Gene Page:ELMOD3

Summary?
GeneID 84173
Symbol ELMOD3
Synonyms DFNB88|LST3|RBED1|RBM29
Description ELMO domain containing 3
Reference MIM:615427|HGNC:HGNC:26158|运用:ENSG00000115459|HPRD:07973|Vega:OTTHUMG00000130170
Gene type protein-coding
Map location 2p11.2
Pascal p-value 0.015
Sherlock p-value 0.845
eGene Myers' cis & trans

Gene in Data Sources
Gene set name Method of gene set Description Info
CV:PGCnp Genome-wide Association Study GWAS

Section I. Genetics and epigenetics annotation

@eQTL annotation

SNP ID Chromosome Position eGene Gene Entrez ID pvalue qvalue TSS distance eQTL type
rs1146358 chr1 116657767 ELMOD3 84173 0.03 trans
rs16854815 chr1 204931605 ELMOD3 84173 0.09 trans
rs1934577 chr1 246016542 ELMOD3 84173 0.11 trans
rs2716734 chr2 39947720 ELMOD3 84173 7.757E-6 trans
rs2716736 chr2 39947946 ELMOD3 84173 7.757E-6 trans
rs6754175 chr2 135333296 ELMOD3 84173 0.01 trans
rs11928084 chr3 4138812 ELMOD3 84173 0.09 trans
rs16850133 chr3 140030776 ELMOD3 84173 0 trans
rs7638929 chr3 140031075 ELMOD3 84173 0.06 trans
rs2597796 chr4 17535859 ELMOD3 84173 0.19 trans
rs467856 chr5 3128168 ELMOD3 84173 0.09 trans
rs9637832 chr5 15757838 ELMOD3 84173 0.18 trans
snp_a-2169623 0 ELMOD3 84173 4.35E-6 trans
rs6873234 chr5 169299967 ELMOD3 84173 0.01 trans
rs7383548 0 ELMOD3 84173 0.04 trans
rs2016128 chr6 42442743 ELMOD3 84173 0.15 trans
rs1587434 chr6 66615354 ELMOD3 84173 2.405E-8 trans
rs4947631 chr7 50603378 ELMOD3 84173 0.1 trans
rs10257132 chr7 51422943 ELMOD3 84173 0.15 trans
rs529539 chr7 84003500 ELMOD3 84173 0.01 trans
rs870686 chr8 25253521 ELMOD3 84173 0.15 trans
rs10503771 chr8 25304019 ELMOD3 84173 0.03 trans
rs10994470 chr10 51558659 ELMOD3 84173 0.09 trans
rs1935471 chr10 56120565 ELMOD3 84173 0.2 trans
rs12767540 chr10 56171628 ELMOD3 84173 0.12 trans
rs17106311 chr10 87897271 ELMOD3 84173 0.14 trans
rs17107175 chr10 88646323 ELMOD3 84173 0.09 trans
rs1539587 chr10 115372155 ELMOD3 84173 0.08 trans
rs7129903 chr11 7775320 ELMOD3 84173 0.09 trans
rs4944475 chr11 83985410 ELMOD3 84173 0.18 trans
rs11183748 chr12 47516125 ELMOD3 84173 0.05 trans
rs12423193 chr12 63753383 ELMOD3 84173 0.01 trans
rs9888446 chr12 63785677 ELMOD3 84173 0 trans
rs1400878 chr12 83609397 ELMOD3 84173 0.12 trans
rs16945217 chr12 115679171 ELMOD3 84173 0.09 trans
rs998923 chr13 35507810 ELMOD3 84173 0.02 trans
rs2764585 chr13 46880234 ELMOD3 84173 0.09 trans
rs9590075 chr13 95414389 ELMOD3 84173 0.09 trans
snp_a-2222355 0 ELMOD3 84173 0 trans
rs6495316 chr15 78986100 ELMOD3 84173 0.02 trans
rs1461211 chr15 88628773 ELMOD3 84173 0.18 trans
rs12596294 chr16 72587092 ELMOD3 84173 0.19 trans
rs4792093 chr17 10939374 ELMOD3 84173 0.08 trans
rs7223509 chr17 10940048 ELMOD3 84173 0.08 trans
rs1015663 chr17 14238086 ELMOD3 84173 0.15 trans
rs349973 chr17 50642288 ELMOD3 84173 0.13 trans
rs8078127 chr17 50761342 ELMOD3 84173 0.03 trans
rs10512600 chr17 72812978 ELMOD3 84173 0.04 trans
rs2661679 chr17 76172103 ELMOD3 84173 0.12 trans
rs7217417 chr17 76173174 ELMOD3 84173 0.16 trans
rs10521889 chrX 149836861 ELMOD3 84173 0.03 trans

Section II. Transcriptome annotation

General gene expression (GTEx)

Not available

Gene expression of temporal and spatial changes (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
死神:胎儿(13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.

No co-expressed genes in brain regions


Section III. Gene Ontology annotation

Biological process 去的术语 Evidence Neuro keywords PubMed ID
GO:0006909 phagocytosis IEA -
Cellular component 去的术语 Evidence Neuro keywords PubMed ID
GO:0005856 cytoskeleton IEA -

Section V. Pathway annotation

Pathway name Pathway size # SZGR 2.0 genes in pathway Info
GERY CEBP TARGETS 126 90 All SZGR 2.0 genes in this pathway
GRADE COLON CANCER UP 871 505 All SZGR 2.0 genes in this pathway
WAKABAYASHI ADIPOGENESIS PPARG RXRA BOUND 36HR 152 88 All SZGR 2.0 genes in this pathway
WAKABAYASHI ADIPOGENESIS PPARG RXRA BOUND 8D 882 506 All SZGR 2.0 genes in this pathway

Section VI. microRNA annotation

miRNA family Target position miRNA ID miRNA seq
UTR start UTR end Match method
miR-138 1209 1215 1A hsa-miR-138brain AGCUGGUGUUGUGAAUC
miR-204/211 335 341 m8 hsa-miR-204brain UUCCCUUUGUCAUCCUAUGCCU
hsa-miR-211 UUCCCUUUGUCAUCCUUCGCCU