsa-miR-378 CUCCUGACUCCAGGUCCUGUGU
miR-381 737 743 1A hsa-miR-381 UAUACAAGGGCAAGCUCUCUGU
miR-494 764 770 1A hsa-miR-494brain UGAAACAUACACGGGAAACCUCUU
miR-495 220 226 1A hsa-miR-495brain AAACAAACAUGGUGCACUUCUUU