Gene Page:ITFG1

Summary?
GeneID 81533
Symbol ITFG1
Synonyms 2310047C21Rik|CDA08|LNKN-1|TIP
Description integrin alpha FG-GAP repeat containing 1
Reference MIM:611803|HGNC:HGNC:30697|Ensembl:ENSG00000129636|HPRD:16692|Vega:OTTHUMG00000133103
Gene type protein-coding
Map location 16q12.1
Pascal p-value 0.021
eGene Caudate basal ganglia
Myers' cis & trans
Support G2Cdb.humanPSD
G2Cdb.humanPSP

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:PGCnp Genome-wide Association Study GWAS
GSMA_IIE Genome scan meta-analysis (European-ancestry samples) Psr: 0.01775

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP ID Chromosome Position eGene Gene Entrez ID pvalue qvalue TSS distance eQTL type
rs823066 chr1 205771172 ITFG1 81533 0.01 trans
rs2716734 chr2 39947720 ITFG1 81533 0.01 trans
rs2716736 chr2 39947946 ITFG1 81533 0.01 trans
rs16837822 chr2 155406624 ITFG1 81533 0.19 trans
rs16837825 chr2 155407056 ITFG1 81533 0.19 trans
rs6729327 chr2 215397001 ITFG1 81533 0.14 trans
rs16869878 chr5 2523760 ITFG1 81533 0.13 trans
rs467856 chr5 3128168 ITFG1 81533 0.04 trans
snp_a-2169623 0 ITFG1 81533 0.08 trans
rs13175086 chr5 174691428 ITFG1 81533 2.566E-5 trans
rs10079090 chr5 174718575 ITFG1 81533 0.08 trans
rs2016128 chr6 42442743 ITFG1 81533 0.13 trans
rs4947631 chr7 50603378 ITFG1 81533 0.07 trans
rs17085704 chr9 85297313 ITFG1 81533 0.13 trans
rs16918008 chr9 101655002 ITFG1 81533 0.06 trans
rs7298298 chr12 17810638 ITFG1 81533 0.16 trans
rs9590075 chr13 95414389 ITFG1 81533 0.14 trans
rs6128541 chr20 57917688 ITFG1 81533 0.12 trans
rs225434 chr21 43724740 ITFG1 81533 0.07 trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section III. Gene Ontology annotation

Molecular function 去的术语 Evidence Neuro keywords PubMed ID
GO:0005515 protein binding IEA -
Cellular component 去的术语 Evidence Neuro keywords PubMed ID
GO:0005576 extracellular region IEA -
GO:0016020 membrane IEA -
GO:0016021 integral to membrane IEA -

Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
CHEMNITZ RESPONSE TO PROSTAGLANDIN E2 DN 391 222 All SZGR 2.0 genes in this pathway
HORIUCHI WTAP TARGETS UP 306 188 All SZGR 2.0 genes in this pathway
兰斯乳腺癌16问若以桑不光要拷贝数DN 26 19 All SZGR 2.0 genes in this pathway
MCBRYAN PUBERTAL BREAST 3 4WK UP 214 144 All SZGR 2.0 genes in this pathway
HAMAI APOPTOSIS VIA TRAIL UP 584 356 All SZGR 2.0 genes in this pathway
LIANG HEMATOPOIESIS STEM CELL NUMBER SMALL VS HUGE UP 38 29 All SZGR 2.0 genes in this pathway
SHEN SMARCA2 TARGETS UP 424 268 All SZGR 2.0 genes in this pathway
ZHANG RESPONSE TO IKK INHIBITOR AND TNF DN 103 64 All SZGR 2.0 genes in this pathway
GOLDRATH HOMEOSTATIC PROLIFERATION 171 102 All SZGR 2.0 genes in this pathway
MCCLUNG COCAINE REWARD 5D 79 62 All SZGR 2.0 genes in this pathway
ACEVEDO LIVER CANCER UP 973 570 All SZGR 2.0 genes in this pathway
BRUINS UVC RESPONSE VIA TP53 GROUP A 898 516 All SZGR 2.0 genes in this pathway