Search results: The pahtwayp2163has 83 genes in the original annotation. Currently, there are 51 genes in SZGR 2.0 (with evidence in schizophrenia) that are present at this pathway.

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Gene ID Symbol Synonyms Official Full Name Location SZ group? Functional group?
7431 VIM CTRCT30 | HEL113 vimentin 10p13 CV:PGCnp
PMID:cooccur
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
CompositeSet
9397 NMT2 - N-myristoyltransferase 2 10p13 CV:PGCnp Ascano FMRP targets
133 ADM AM | PAMP adrenomedullin 11p15.4 DMG:Jaffe_2016
PMID:cooccur
51083 GAL ETL8 | GAL-GMAP | GALN | GLNN | GMAP galanin/GMAP prepropeptide 11q13.3 CV:GWASdb
CV:PGCnp
DMG:Nishioka_2013
GO_Annotation
PMID:cooccur
51026 GOLT1B CGI-141 | GCT2 | GOT1 | GOT1B | YMR292W golgi transport 1B 12p12.1 CV:PGCnp
586 BCAT1 BCATC | BCT1 | ECA39 | MECA39 | PNAS121 | PP18 branched chain amino acid transaminase 1 12p12.1 CV:PGCnp
DNM:Fromer_2014
GO_Annotation
CompositeSet
4948 OCA2 BEY | BEY1 | BEY2 | BOCA | D15S12 | EYCL | EYCL2 | EYCL3 | HCL3 | P | PED | SHEP1 OCA2 melanosomal transmembrane protein 15q CNV:YES
CV:PGCnp
DMG:Wockner_2014
2558 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit 15q12 CNV:YES
CV:PGCnp
GO_Annotation
PMID:cooccur
LIGAND GATED ION SIGNALING
Potential synaptic genes
1464 CSPG4 HMW-MAA | MCSP | MCSPG | MEL-CSPG | MSK16 | NG2 chondroitin sulfate proteoglycan 4 15q24.2 CV:PGCnp
DMG:Wockner_2014
DNM:Xu_2012
GO_Annotation
CompositeSet
597 BCL2A1 ACC-1 | ACC-2 | ACC1 | ACC2 | BCL2L5 | BFL1 | GRS | HBPA1 BCL2 related protein A1 15q24.3 CV:GWASdb
CV:PGCnp
51330 TNFRSF12A CD266 | FN14 | TWEAKR tumor necrosis factor receptor superfamily member 12A 16p13.3 DMG:Wockner_2014
GO_Annotation
28513 CDH19 CDH7 | CDH7L2 cadherin 19 18 q22.1 CV:GWASdb
CV:PGCnp
CELL ADHESION AND TRANSSYNAPTIC SIGNALING
3383 ICAM1 BB2 | CD54 | P3.58 intercellular adhesion molecule 1 19p13.2 CV:PGCnp
CV:PheWAS
DMG:Wockner_2014
DNM:McCarthy_2014
51129 ANGPTL4 ARP4 | FIAF | HARP | HFARP | NL2 | PGAR | TGQTL | UNQ171 | pp1158 angiopoietin like 4 19p13.3 CV:PGCnp
GO_Annotation
PMID:cooccur
84230 LRRC8C AD158 | FAD158 leucine-rich repeat containing 8 family member C 1p22.2 CV:PGCnp
DMG:Jaffe_2016
Expression
5321 PLA2G4A PLA2G4 | cPLA2 | cPLA2-alpha phospholipase A2 group IVA 1q31.1 Association
CV:PGCnp
GO_Annotation
GR_Ng
GR_WM
PMID:cooccur
G2Cdb.humanNRC
G2Cdb.humanPSP
9928 KIF14 MKS12 kinesin family member 14 1q32.1 CV:PGCnp
DNM:Fromer_2014
CompositeSet
5621 PRNP ASCR | AltPrP | CD230 | CJD | GSS | KURU | PRIP | PrP | PrP27-30 | PrP33-35C | PrPc | p27-30 prion protein 20p13 CV:PGCnp
DMG:Jaffe_2016
DMG:Nishioka_2013
DMG:vanEijk_2014
Network
PMID:cooccur
G2Cdb.humanPSD
G2Cdb.humanPSP
1522 CTSZ CTSX cathepsin Z 20q13.32 CV:PGCnp
DMG:vanEijk_2014
6285 S100B NEF | S100 | S100-B | S100beta S100 calcium binding protein B 21q22.3 Association
CV:PGCnp
GO_Annotation
Network
PMID:cooccur
G2Cdb.human_clathrin
G2Cdb.human_Synaptosome
G2Cdb.humanPSD
G2Cdb.humanPSP
3162 HMOX1 HMOX1D | HO-1 | HSP32 | bK286B10 heme oxygenase 1 22q13.1 CV:PGCnp
PMID:cooccur
56603 CYP26B1 CYP26A2 | P450RAI-2 | P450RAI2 | RHFCA cytochrome P450 family 26 subfamily B member 1 2p13.2 CV:GWAScat
CV:PGC128
CV:PGCnp
PMID:cooccur
7850 IL1R2 CD121b | CDw121b | IL-1R-2 | IL-1RT-2 | IL-1RT2 | IL1R2c | IL1RB interleukin 1 receptor type 2 2q12 CV:GWAScat
CV:GWASdb
CV:PGCnp
GSMA_I
64943 NT5DC2 - 5'-nucleotidase domain containing 2 3p21.1 CV:PGCnp
LK:YES
25907 TMEM158 BBP | RIS1 | p40BBP transmembrane protein 158 (gene/pseudogene) 3p21.3 CV:PGCnp
1618 DAZL DAZH |DAZL1 | DAZLA | SPGYLA deleted in azoospermia like 3p24.3 CV:PGCnp
DMG:Wockner_2014
GSMA_I
3269 HRH1 H1-R | H1R | HH1R | hisH1 histamine receptor H1 3p25 ADT:Sun_2012
Association
CV:GWASdb
CV:PGCnp
GR_COR
GR_WM
GSMA_I
PMID:cooccur
26577 PCOLCE2 PCPE2 procollagen C-endopeptidase enhancer 2 3q21-q24 CV:GWASdb
CV:PGCnp
5806 PTX3 TNFAIP5 | TSG-14 pentraxin 3 3q25 PMID:cooccur
10644 IGF2BP2 IMP-2 | IMP2 | VICKZ2 insulin like growth factor 2 mRNA binding protein 2 3q27.2 CV:PGCnp
PMID:cooccur
27284 SULT1B1 ST1B1 | ST1B2 | SULT1B2 sulfotransferase family 1B member 1 4q13.3 CV:PGCnp
DNM:Fromer_2014
GO_Annotation
CompositeSet
6715 SRD5A1 S5AR 1 steroid 5 alpha-reductase 1 5p15 CV:PGCnp
PMID:cooccur
56172 ANKH ANK | CCAL2 | CMDJ | CPPDD | HANK | MANK ANKH inorganic pyrophosphate transport regulator 5p15.1 CV:PGCnp
DMG:Nishioka_2013
1404 HAPLN1 CRT1 | CRTL1 hyaluronan and proteoglycan link protein 1 5q14.3 CV:PGCnp
PMID:cooccur
CELL ADHESION AND TRANSSYNAPTIC SIGNALING
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
2296 FOXC1 ARA | FKHL7 | FREAC-3 | FREAC3 | IGDA | IHG1 | IRID1 | RIEG3 forkhead box C1 6p25 CV:PGCnp
DMG:Jaffe_2016
GO_Annotation
GSMA_I
PMID:cooccur
5325 PLAGL1 LOT1 | ZAC | ZAC1 PLAG1 like zinc finger 1 6q24-q25 CV:PGCnp
DMG:Wockner_2014
6648 SOD2 IPOB | MNSOD | MVCD6 superoxide dismutase 2, mitochondrial 6q25.3 Association
CV:PGCnp
PMID:cooccur
G2Cdb.human_clathrin
G2Cdb.human_mitochondria
G2Cdb.human_Synaptosome
G2Cdb.humanPSD
G2Cdb.humanPSP
10643 IGF2BP3 CT98 | IMP-3 | IMP3 | KOC | KOC1 | VICKZ3 insulin like growth factor 2 mRNA binding protein 3 7p11 CV:PGCnp
DMG:Jaffe_2016
3569 IL6 BSF-2 | BSF2 | CDF | HGF | HSF | IFN-beta-2 | IFNB2 | IL-6 interleukin 6 7p21 CV:GWASdb
CV:PGCnp
PMID:cooccur
2770 GNAI1 Gi G protein subunit alpha i1 7q21 CV:PGCnp
Network
PMID:cooccur
CANABINOID
G-PROTEIN RELAY
SEROTONIN
Potential synaptic genes
813 CALU - calumenin 7q32.1 CV:PGCnp
DMG:Jaffe_2016
2138 EYA1 BOP | BOR | BOS1 | OFC1 EYA transcriptional coactivator and phosphatase 1 8q13.3 CV:GWASdb
CV:PGCnp
GO_Annotation
2171 FABP5 E-FABP | EFABP | KFABP | PA-FABP | PAFABP fatty acid binding protein 5 8q21.13 CV:GWASdb
CV:PGCnp
Expression
Network
PMID:cooccur
G2Cdb.humanNRC
G2Cdb.humanPSD
G2Cdb.humanPSP
4982 TNFRSF11B OCIF | OPG | PDB5 | TR1 tumor necrosis factor receptor superfamily member 11b 8q24 CV:PGCnp
CV:PheWAS
5168 ENPP2 ATX | ATX-X | AUTOTAXIN | LysoPLD | NPP2 | PD-IALPHA | PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 8 q24.1 CV:PGCnp
PMID:cooccur
4609 MYC MRTL | MYCC | bHLHe39 | c-Myc v-myc avian myelocytomatosis viral oncogene homolog 8 q24.21 CV:PGCnp
DMG:Jaffe_2016
Expression
Network
PMID:cooccur
85301 COL27A1 STLS collagen type XXVII alpha 1 9q32 CV:GWASdb
CV:PGCnp
DNM:Fromer_2014
Expression
CompositeSet
64855 FAM129B C9orf88 | MEG-3 | MINERVA | OC58 | bA356B19.6 family with sequence similarity 129 member B 9q34.13 CV:PGCnp
DMG:Wockner_2014
2824 GPM6B M6B glycoprotein M6B Xp22.2 CV:PGCnp
德G:Zhao_2015
GO_Annotation
CELL ADHESION AND TRANSSYNAPTIC SIGNALING
Potential synaptic genes
4478 MSN HEL70 moesin Xq11.1 GO_Annotation
Network
PMID:cooccur
CompositeSet
Potential synaptic genes
1947 EFNB1 CFND | CFNS | EFB1 | EFL3 | EPLG2 | Elk-L | LERK2 ephrin-B1 Xq12 CV:GWAScat
CV:PGC128
CV:PGCnp
GO_Annotation
Network


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