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| Gene ID | Symbol | Synonyms | Official Full Name | Location | SZ group? | Functional group? |
|---|---|---|---|---|---|---|
| 1643 | DDB2 | DDBB | UV-DDB2 | XPE | damage specific DNA binding protein 2 | 11p11.2 | CV:PGCnp | |
| 2188 | FANCF | FAF | Fanconi anemia complementation group F | 11p15 | CV:PGCnp DMG:Jaffe_2016 |
|
| 2965 | GTF2H1 | BTF2 | P62 | TFB1 | TFIIH | general transcription factor IIH subunit 1 | 11p15.1-p14 | CV:PGCnp Network PMID:cooccur |
|
| 2237 | FEN1 | FEN-1 | MF1 | RAD2 | flap structure-specific endonuclease 1 | 11q12 | DMG:Nishioka_2013 DMG:Wockner_2014 PMID:cooccur |
|
| 57804 | POLD4 | POLDS | p12 | polymerase (DNA) delta 4, accessory subunit | 11q13 | PMID:cooccur | |
| 10714 | POLD3 | P66 | P68 | PPP1R128 | polymerase (DNA) delta 3, accessory subunit | 11q14 | CV:PGCnp | |
| 472 | ATM | AT1 | ATA | ATC | ATD | ATDC | ATE | TEL1 | TELO1 | ATM serine/threonine kinase | 11q22-q23 | CV:PGCnp GO_Annotation GSMA_I Network PMID:cooccur |
INTRACELLULAR SIGNAL TRANSDUCTION Ascano FMRP targets |
| 3014 | H2AFX | H2A.X | H2A/X | H2AX | H2A histone family member X | 11q23.3 | CV:PGCnp DMG:Wockner_2014 GSMA_I |
|
| 5893 | RAD52 | - | RAD52 homolog, DNA repair protein | 12p13-p12.2 | CV:PGCnp | |
| 23583 | SMUG1 | FDG | HMUDG | UNG3 | single-strand-selective monofunctional uracil-DNA glycosylase 1 | 12q13.13 | CV:PGCnp PMID:cooccur |
|
| 6996 | TDG | hTDG | thymine DNA glycosylase | 12q24.1 | CV:PGCnp PMID:cooccur |
|
| 121642 | ALKBH2 | ABH2 | alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase | 12q24.11 | CV:PGCnp | |
| 5426 | POLE | CRCS12 | FILS | POLE1 | polymerase (DNA) epsilon, catalytic subunit | 12q24.3 | CV:PGCnp PMID:cooccur |
Ascano FMRP targets |
| 675 | BRCA2 | BRCC2 | BROVCA2 | FACD | FAD | FAD1 | FANCD | FANCD1 | GLM3 | PNCA2 | XRCC11 | breast cancer 2 | 13q12.3 | CV:PGCnp GO_Annotation Network PMID:cooccur |
|
| 5983 | RFC3 | RFC38 | replication factor C subunit 3 | 13q13.2 | CV:PGCnp DMG:Jaffe_2016 |
|
| 328 | APEX1 | APE | APE1 | APEN | APEX | APX | HAP1 | REF1 | apurinic/apyrimidinic endodeoxyribonuclease 1 | 14q11.2 | DMG:Nishioka_2013 GSMA_I Network |
|
| 5427 | POLE2 | DPE2 | polymerase (DNA) epsilon 2, accessory subunit | 14q21-q22 | CV:PGCnp | |
| 55775 | TDP1 | - | tyrosyl-DNA phosphodiesterase 1 | 14q32.11 | CV:PGCnp DMG:Nishioka_2013 |
|
| 7158 | TP53BP1 | 53BP1 | TDRD30 | TP53 | p202 | p53BP1 | tumor protein p53 binding protein 1 | 15q15-q21 | CV:PGCnp | G2Cdb.humanNRC G2Cdb.humanPSP Ascano FMRP targets |
| 79728 | PALB2 | FANCN | PNCA3 | partner and localizer of BRCA2 | 16p12.2 | CV:GWAScat CV:GWASdb CV:PGCnp GSMA_IIE PMID:cooccur |
|
| 2072 | ERCC4 | ERCC11 | FANCQ | RAD1 | XFEPS | XPF | excision repair cross-complementation group 4 | 16p13.12 | CV:PGCnp GSMA_IIE |
|
| 4350 | MPG | AAG | ADPG | APNG | CRA36.1 | MDG | Mid1 | PIG11 | PIG16 | anpg | N-methylpurine DNA glycosylase | 16p13.3 | DNM:Fromer_2014 PMID:cooccur |
CompositeSet |
| 2175 | FANCA | FA | FA-H | FA1 | FAA | FACA | FAH | FANCH | Fanconi anemia complementation group A | 16q24.3 | CV:PGCnp | |
| 5430 | POLR2A | POLR2 | POLRA | RPB1 | RPBh1 | RPO2 | RPOL2 | RpIILS | hRPB220 | hsRPB1 | polymerase (RNA) II subunit A | 17p13.1 | CV:PGCnp PMID:cooccur |
CompositeSet Darnell FMRP targets |
| 6117 | RPA1 | HSSB | MST075 | REPA1 | RF-A | RP-A | RPA70 | replication protein A1 | 17p13.3 | CV:PGCnp DMG:Wockner_2014 |
Ascano FMRP targets |
| 3980 | LIG3 | LIG2 | ligase III, DNA, ATP-dependent | 17q11.2-q12 | CV:PGCnp | Ascano FMRP targets |
| 672 | BRCA1 | BRCAI | BRCC1 | BROVCA1 | FANCS | IRIS | PNCA4 | PPP1R53 | PSCP | RNF53 | breast cancer 1 | 17q21 | CV:PGCnp DMG:Wockner_2014 Network PMID:cooccur |
|
| 83990 | BRIP1 | BACH1 | FANCJ | OF | BRCA1 interacting protein C-terminal helicase 1 | 17q22.2 | CV:PGCnp DMG:Nishioka_2013 |
|
| 56949 | XAB2 | HCNP | HCRN | NTC90 | SYF1 | XPA binding protein 2 | 19p13.2 | CV:PGCnp | Ascano FMRP targets |
| 5434 | POLR2E | RPABC1 | RPB5 | XAP4 | hRPB25 | hsRPB5 | polymerase (RNA) II subunit E | 19p13.3 | CV:PGCnp | |
| 5438 | POLR2I | RPB9 | hRPB14.5 | polymerase (RNA) II subunit I | 19q12 | CV:PGCnp DMG:Jaffe_2016 |
|
| 7515 | XRCC1 | RCC | X-ray repair complementing defective repair in Chinese hamster cells 1 | 19q13.2 | Association PMID:cooccur |
G2Cdb.humanPSD G2Cdb.humanPSP |
| 5424 | POLD1 | CDC2 | CRCS10 | MDPL | POLD | polymerase (DNA) delta 1, catalytic subunit | 19q13.3 | CV:PGCnp DMG:Wockner_2014 Expression |
|
| 2068 | ERCC2 | COFS2 | EM9 | TFIIH | TTD | TTD1 | XPD | excision repair cross-complementation group 2 | 19q13.3 | DMG:Jaffe_2016 | |
| 2067 | ERCC1 | COFS4 | RAD10 | UV20 | excision repair cross-complementation group 1 | 19q13.32 | DMG:Jaffe_2016 | |
| 7398 | USP1 | UBP | ubiquitin specific peptidase 1 | 1p31.3 | CV:PGCnp DMG:Jaffe_2016 GSMA_IIA |
|
| 6118 | RPA2 | REPA2 | RP-A p32 | RP-A p34 | RPA32 | replication protein A2 | 1p35 | CV:PGCnp DMG:Jaffe_2016 DMG:Wockner_2014 |
|
| 10459 | MAD2L2 | MAD2B | POLZ2 | REV7 | MAD2 mitotic arrest deficient-like 2 (yeast) | 1p36 | CV:PGCnp DMG:Wockner_2014 |
|
| 5111 | PCNA | ATLD2 | proliferating cell nuclear antigen | 20pter-p12 | Network PMID:cooccur |
|
| 55120 | FANCL | FAAP43 | PHF9 | POG | Fanconi anemia complementation group L | 2p16.1 | CV:PGCnp | |
| 8930 | MBD4 | MED1 | methyl-CpG binding domain 4 DNA glycosylase | 3q21.3 | PMID:cooccur | Chromatin Remodeling Genes |
| 545 | ATR | FCTCS | FRP1 | MEC1 | SCKL | SCKL1 | ATR serine/threonine kinase | 3q23 | CV:PGCnp PMID:cooccur |
Ascano FMRP targets |
| 5437 | POLR2H | RPABC3 | RPB17 | RPB8 | polymerase (RNA) II subunit H | 3q28 | DMG:Jaffe_2016 | |
| 1022 | CDK7 | CAK1 | CDKN7 | HCAK | MO15 | STK1 | p39MO15 | cyclin-dependent kinase 7 | 5q12.1 | GO_Annotation | |
| 1161 | ERCC8 | CKN1 | CSA | UVSS2 | excision repair cross-complementation group 8 | 5q12.1 | CV:PGCnp | |
| 7518 | XRCC4 | SSMED | X-ray repair complementing defective repair in Chinese hamster cells 4 | 5q14.2 | CV:PGCnp DMG:Nishioka_2013 PMID:cooccur |
|
| 5429 | POLH | RAD30 | RAD30A | XP-V | XPV | polymerase (DNA) eta | 6p21.1 | CV:PGCnp DMG:Wockner_2014 GSMA_IIE |
|
| 2968 | GTF2H4 | P52 | TFB2 | TFIIH | general transcription factor IIH subunit 4 | 6p21.3 | CV:PGCnp DMG:Jaffe_2016 GSMA_I |
|
| 9656 | MDC1 | NFBD1 | mediator of DNA damage checkpoint 1 | 6p21.3 | CV:PGCnp DMG:Jaffe_2016 DMG:Wockner_2014 GSMA_I |
|
| 5980 | REV3L | POLZ | REV3 | REV3 like, DNA directed polymerase zeta catalytic subunit | 6q21 | CV:PGCnp DMG:Jaffe_2016 |
CompositeSet Darnell FMRP targets |
| 5425 | POLD2 | - | polymerase (DNA) delta 2, accessory subunit | 7p13 | CV:PGCnp DMG:Wockner_2014 |
|
| 5982 | RFC2 | RFC40 | replication factor C subunit 2 | 7q11.23 | CNV:YES CV:PGCnp DMG:Jaffe_2016 |
|
| 5591 | PRKDC | DNA-PKcs | DNAPK | DNPK1 | HYRC | HYRC1 | IMD26 | XRCC7 | p350 | protein kinase, DNA-activated, catalytic polypeptide | 8q11 | CV:PGCnp DMG:vanEijk_2014 DNM:McCarthy_2014 GO_Annotation Network |
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS |
| 6917 | TCEA1 | GTF2S | SII | TCEA | TF2S | TFIIS | transcription elongation factor A1 | 8q11.2 | CV:PGCnp DMG:Jaffe_2016 |
|
| 4683 | NBN | AT-V1 | AT-V2 | ATV | NBS | NBS1 | P95 | nibrin | 8q21 | CV:PGCnp | |
| 2189 | FANCG | FAG | XRCC9 | Fanconi anemia complementation group G | 9p13 | CV:PGCnp DMG:Jaffe_2016 |
|
| 2176 | FANCC | FA3 | FAC | FACC | Fanconi anemia complementation group C | 9q22.3 | CV:PGCnp DMG:Jaffe_2016 DMG:Wockner_2014 |
Ascano FMRP targets |
| 7507 | XPA | XP1 | XPAC | xeroderma pigmentosum, complementation group A | 9q22.3 | CV:PGCnp DMG:Jaffe_2016 |
|
| 5887 | RAD23B | HHR23B | HR23B | P58 | RAD23 homolog B, nucleotide excision repair protein | 9q31.2 | CV:PGCnp DMG:Jaffe_2016 |
|