Gene Page:RPAP2
Summary?
| GeneID | 79871 |
| Symbol | RPAP2 |
| Synonyms | C1orf82|Rtr1 |
| Description | RNA polymerase II associated protein 2 |
| Reference | MIM:611476|HGNC:HGNC:25791|HPRD:07814| |
| Gene type | protein-coding |
| Map location | 1p22.1 |
| Pascal p-value | 0.015 |
| Sherlock p-value | 0.484 |
| eGene | Cortex Myers' cis & trans |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:PGCnp | Genome-wide Association Study | GWAS |
Section I. Genetics and epigenetics annotation
eQTL annotation
eQTL annotation| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs13447530 | chr1 | 91983798 | RPAP2 | 79871 | 0.01 | cis | ||
| rs1954436 | chr1 | 62248194 | RPAP2 | 79871 | 0.17 | trans | ||
| rs12463708 | chr2 | 149073943 | RPAP2 | 79871 | 0.09 | trans | ||
| rs16829545 | chr2 | 151977407 | RPAP2 | 79871 | 6.502E-7 | trans | ||
| rs7584986 | chr2 | 184111432 | RPAP2 | 79871 | 0 | trans | ||
| rs10183246 | chr2 | 237187882 | RPAP2 | 79871 | 0.13 | trans | ||
| rs9810143 | chr3 | 5060209 | RPAP2 | 79871 | 0.08 | trans | ||
| snp_a-1815771 | 0 | RPAP2 | 79871 | 0.15 | trans | |||
| rs12509866 | chr4 | 173017639 | RPAP2 | 79871 | 0.06 | trans | ||
| rs16955618 | chr15 | 29937543 | RPAP2 | 79871 | 5.276E-7 | trans | ||
| rs1024182 | chr20 | 19391376 | RPAP2 | 79871 | 0.13 | trans | ||
| rs6032295 | chr20 | 44178138 | RPAP2 | 79871 | 1.317E-4 | trans |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| THUM SYSTOLIC HEART FAILURE DN | 244 | 147 | All SZGR 2.0 genes in this pathway |
| GRAESSMANN APOPTOSIS BY DOXORUBICIN DN | 1781 | 1082 | All SZGR 2.0 genes in this pathway |
| GEORGES TARGETS OF MIR192 AND MIR215 | 893 | 528 | All SZGR 2.0 genes in this pathway |
| BONOME OVARIAN CANCER SURVIVAL SUBOPTIMAL DEBULKING | 510 | 309 | All SZGR 2.0 genes in this pathway |
| BREDEMEYER RAG SIGNALING NOT VIA ATM DN | 57 | 34 | All SZGR 2.0 genes in this pathway |
| MILI PSEUDOPODIA HAPTOTAXIS UP | 518 | 299 | All SZGR 2.0 genes in this pathway |