Gene Page:ABHD16A

Summary?
GeneID 7920
Symbol ABHD16A
Synonyms BAT5|D6S82E|NG26|PP199
Description abhydrolase domain containing 16A
Reference MIM:142620|HGNC:HGNC:13921|Ensembl:ENSG00000204427|HPRD:15929|Vega:OTTHUMG00000031177
Gene type protein-coding
Map location 6p21.3
Pascal p-value 1E-12
Sherlock p-value 0.101
Fetal beta -0.237
DMG 1 (# studies)
eGene Myers' cis & trans

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:PGCnp Genome-wide Association Study GWAS
DMG:Montano_2016 Genome-wide DNA methylation analysis This dataset includes 172 replicated associations between CpGs with schizophrenia. 1

Section I. Genetics and epigenetics annotation

@Differentially methylated gene

Probe Chromosome Position Nearest gene P (dis) Beta (dis) FDR (dis) Study
cg14986464 6 31669902 ABHD16A 2.6E-4 -0.005 0.172 DMG:Montano_2016

@eQTL annotation

SNP ID Chromosome Position eGene Gene Entrez ID pvalue qvalue TSS distance eQTL type
rs2518027 chr6 31436475 ABHD16A 7920 0.17 cis

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression during devlopment (BrainCloud)

Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section III. Gene Ontology annotation

Molecular function 去的术语 Evidence Neuro keywords PubMed ID
GO:0005515 protein binding 新闻学会 14667819|15231747
Cellular component 去的术语 Evidence Neuro keywords PubMed ID
GO:0016020 membrane IEA -
GO:0016021 integral to membrane IEA -

Section IV. Protein-protein interaction annotation

Interactors Aliases B Official full name B Experimental Source PubMed ID
ATP5G3 MGC125738 | P3 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) - HPRD,BioGRID 14667819
DNAJC1 DNAJL1 | ERdj1 | HTJ1 | MGC131954 | MTJ1 DnaJ (Hsp40) homolog, subfamily C, member 1 - HPRD,BioGRID 14667819
GPRC5C MGC131820 | RAIG-3 | RAIG3 G protein-coupled receptor, family C, group 5, member C - HPRD,BioGRID 14667819
HM13 H13 | IMP1 | IMPAS | MSTP086 | PSENL3 | PSL3 | SPP | dJ324O17.1 histocompatibility (minor) 13 - HPRD,BioGRID 14667819
HNRNPA1 HNRPA1 | MGC102835 heterogeneous nuclear ribonucleoprotein A1 - HPRD 14667819
IFITM1 9-27 | CD225 | IFI17 | LEU13 interferon induced transmembrane protein 1 (9-27) - HPRD,BioGRID 14667819
PILRB FDFACT1 | FDFACT2 paired immunoglobin-like type 2 receptor beta - HPRD 14667819
PTGS2 COX-2 | COX2 | GRIPGHS | PGG/HS | PGHS-2 | PHS-2 | hCox-2 prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) - HPRD 14667819
RNF5 RING5 | RMA1 ring finger protein 5 - HPRD,BioGRID 14667819
SAFB DKFZp779C1727 | HAP | HET | SAFB1 scaffold attachment factor B - HPRD,BioGRID 14667819
SPAG7 ACRP | FSA-1 | MGC20134 sperm associated antigen 7 - HPRD,BioGRID 14667819
TMEM147 MGC1936 | NIFIE14 transmembrane protein 147 - HPRD,BioGRID 14667819
TMEM222 C1orf160 | DKFZp564D0478 | MGC111002 transmembrane protein 222 - HPRD,BioGRID 14667819


Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
PEREZ TP63 TARGETS 355 243 All SZGR 2.0 genes in this pathway
PETRETTO HEART MASS QTL CIS UP 28 15 All SZGR 2.0 genes in this pathway
IVANOVA HEMATOPOIESIS STEM CELL LONG TERM 302 191 All SZGR 2.0 genes in this pathway
CUI TCF21 TARGETS 2 UP 428 266 All SZGR 2.0 genes in this pathway
ACEVEDO LIVER CANCER UP 973 570 All SZGR 2.0 genes in this pathway
ACEVEDO LIVER TUMOR VS NORMAL ADJACENT TISSUE UP 863 514 All SZGR 2.0 genes in this pathway