Gene Page:NCOR2
Summary?
GeneID | 9612 |
Symbol | NCOR2 |
Synonyms | CtG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 |
Description | 核受体Corepressor 2 |
参考erence | MIM:600848|HGNC:HGNC:7673|Ensembl:ENSG00000196498|HPRD:02910|Vega:OTTHUMG00000150455 |
基因类型 | 蛋白质编码 |
Map location | 12q24 |
Pascal p-value | 0.008 |
Sherlock p-value | 0.704 |
胎儿β | -0.704 |
DMG | 2 (# studies) |
主持人 | Myers' cis & trans |
Support | CompositeSet Darnell FMRP targets |
Gene in Data Sources
基因集名称 | Method of gene set | Description | 信息 |
---|---|---|---|
CV:PGCnp | Genome-wide Association Study | GWAS | |
DMG:Montano_2016 | 全基因组DNA甲基化分析 | this dataset includes 172 replicated associations between CpGs with schizophrenia. | 6 |
DMG:Wockner_2014 | 全基因组DNA甲基化分析 | 该数据集包括4641个差异甲基化探针,对应于精神分裂症患者(n = 24)和对照组(n = 24)之间的2929个独特基因。 | 6 |
DNM:Gulsuner_2013 | Whole Exome Sequencing analysis | 155 DNMs identified by exome sequencing of quads or trios of schizophrenia individuals and their parents. |
Section I. Genetics and epigenetics annotation
DNM表
Gene | 染色体 | 位置 | 参考 | alt | 成绩单 | 一个一个change | Mutation type | Sift | CG46 | 特征 | 学习 |
---|---|---|---|---|---|---|---|---|---|---|---|
NCOR2 | chr12 | 124856705 | C | t | NM_001077261 NM_001206654 NM_006312 |
。 。 。 |
silent silent silent |
Schizophrenia | DNM:Fromer_2014 | ||
NCOR2 | chr12 | 124821527 | G | 一个 | NM_001077261 NM_001206654 NM_006312 |
p.1953R>C p.1953R>C p.1963R>C |
missense missense missense |
Schizophrenia | DNM:Gulsuner_2013 |
Differentially methylated gene
Probe | 染色体 | 位置 | Nearest gene | p(dis) | Beta (dis) | fdr(dis) | 学习 |
---|---|---|---|---|---|---|---|
cg26385126 | 12 | 124912021 | NCOR2 | 4.99E-7 | 0.006 | 0.014 | DMG:Montano_2016 |
cg27431877 | 12 | 124911924 | NCOR2 | 2.29E-5 | 0.005 | 0.066 | DMG:Montano_2016 |
CG11311053 | 12 | 124912049 | NCOR2 | 6.7e-5 | 0.006 | 0.105 | DMG:Montano_2016 |
ch.12.2647993F | 12 | 124837365 | NCOR2 | 1.157E-4 | -0.649 | 0.029 | DMG:Wockner_2014 |
cg26385126 | 12 | 124912021 | NCOR2 | 2.517E-4 | 0.489 | 0.037 | DMG:Wockner_2014 |
CG09942210 | 12 | 124965227 | NCOR2 | 3.422E-4 | -0.48 | 0.041 | DMG:Wockner_2014 |
eQTL annotation
SNP ID | 染色体 | 位置 | 主持人 | Gene Entrez ID | pvalue | QVALUE | TSS距离 | eQTL type |
---|---|---|---|---|---|---|---|---|
rs11057881 | chr12 | 125371972 | NCOR2 | 9612 | 0.09 | 顺式 | ||
RS13297121 | Chr9 | 71994881 | NCOR2 | 9612 | 0.1 | 反式 |
第二节。转录组注释
一般基因表达(GTEX)
![Not available](http://www.tjghsg.com/bioinfo/SZGR/GeneImg/NCOR2_DE_GTEx.png)
Gene expression during devlopment (BrainCloud)
Footnote:
共有269个时间点秘密策划,n = 38胎儿samples (x=1:38). Each triangle represents one time point.
时间变化的基因表达(brainspan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
所示的栏表示表达分布的较低25%和上层25%。
No co-expressed genes in brain regions
第三节。基因本体论注释
分子的乐趣ction | 去学期 | 证据 | 神经关键字 | PubMed ID |
---|---|---|---|---|
GO:0004872 | receptor activity | IEA | - | |
去:0003677 | DNA binding | IEA | - | |
GO:0003714 | 反式cription corepressor activity | t一个S | 7566127 | |
去:0005112 | Notch binding | IPI | 10713164 | |
去:0005515 | 蛋白质结合 | IPI | 10713164|15016912 | |
Biological process | 去学期 | 证据 | 神经关键字 | PubMed ID |
GO:0006355 | 调节转录,DNA依赖性的调节 | IEA | - | |
GO:0045449 | 转录的调节 | IEA | - | |
Cellular component | 去学期 | 证据 | 神经关键字 | PubMed ID |
去:0005634 | nucleus | t一个S | 10097068 | |
去:0005730 | nucleolus | IDA | 18029348 |
Section IV. Protein-protein interaction annotation
互动者 | 别名b | 官方全名b | 实验 | Source | PubMed ID |
---|---|---|---|---|---|
ar | 一个IS | DHTR | HUMARA | KD | NR3C4 | SBMA | SMAX1 | TFM | 雄激素受体 | 亲和力捕获 - 韦斯特恩 Co-localization 重构的复合物 two-hybrid |
Biogrid | 11923464|12441355 |14593076 |
Bcl6 | BCL5 | BCL6A | LAZ3 | ZBTB27 | ZNF51 | B细胞CLL/淋巴瘤6 | - | HPRD,BioGRID | 9765306 |
Bcl6 | BCL5 | BCL6A | LAZ3 | ZBTB27 | ZNF51 | B细胞CLL/淋巴瘤6 | Bcl6 BTB结构域中的侧向凹槽基序与SMRT的BBD基序相互作用。 | 绑定 | 15531890 |
BIRC3 | 一个IP1 | API2 | CIAP2 | HAIP1 | HIAP1 | MALT2 | MIHC | RNF49 | baculoviral IAP repeat-containing 3 | CIAP-2启动子与SMRT相互作用。 | 绑定 | 15494311 |
CBFA2T2 | DKFZp313F2116 | EHT | MTGR1 | ZMYND3 | 核心结合因子,runt域,α亚基2;易位到2 | - | HPRD | 12242670 |
CCL3 | G0S19-1 |ld78alpha |MIP-1-Alpha |MIP1A |Scya3 | chemokine (C-C motif) ligand 3 | SMRT interacts with the CCL3 promoter region. | 绑定 | 15531890 |
CCND2 | Kiak0002 |MGC102758 | cyclin D2 | SMRT与CCND2启动子区域相互作用。 | 绑定 | 15531890 |
CDKN2A | arF | CDK4I | CDKN2 | CMM2 | INK4 | INK4a | MLM | MTS1 | TP16 | p14 | p14ARF | p16 | p16INK4 | p16INK4a | p19 | cyclin-dependent kinase inhibitor 2A (melanoma, p16, inhibits CDK4) | NCOR2(SMRT)与P-P14(ARF)(P14(ARF)启动子)相互作用。 | 绑定 | 15729358 |
CHUK | ikbka |ikk-alpha |ikk1 |ikka |nfkbika |TCF16 | conserved helix-loop-helix ubiquitous kinase | IKK-alpha phosphorylates SMRT. | 绑定 | 15494311 |
CIR | - | CBF1 interacting corepressor | - | HPRD,BioGRID | 11509665 |
ESR1 | DKFZp686N23123 | ER | ESR | ESRA | Era | NR3A1 | estrogen receptor 1 | ESR1 (ER-alpha) interacts with NCOR2 (SMRT). This interaction was modeled on a demonstrated interaction between ESR1 from an unspecified species and NCOR2 from an unspecified species. | 绑定 | 12738788 |
ESR1 | DKFZp686N23123 | ER | ESR | ESRA | Era | NR3A1 | estrogen receptor 1 | - | HPRD | 9702189 |
fos | AP-1 |C-fos | v-fos FBJ murine osteosarcoma viral oncogene homolog | - | HPRD,BioGRID | 10777532 |
HDAC1 | DKFZp686H12203 | GON-10 | HD1 | RPD3 | RPD3L1 | histone deacetylase 1 | 亲和力捕获 - 韦斯特恩 Co-purification |
Biogrid | 11013263|11739383 |
HDAC10 | DKFZp761B039 | MGC149722 | histone deacetylase 10 | - | HPRD,BioGRID | 11739383 |
HDAC2 | RPD3 |YAF1 | histone deacetylase 2 | Co-purification | Biogrid | 11013263 |
HDAC3 | HD3 |RPD3 |RPD3-2 | histone deacetylase 3 | 一个ffinity Capture-MS 亲和力捕获 - 韦斯特恩 Co-fractionation Co-purification 重构的复合物 |
Biogrid | 10809664|10944117 |11013263|11804585 |12502735|12628926 |14527417 |
HDAC4 | HA6116 |HD4 |HDAC-A |hdaca |KIAA0288 | histone deacetylase 4 | - | HPRD,BioGRID | 11804585 |
HDAC5 | FLJ90614 |HD5 |NY-CO-9 | histone deacetylase 5 | - | HPRD | 10869435 |
HDAC5 | FLJ90614 |HD5 |NY-CO-9 | histone deacetylase 5 | 重构的复合物 two-hybrid |
Biogrid | 10640275 |
HDAC7 | DKFZP586J0917 |FLJ99588 |HD7A |HDAC7A | histone deacetylase 7 | 亲和力捕获 - 韦斯特恩 | Biogrid | 11466315 |
IKZF1 | HS.54452 |IK1 |Ikaros |lyf1 |Pro0758 |Znfn1a1 |Hik-1 | Ikaros家庭锌指1(Ikaros) | 亲和力捕获 - 韦斯特恩 | Biogrid | 11959865 |
IL8 | CXCL8 | GCP-1 | GCP1 | LECT | LUCT | LYNAP | MDNCF | MONAP | NAF | NAP-1 | NAP1 | interleukin 8 | IL-8启动子与SMRT相互作用。 | 绑定 | 15494311 |
INPP5K | PPS | SKIP | inositol polyphosphate-5-phosphatase K | two-hybrid | Biogrid | 11509665 |
六月 | AP-1 |AP1 |C-Jun | jun oncogene | 重构的复合物 two-hybrid |
Biogrid | 10777532 |
MYBL2 | B-MYB | BMYB | MGC15600 | V-Myb髓细胞增生病毒癌基因同源物(Avian)类似2 | - | HPRD | 11997503 |
MYOD1 | MYF3 | MYOD | PUM | bHLHc1 | myogenic differentiation 1 | - | HPRD | 10406466 |
NCOA3 | 一个CtR | AIB-1 | AIB1 | CAGH16 | CTG26 | KAT13B | MGC141848 | RAC3 | SRC3 | TNRC14 | TNRC16 | TRAM-1 | pCIP | 核受体共激活因子3 | - | HPRD | 9267036 |
NCOR1 | KIAA1047 |MGC104216 |n-cor |trac1 |HCIT529I10 |hn-cor | 核受体共抑制剂1 | Co-fractionation | Biogrid | 10944117 |
NFKB1 | DKFZP686C01211 |EBP-1 |kbf1 |MGC54151 |nf-kappa-b |NFKB-P105 |NFKB-P50 |P105 | B细胞中Kappa光多肽基因增强子的核因子1 | - | HPRD | 10777532 |
NFKBIA | IKBA | MAD-3 | NFKBI | nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha | 亲和力捕获 - 韦斯特恩 | Biogrid | 12589049 |
NR3C1 | GCCR |GCR |gr |grl | 核受体亚科3,C组,成员1(糖皮质激素受体) | - | HPRD,BioGRID | 12011091 |
NR4A1 | GFRP1 | HMR | MGC9485 | N10 | NAK-1 | NGFIB | NP10 | NUR77 | TR3 | 核受体亚科4,A组,成员1 | - | HPRD,BioGRID | 11559707 |
PML | MYL | PP8675 | RNF71 | TRIM19 | promyelocytic leukemia | - | HPRD,BioGRID | 11585900 |
POU2F1 | OCT1 | OTF1 | POU class 2 homeobox 1 | - | HPRD,BioGRID | 11134019 |
PPARA | MGC2237 | MGC2452 | NR1C1 | PPAR | hPPAR | 过氧化物酶体增殖物激活受体α | - | HPRD,BioGRID | 11845213 |
ppard | FAAR | MGC3931 | NR1C2 | NUC1 | NUCI | NUCII | PPAR-beta | PPARB | peroxisome proliferator-activated receptor delta | - | HPRD,BioGRID | 11867749 |
ppard | FAAR | MGC3931 | NR1C2 | NUC1 | NUCI | NUCII | PPAR-beta | PPARB | peroxisome proliferator-activated receptor delta | PPAR-DELTA与SMRT相互作用。这种相互作用是根据未指定来源的PPAR-DELTA和SMRT之间的相互作用进行建模的。 | 绑定 | 12970571 |
拉拉 | NR1B1 | RAR | retinoic acid receptor, alpha | 亲和力捕获 - 韦斯特恩 重构的复合物 |
Biogrid | 9256429|11929748 |
拉拉 | NR1B1 | RAR | retinoic acid receptor, alpha | NCOR2(SMRT)与P-RAR-ALPHA2(RAR-ALPHA2启动子)相互作用。 | 绑定 | 15729358 |
RBPJ | CBF1 | IGKJRB | IGKJRB1 | KBF2 | MGC61669 | RBP-J | RBPJK | RBPSUH | SUH | csl | recombination signal binding protein for immunoglobulin kappa J region | - | HPRD,BioGRID | 11509665 |
RELA | MGC131774 |NFKB3 |P65 | V-REL网状内皮症病毒性癌基因同源物A(Avian) | - | HPRD,BioGRID | 12589049 |
runx1t1 | 一个ML1T1 | CBFA2T1 | CDR | ETO | MGC2796 | MTG8 | MTG8b | ZMYND2 | 与RUNT相关的转录因子1;易位为1(Cyclin D相关) | - | HPRD,BioGRID | 11113190 |
SAP30 | - | SIN3A相关蛋白,30KDA | - | HPRD | 9702189 |
SAP30 | - | SIN3A相关蛋白,30KDA | Co-purification | Biogrid | 11013263 |
sin3a | DKFZP434K2235 |FLJ90319 |KIAA0700 | SIN3同源物A,转录调节剂(酵母) | Co-fractionation 重构的复合物 |
Biogrid | 10640275|10944117 |
SIRT1 | SIR2L1 | sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae) | SIRT1与SMRT相互作用。 | 绑定 | 15175761 |
SMARCA4 | BAF190 | BRG1 | FLJ39786 | SNF2 | SNF2-BETA | SNF2L4 | SNF2LB | SWI2 | hSNF2b | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 | Co-fractionation | Biogrid | 10944117 |
SNW1 | Bx42 | MGC119379 | NCOA-62 | PRPF45 | Prp45 | SKIIP | SKIP | SNW domain containing 1 | 亲和力捕获 - 韦斯特恩 体外 in vivo two-hybrid |
Biogrid | 10644367|10713164 |
SNW1 | Bx42 | MGC119379 | NCOA-62 | PRPF45 | Prp45 | SKIIP | SKIP | SNW domain containing 1 | - | HPRD | 10713164|11509665 |
SPEN | KIAA0929 |薄荷|RP1-134O19.1 |锋利的 | spen homolog, transcriptional regulator (Drosophila) | - | HPRD,BioGRID | 11331609 |
SRF | MCM1 | serum response factor (c-fos serum response element-binding transcription factor) | - | HPRD,BioGRID | 10777532 |
Stat5一个 | MGF | STAT5 | signal transducer and activator of transcription 5A | - | HPRD | 11726519 |
Stat5B | Stat5 | signal transducer and activator of transcription 5B | - | HPRD | 11726519 |
tBL1X | EBI | SMAP55 | TBL1 | 跨多霉素(β)类似1倍连接 | - | HPRD,BioGRID | 10809664 |
tHRB | ERBA-BETA | ERBA2 | GRTH | MGC126109 | MGC126110 | NR1A2 | PRTH | THR1 | THRB1 | THRB2 | thyroid hormone receptor, beta (erythroblastic leukemia viral (v-erb-a) oncogene homolog 2, avian) | 重构的复合物 | Biogrid | 9751500 |
VDR | NR1I1 | vitamin D (1,25- dihydroxyvitamin D3) receptor | 重构的复合物 | Biogrid | 12460926 |
YWHAE | 14-3-3E | FLJ45465 | KCIP-1 | MDCR | MDS | 酪氨酸3-单加氧酶/色氨酸5-单加氧酶激活蛋白,epsilon多肽 | 14-3-3- epsilon与SMRT相互作用。 | 绑定 | 15494311 |
ZBTB16 | PLZF | ZNF145 | zinc finger and BTB domain containing 16 | - | HPRD | 9256429|14982881 |
ZBTB16 | PLZF | ZNF145 | zinc finger and BTB domain containing 16 | 亲和力捕获 - 韦斯特恩 重构的复合物 two-hybrid |
Biogrid | 9256429|9765306 |14982881 |
ZBTB16 | PLZF | ZNF145 | zinc finger and BTB domain containing 16 | SMRT与PLZF相互作用。这种相互作用是基于未指定物种的SMRT和PLZF之间的相互作用进行建模的。 | 绑定 | 9486654 |
Section V. Pathway annotation
路径名 | 路径大小 | # SZGR 2.0 genes in pathway | 信息 |
---|---|---|---|
Kegg Notch信号通路 | 47 | 35 | 一个ll SZGR 2.0 genes in this pathway |
Biocarta Carm er途径 | 35 | 27 | 一个ll SZGR 2.0 genes in this pathway |
Biocarta EGFR Smrte途径 | 11 | 11 | 一个ll SZGR 2.0 genes in this pathway |
BIOCARTA PPARA PATHWAY | 58 | 43 | 一个ll SZGR 2.0 genes in this pathway |
BIOCARTA ETS PATHWAY | 18 | 12 | 一个ll SZGR 2.0 genes in this pathway |
BIOCARTA RARRXR PATHWAY | 15 | 9 | 一个ll SZGR 2.0 genes in this pathway |
PID NOTCH PATHWAY | 59 | 49 | 一个ll SZGR 2.0 genes in this pathway |
PID HDAC CLASSII PATHWAY | 34 | 27 | 一个ll SZGR 2.0 genes in this pathway |
PID HDAC Classi途径 | 66 | 50 | 一个ll SZGR 2.0 genes in this pathway |
PID RXR VDR PATHWAY | 26 | 24 | 一个ll SZGR 2.0 genes in this pathway |
PID ERA GENOMIC PATHWAY | 65 | 37 | 一个ll SZGR 2.0 genes in this pathway |
PID RETINOIC ACID PATHWAY | 30 | 23 | 一个ll SZGR 2.0 genes in this pathway |
PID HES HEY PATHWAY | 48 | 39 | 一个ll SZGR 2.0 genes in this pathway |
REACTOME DEVELOPMENTAL BIOLOGY | 396 | 292 | 一个ll SZGR 2.0 genes in this pathway |
REACTOME NOTCH1 INTRACELLULAR DOMAIN REGULATES TRANSCRIPTION | 46 | 28 | 一个ll SZGR 2.0 genes in this pathway |
Notch的Reactome信号传导1 | 70 | 46 | 一个ll SZGR 2.0 genes in this pathway |
REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | 38 | 26 | 一个ll SZGR 2.0 genes in this pathway |
REACTOME DOWNREGULATION OF SMAD2 3 SMAD4 TRANSCRIPTIONAL ACTIVITY | 20 | 14 | 一个ll SZGR 2.0 genes in this pathway |
Reactome通用转录途径 | 352 | 181 | 一个ll SZGR 2.0 genes in this pathway |
REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | 478 | 302 | 一个ll SZGR 2.0 genes in this pathway |
反应组脂肪酸三酰甘油和酮体代谢 | 168 | 115 | 一个ll SZGR 2.0 genes in this pathway |
白色脂肪细胞分化的Reactome转录调节 | 72 | 53 | 一个ll SZGR 2.0 genes in this pathway |
Notch的Reactome信号传导 | 103 | 64 | 一个ll SZGR 2.0 genes in this pathway |
REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | 63 | 42 | 一个ll SZGR 2.0 genes in this pathway |
HOLLMANN APOPTOSIS VIA CD40 UP | 201 | 125 | 一个ll SZGR 2.0 genes in this pathway |
GAZDA钻石黑芬贫血红斑dn | 493 | 298 | 一个ll SZGR 2.0 genes in this pathway |
周的炎症反应生活 | 485 | 293 | 一个ll SZGR 2.0 genes in this pathway |
HOEBEKE LYMPHOID STEM CELL UP | 95 | 64 | 一个ll SZGR 2.0 genes in this pathway |
DN SENESE HDAC3目标 | 536 | 332 | 一个ll SZGR 2.0 genes in this pathway |
EWSR1 FLII融合DN的Kinsey目标 | 329 | 219 | 一个ll SZGR 2.0 genes in this pathway |
ENK UV响应表皮DN | 508 | 354 | 一个ll SZGR 2.0 genes in this pathway |
SCHEIDEREIT IKK TARGETS | 18 | 15 | 一个ll SZGR 2.0 genes in this pathway |
MARTIN INTERACT WITH HDAC | 44 | 31 | 一个ll SZGR 2.0 genes in this pathway |
SCHLOSSER SERUM RESPONSE AUGMENTED BY MYC | 108 | 74 | 一个ll SZGR 2.0 genes in this pathway |
DACOSTA UV RESPONSE VIA ERCC3 DN | 855 | 609 | 一个ll SZGR 2.0 genes in this pathway |
DACOSTA UV RESPONSE VIA ERCC3 COMMON DN | 483 | 336 | 一个ll SZGR 2.0 genes in this pathway |
Pujana ATM PCC网络 | 1442 | 892 | 一个ll SZGR 2.0 genes in this pathway |
Buytaert光动力疗法应力DN | 637 | 377 | 一个ll SZGR 2.0 genes in this pathway |
FERREIRA EWINGS SARCOMA UNSTABLE VS STABLE DN | 98 | 59 | 一个ll SZGR 2.0 genes in this pathway |
SCHAEFFER PROSTATE DEVELOPMENT 48HR DN | 428 | 306 | 一个ll SZGR 2.0 genes in this pathway |
Flechner PBL肾脏移植OK vs捐助者 | 151 | 100 | 一个ll SZGR 2.0 genes in this pathway |
KLEIN PRIMARY EFFUSION LYMPHOMA UP | 51 | 29 | 一个ll SZGR 2.0 genes in this pathway |
HSIAO LIVER SPECIFIC GENES | 244 | 154 | 一个ll SZGR 2.0 genes in this pathway |
皮肤上的theilgaard中性粒细胞 | 77 | 52 | 一个ll SZGR 2.0 genes in this pathway |
MARTINEZ RESPONSE TO TRABECTEDIN | 50 | 32 | 一个ll SZGR 2.0 genes in this pathway |
卫星对干扰素βdn的响应 | 52 | 33 | 一个ll SZGR 2.0 genes in this pathway |
阿尔茨海默氏症疾病 | 1691 | 1088 | 一个ll SZGR 2.0 genes in this pathway |
Sesto对UV C5的反应 | 46 | 36 | 一个ll SZGR 2.0 genes in this pathway |
SATO SILENCED BY METHYLATION IN PANCREATIC CANCER 1 | 419 | 273 | 一个ll SZGR 2.0 genes in this pathway |
DOUGLAS BMI1 TARGETS UP | 566 | 371 | 一个ll SZGR 2.0 genes in this pathway |
MITSIADES RESPONSE TO APLIDIN UP | 439 | 257 | 一个ll SZGR 2.0 genes in this pathway |
Hsiao家政基因 | 389 | 245 | 一个ll SZGR 2.0 genes in this pathway |
MARTENS BOUND BY PML RARA FUSION | 456 | 287 | 一个ll SZGR 2.0 genes in this pathway |
PILON KLF1 TARGETS DN | 1972 | 1213 | 一个ll SZGR 2.0 genes in this pathway |
BHAT ESR1 TARGETS NOT VIA AKT1 UP | 211 | 131 | 一个ll SZGR 2.0 genes in this pathway |
BHAT ESR1 TARGETS VIA AKT1 UP | 281 | 183 | 一个ll SZGR 2.0 genes in this pathway |
Section VI. microRNA annotation
miRNA family | target position | miRNA ID | mirna seq | ||
---|---|---|---|---|---|
UTR开始 | UTR结束 | 匹配方法 | |||
miR-10 | 670 | 677 | 1A,M8 | hsa-miR-10a | UACCCUGUAGAUCCGAAUUUGUG |
hsa-miR-10b | uacccuguagaaccgaauuugu | ||||
mir-124.1 | 169 | 175 | 1A | hsa-miR-124a | UUAAGGCACGCGGUGAAUGCCA |
miR-125/351 | 215 | 221 | M8 | hsa-miR-125bbrain | ucccugagacccuaacuuguga |
hsa-miR-125abrain | UCCCUGAGACCCUUUAACCUGUG | ||||
miR-184 | 136 | 143 | 1A,M8 | HSA-MIR-184 | uggacggaaCugauaagggu |
miR-29 | 232 | 238 | M8 | HSA-MIR-29ASZ | UAGCACCAUCUGAAAUCGGUU |
HSA-MIR-29BSZ | UAGCACCAUUUGAAAUCAGUGUU | ||||
HSA-MIR-29CSZ | UAGCACCAUUUGAAAUCGGU | ||||
mir-30-5p | 224 | 230 | M8 | hsa-miR-30a-5p | UGUAAACAUCCUCGACUGGAAG |
hsa-miR-30cbrain | UGUAAACAUCCUACACUCUCAGC | ||||
hsa-miR-30dSZ | UGUAAACAUCCCCGACUGGAAG | ||||
hsa-miR-30bSZ | uguaaacauccuaccucucagcu | ||||
hsa-miR-30e-5p | UGUAAACAUCCUUGACUGGA | ||||
mir-331 | 217 | 223 | 1A | hsa-miR-331brain | GCCCCUGGGCCUAUCCUAGAA |
mir-9 | 377 | 383 | M8 | hsa-miR-9SZ | UCUUUGGUUAUCUAGCUGUAUGA |