Search results: The pahtwayp1839has 62 genes in the original annotation. Currently, there are 44 genes in SZGR 2.0 (with evidence in schizophrenia) that are present at this pathway.

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Gene ID Symbol Synonyms Official Full Name Location SZ group? Functional group?
2625 GATA3 HDR | HDRS GATA binding protein 3 10p15 CV:PGCnp
DEG:Maycox_2009
DMG:Jaffe_2016
4791 NFKB2 CVID10 | H2TF1 | LYT-10 | LYT10 | NF-kB2 | p100 | p49/p100 | p52 nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 10q24 CV:PGCnp
DMG:Nishioka_2013
GO_Annotation
Network
133 ADM AM | PAMP adrenomedullin 11p15.4 DMG:Jaffe_2016
PMID:cooccur
4041 LRP5 BMND1 | EVR1 | EVR4 | HBM | LR3 | LRP-5 | LRP7 | OPPG | OPS | OPTA1 | VBCH2 LDL receptor related protein 5 11q13.4 CV:GWASdb
CV:PGCnp
DMG:Wockner_2014
DNM:McCarthy_2014
Ascano FMRP targets
7299 TYR ATN | CMM8 | OCA1 | OCA1A | OCAIA | SHEP3 tyrosinase 11q14.3 CV:PGCnp
CV:PheWAS
PMID:cooccur
7450 VWF F8VWF | VWD von Willebrand factor 12p13.3 CV:PGCnp
Expression
PMID:cooccur
928 CD9 BTCC-1 | DRAP-27 | MIC3 | MRP-1 | TSPAN-29 | TSPAN29 CD9 molecule 12p13.3 CV:PGCnp
DMG:Wockner_2014
GO_Annotation
2065 ERBB3 ErbB-3 | HER3 | LCCS2 | MDA-BF-1 | c-erbB-3 | c-erbB3 | erbB3-S | p180-ErbB3 | p45-sErbB3 | p85-sErbB3 erb-b2 receptor tyrosine kinase 3 12q13 Association
CV:PGCnp
GO_Annotation
GR_COR
GR_Ng
GR_WM
Network
PMID:cooccur
22822 PHLDA1 DT1P1B11 | PHRIP | TDAG51 pleckstrin homology like domain family A member 1 12q15 CV:GWASdb
CV:PGCnp
PMID:cooccur
688 KLF5 BTEB2 | CKLF | IKLF Kruppel-like factor 5 (intestinal) 13q22.1 Association
CV:PGCnp
PMID:cooccur
22795 NID2 NID-2 nidogen 2 14q22.1 CV:PGCnp
DMG:Wockner_2014
7127 TNFAIP2 B94 | EXOC3L3 TNF alpha induced protein 2 14q32 CV:PGCnp
DEG:Zhao_2015
4502 MT2A MT2 metallothionein 2A 16q13 CV:PGCnp
PMID:cooccur
1003 CDH5 7B4 | CD144 cadherin 5 16q22.1 CV:PGCnp
DNM:Fromer_2014
GO_Annotation
PMID:cooccur
CELL ADHESION AND TRANSSYNAPTIC SIGNALING
CompositeSet
8720 MBTPS1 PCSK8 | S1P | SKI-1 membrane bound transcription factor peptidase, site 1 16q24 CV:PGCnp
DNM:Xu_2012
GO_Annotation
CompositeSet
Ascano FMRP targets
8714 ABCC3 ABC31 | EST90757 | MLP2 | MOAT-D | MRP3 | cMOAT2 ATP binding cassette subfamily C member 3 17q22 CV:PGCnp
DNM:McCarthy_2014
9368 SLC9A3R1 EBP50 | NHERF | NHERF-1 | NHERF1 | NPHLOP2 SLC9A3 regulator 1 17q25.1 DMG:Wockner_2014
DNM:Fromer_2014
GO_Annotation
Network
ION BALANCE
CompositeSet
5874 RAB27B C25KG RAB27B, member RAS oncogene family 18q21.2 CV:PGCnp EXOCYTOSIS
344 APOC2 APO-CII | APOC-II apolipoprotein C-II 19q13.2 CV:PGCnp
5997 RGS2 G0S8 regulator of G-protein signaling 2 1q31 CV:PGCnp
Network
PMID:cooccur
1116 CHI3L1 ASRT7 | CGP-39 | GP-39 | GP39 | HC-gp39 | HCGP-3P | YKL-40 | YKL40 | YYL-40 | hCGP-39 chitinase 3 like 1 1q32.1 Association
CV:GWASdb
CV:PGCnp
DMG:Wockner_2014
Expression
GR_Ng
GR_WM
PMID:cooccur
4811 NID1 NID nidogen 1 1q43 CV:GWASdb
CV:PGCnp
5740 PTGIS CYP8 | CYP8A1 | PGIS | PTGI prostaglandin I2 (prostacyclin) synthase 20q13.13 CV:GWAScat
CV:PGC128
CV:PGCnp
DNM:Ambalavanan_2016
9217 VAPB ALS8 | VAMP-B | VAP-B VAMP (vesicle-associated membrane protein)-associated protein B and C 20q13.33 CV:PGCnp
DMG:Jaffe_2016
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
CompositeSet
3417 IDH1 HEL-216 | HEL-S-26 | IDCD | IDH | IDP | IDPC | PICD isocitrate dehydrogenase 1 (NADP+) 2q33.3 CV:PGCnp
DEG:Zhao_2015
Expression
GSMA_IIA
GSMA_IIE
PMID:cooccur
CELL METABOLISM
Chromatin Remodeling Genes
50650 ARHGEF3 GEF3 | STA3 | XPLN Rho guanine nucleotide exchange factor 3 3 p14.3 CV:PGCnp
DMG:Jaffe_2016
10181 RBM5 G15 | H37 | LUCA15 | 5元人民币 RNA binding motif protein 5 3p21.3 CV:PGCnp Ascano FMRP targets
5806 PTX3 TNFAIP5 | TSG-14 pentraxin 3 3q25 PMID:cooccur
5217 PFN2 D3S1319E | PFL profilin 2 3q25.1 Network STRUCTURAL PLASTICITY
CompositeSet
604 BCL6 BCL5 | BCL6A | LAZ3 | ZBTB27 | ZNF51 B-cell CLL/lymphoma 6 3q27 CV:PGCnp
DMG:Jaffe_2016
347 APOD - apolipoprotein D 3q29 CV:PGCnp
PMID:cooccur
CompositeSet
6558 SLC12A2 BSC | BSC2 | NKCC1 | PPP1R141 solute carrier family 12 member 2 5q23.3 CV:PGCnp
GSMA_I
PMID:cooccur
6932 TCF7 TCF-1 transcription factor 7 (T-cell specific, HMG-box) 5q31.1 CV:PGCnp
DMG:Jaffe_2016
DMG:Wockner_2014
GSMA_I
PMID:cooccur
2729 GCLC GCL | GCS | GLCL | GLCLC glutamate-cysteine ligase catalytic subunit 6p12 CV:PGCnp
GO_Annotation
GSMA_IIE
PMID:cooccur
3304 HSPA1B HSP70-1B | HSP70-2 | HSP70.2 heat shock protein family A (Hsp70) member 1B 6p21.3 CV:PGCnp
DMG:Wockner_2014
PMID:cooccur
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
G2Cdb.humanNRC
3400 ID4 IDB4 | bHLHb27 inhibitor of DNA binding 4, HLH protein 6p22.3 CV:GWASdb
CV:PGCnp
DMG:Jaffe_2016
GO_Annotation
GSMA_I
6648 SOD2 IPOB | MNSOD | MVCD6 superoxide dismutase 2, mitochondrial 6q25.3 Association
CV:PGCnp
PMID:cooccur
G2Cdb.human_clathrin
G2Cdb.human_mitochondria
G2Cdb.human_Synaptosome
G2Cdb.humanPSD
G2Cdb.humanPSP
1364 CLDN4 CPE-R | CPER | CPETR | CPETR1 | WBSCR8 | hCPE-R claudin 4 7q11.23 CNV:YES
CV:PGCnp
GO_Annotation
5166 PDK4 - pyruvate dehydrogenase kinase 4 7q21.3 CV:PGCnp
DEG:Zhao_2015
DMG:Wockner_2014
Expression
5764 PTN HARP | HBGF8 | HBNF | NEGF1 pleiotrophin 7q33 CV:GWASdb
CV:PGCnp
DMG:Wockner_2014
GO_Annotation
Network
PMID:cooccur
Potential synaptic genes
6422 SFRP1 FRP | FRP-1 | FRP1 | FrzA | SARP2 secreted frizzled-related protein 1 8p11.21 Association
CV:PGCnp
PMID:cooccur
216 ALDH1A1 ALDC | ALDH-E1 | ALDH1 | ALDH11 | HEL-9 | HEL-S-53e | HEL12 | PUMB1 | RALDH1 aldehyde dehydrogenase 1 family member A1 9q21.13 CV:GWAScat
CV:GWASdb
CV:PGCnp
PMID:cooccur
G2Cdb.humanPSD
G2Cdb.humanPSP
1612 DAPK1 DAPK death-associated protein kinase 1 9q21.33 CV:PGCnp
DMG:Jaffe_2016
DMG:Nishioka_2013
DNM:McCarthy_2014
INTRACELLULAR SIGNAL TRANSDUCTION
CompositeSet
达内尔FMRP targets
Ascano FMRP targets
3934 LCN2 24p3 | MSFI | NGAL | p25 lipocalin 2 9q34 PMID:cooccur


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