Gene Page:RNF112
Summary?
| GeneID | 7732 |
| Symbol | RNF112 |
| Synonyms | BFP|ZNF179 |
| Description | ring finger protein 112 |
| Reference | MIM:601237|HGNC:HGNC:12968|Ensembl:ENSG00000128482|HPRD:03140|Vega:OTTHUMG00000059601 |
| Gene type | protein-coding |
| Map location | 17p11.2 |
| Pascal p-value | 3.516E-5 |
| Sherlock p-value | 0.652 |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 -26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| DHX33 | 0.94 | 0.95 |
| ZFYVE20 | 0.93 | 0.94 |
| KDM2A | 0.93 | 0.93 |
| RAPGEF1 | 0.92 | 0.94 |
| UBN1 | 0.92 | 0.95 |
| KIAA1409 | 0.92 | 0.93 |
| BICD2 | 0.92 | 0.94 |
| PRDM15 | 0.91 | 0.94 |
| SLC12A6 | 0.91 | 0.94 |
| FOXK2 | 0.91 | 0.92 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| AF347015.31 | -0.70 | -0.76 |
| MT-CO2 | -0.69 | -0.76 |
| HIGD1B | -0.69 | -0.76 |
| FXYD1 | -0.69 | -0.73 |
| AF347015.21 | -0.69 | -0.81 |
| C1orf54 | -0.66 | -0.84 |
| AC021016.1 | -0.66 | -0.72 |
| AF347015.8 | -0.66 | -0.73 |
| AF347015.27 | -0.66 | -0.72 |
| COPZ2 | -0.65 | -0.69 |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| NIKOLSKY BREAST CANCER 17P11 AMPLICON | 10 | 8 | All SZGR 2.0 genes in this pathway |
| AFFAR YY1 TARGETS UP | 214 | 133 | All SZGR 2.0 genes in this pathway |
| SASAI TARGETS OF CXCR6 AND PTCH1 UP | 13 | 9 | All SZGR 2.0 genes in this pathway |
| BEIER GLIOMA STEM CELL DN | 66 | 42 | All SZGR 2.0 genes in this pathway |
| YOSHIMURA MAPK8 TARGETS UP | 1305 | 895 | All SZGR 2.0 genes in this pathway |
| MIKKELSEN ES ICP WITH H3K27ME3 | 42 | 27 | All SZGR 2.0 genes in this pathway |
| PEDRIOLI MIR31 TARGETS UP | 221 | 120 | All SZGR 2.0 genes in this pathway |