Gene Page:LY6G6E
Summary?
| GeneID | 79136 |
| Symbol | LY6G6E |
| Synonyms | C6orf22|G6e |
| Description | lymphocyte antigen 6 complex, locus G6E (pseudogene) |
| Reference | MIM:610437|HGNC:HGNC:13934|HPRD:14330| |
| Gene type | pseudo |
| Map location | 6p21.3 |
| Pascal p-value | 1E-12 |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
Top co-expressed genes in brain regions
| Top 10 positively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| LRRC62 | 0.46 | 0.58 |
| KCNN2 | 0.45 | 0.50 |
| GRIK5 | 0.44 | 0.57 |
| MED15 | 0.43 | 0.56 |
| WNK2 | 0.43 | 0.56 |
| CPT1C | 0.43 | 0.56 |
| 卡通ND2 | 0.43 | 0.50 |
| DLGAP4 | 0.43 | 0.54 |
| FRMPD3 | 0.43 | 0.53 |
| BRSK2 | 0.43 | 0.56 |
| Top 10 negatively co-expressed genes | ||
| Gene | Pearson's Correlation | Spearman's Correlation |
| AF347015.21 | -0.38 | -0.51 |
| GNG11 | -0.37 | -0.52 |
| MT-CO2 | -0.36 | -0.47 |
| NOSTRIN | -0.36 | -0.48 |
| HIGD1B | -0.36 | -0.50 |
| GIMAP5 | -0.36 | -0.46 |
| C1orf54 | -0.35 | -0.49 |
| AF347015.8 | -0.34 | -0.45 |
| AF347015.31 | -0.34 | -0.45 |
| PLA2G5 | -0.34 | -0.48 |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| DODD NASOPHARYNGEAL CARCINOMA UP | 1821 | 933 | All SZGR 2.0 genes in this pathway |
| SCHAEFFER PROSTATE DEVELOPMENT 48HR UP | 487 | 286 | All SZGR 2.0 genes in this pathway |
| MIKKELSEN MEF ICP WITH H3K27ME3 | 206 | 108 | All SZGR 2.0 genes in this pathway |
| MIKKELSEN ES ICP WITH H3K4ME3 | 718 | 401 | All SZGR 2.0 genes in this pathway |
| BRUINS UVC RESPONSE VIA TP53 GROUP A | 898 | 516 | All SZGR 2.0 genes in this pathway |
| PASINI SUZ12 TARGETS UP | 112 | 65 | All SZGR 2.0 genes in this pathway |
| FOSTER KDM1A TARGETS UP | 266 | 142 | All SZGR 2.0 genes in this pathway |