Search results: The pahtwayp2600has 75 genes in the original annotation. Currently, there are 51 genes in SZGR 2.0 (with evidence in schizophrenia) that are present at this pathway.

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Gene ID Symbol Synonyms Official Full Name Location SZ group? Functional group?
84640 USP38 HP43.8KD ubiquitin specific peptidase 38 - CV:PGCnp
DMG:vanEijk_2014
2869 GRK5 GPRK5 G protein-coupled receptor kinase 5 10q26.11 CV:PGCnp
DMG:Jaffe_2016
DMG:Nishioka_2013
DMG:Wockner_2014
PMID:cooccur
2346 FOLH1 FGCP | FOLH | GCP2 | GCPII | NAALAD1 | NAALAdase | PSM | PSMA | mGCP folate hydrolase (prostate-specific membrane antigen) 1 11p11.2 CV:PGCnp
PMID:cooccur
595 CCND1 BCL1 | D11S287E | PRAD1 | U21B31 cyclin D1 11q13 DMG:Jaffe_2016
Network
PMID:cooccur
923 CD6 TP120 CD6 molecule 11q13 CV:PGCnp
DMG:vanEijk_2014
6653 SORL1 C11orf32 | LR11 | LRP9 | SORLA | SorLA-1 | gp250 sortilin-related receptor, L(DLR class) A repeats containing 11q23.2-q24.2 CV:PGCnp
DMG:Montano_2016
GSMA_I
PMID:cooccur
CompositeSet
Darnell FMRP targets
8082 SSPN DAGA5 | KRAG | NSPN | SPN1 | SPN2 sarcospan 12p11.2 CV:PGCnp
DMG:Nishioka_2013
Expression
GO_Annotation
2904 GRIN2B EIEE27 | GluN2B | MRD6 | NMDAR2B | NR2B | hNR3 glutamate ionotropic receptor NMDA type subunit 2B 12p12 ADT:Sun_2012
Association
Core
CV:GWASdb
CV:PGCnp
DNM:Awadalla_2010
GO_Annotation
GR_COR
GR_Ng
GR_WM
Network
PMID:cooccur
LIGAND GATED ION SIGNALING
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
G2Cdb.human_PocklingtonH1
G2Cdb.human_TAP-PSD-95-CORE
G2Cdb.humanNRC
G2Cdb.humanPSD
G2Cdb.humanPSP
CompositeSet
Darnell FMRP targets
Potential synaptic genes
894 CCND2 KIAK0002 | MPPH3 cyclin D2 12p13 CV:PGCnp
DMG:Jaffe_2016
DMG:Wockner_2014
PMID:cooccur
22822 PHLDA1 DT1P1B11 | PHRIP | TDAG51 pleckstrin homology like domain family A member 1 12q15 CV:GWASdb
CV:PGCnp
PMID:cooccur
53981 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 14q31.1 CV:PGCnp
CV:PheWAS
DMG:Wockner_2014
12 SERPINA3 AACT | ACT | GIG24 | GIG25 serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3 14q32.1 CV:PGCnp
Expression
Network
PMID:cooccur
G2Cdb.humanNRC
G2Cdb.humanPSD
G2Cdb.humanPSP
6447 SCG5 7B2 | P7B2 | SGNE1 | SgV secretogranin V 15q13-q14 CNV:YES
CV:PGCnp
GO_Annotation
NEUROTROPHIN SIGNALING
27229 TUBGCP4 76P | GCP-4 | GCP4 | Grip76 | MCCRP3 tubulin gamma complex associated protein 4 15q15 CV:PGCnp
55623 THUMPD1 Tan1 THUMP domain containing 1 16p12.3 CV:PGCnp
GSMA_IIE
23042 PDXDC1 LP8165 pyridoxal-dependent decarboxylase domain containing 1 16p13.11 CV:PGCnp
GSMA_IIE
Ascano FMRP targets
5694 PSMB6 DELTA | LMPY | Y proteasome subunit beta 6 17p13 CV:PGCnp
DMG:Nishioka_2013
Expression
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
8165 AKAP1 AKAP | AKAP121 | AKAP149 | AKAP84 | D-AKAP1 | PPP1R43 | PRKA1 | SAKAP84 | TDRD17 A-kinase anchoring protein 1 17q22 CV:GWASdb
CV:PGCnp
DMG:Wockner_2014
124583 CANT1 DBQD | DBQD1 | SCAN-1 | SCAN1 | SHAPY calcium activated nucleotidase 1 17q25.3 CV:PGCnp
170463 SSBP4 - single stranded DNA binding protein 4 19p13.1 CV:PGCnp
DMG:Wockner_2014
7001 PRDX2 HEL-S-2a | NKEF-B | NKEFB | PRP | PRX2 | PRXII | PTX1 | TDPX1 | TPX1 | TSA peroxiredoxin 2 19p13.2 CV:PGCnp
DMG:Jaffe_2016
CELL METABOLISM
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
G2Cdb.human_clathrin
G2Cdb.human_Synaptosome
G2Cdb.human_TAP-PSD-95-CORE
G2Cdb.humanNRC
G2Cdb.humanPSD
G2Cdb.humanPSP
CompositeSet
587 BCAT2 BCAM | BCATM | BCT2 | PP18 branched chain amino acid transaminase 2 19q13 CV:PGCnp
GO_Annotation
390916 NUDT19 RP2 nudix hydrolase 19 19q13.11 CV:PGCnp
10487 CAP1 CAP | CAP1-PEN CAP, adenylate cyclase-associated protein 1 (yeast) 1p34.2 CV:PGCnp
PMID:cooccur
INTRACELLULAR SIGNAL TRANSDUCTION
8863 PER3 GIG13 period circadian clock 3 1p36.23 Association
CV:PGCnp
PMID:cooccur
2782 GNB1 - G protein subunit beta 1 1p36.33 CV:PGCnp
DMG:Jaffe_2016
DMG:Wockner_2014
Network
CANABINOID
DOPAMINE
G-PROTEIN RELAY
METABOTROPIC GLUTAMATE RECEPTOR
SEROTONIN
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-FULL
G2Cdb.human_BAYES-COLLINS-MOUSE-PSD-CONSENSUS
G2Cdb.human_clathrin
G2Cdb.human_Synaptosome
G2Cdb.humanNRC
G2Cdb.humanPSD
G2Cdb.humanPSP
CompositeSet
Darnell FMRP targets
223 ALDH9A1 ALDH4 | ALDH7 | ALDH9 | E3 | TMABADH aldehyde dehydrogenase 9 family member A1 1q23.1 CV:PGCnp
DMG:Nishioka_2013
GO_Annotation
PMID:cooccur
3765 KCNJ9 GIRK3 | KIR3.3 potassium voltage-gated channel subfamily J member 9 1q23.2 CV:PGCnp
DMG:Wockner_2014
GSMA_I
GSMA_IIA
Network
CANABINOID
EXCITABILITY
SEROTONIN
5451 POU2F1 OCT1 | OTF1 | oct-1B POU class 2 homeobox 1 1q24.2 CV:PGCnp
DMG:Wockner_2014
6004 RGS16 A28-RGS14 | A28-RGS14P | RGS-R regulator of G-protein signaling 16 1q25-q31 CV:PGCnp
Network
PMID:cooccur
64326 RFWD2 COP1 | RNF200 ring finger and WD repeat domain 2, E3 ubiquitin protein ligase 1q25.1-q25.2 CV:GWASdb
CV:PGCnp
DMG:Jaffe_2016
3756 KCNH1 EAG | EAG1 | Kv10.1 | TMBTS | ZLS1 | h-eag | hEAG1 potassium voltage-gated channel subfamily H member 1 1q32.2 CV:PGCnp
PMID:cooccur
CompositeSet
Darnell FMRP targets
6726 SRP9 ALURBP signal recognition particle 9kDa 1q42.12 CV:PGCnp
DMG:Nishioka_2013
22919 MAPRE1 EB1 microtubule associated protein RP/EB family member 1 20q11.1-q11.23 CV:GWASdb
CV:PGCnp
DMG:Wockner_2014
Network
79144 PPDPF C20orf149 | dJ697K14.9 | exdpf pancreatic progenitor cell differentiation and proliferation factor 20q13.33 CV:PGCnp
PMID:cooccur
116143 WDR92 - WD repeat domain 92 2p14 CV:PGCnp
DMG:Jaffe_2016
4528 MTIF2 - mitochondrial translational initiation factor 2 2p16.1 CV:PGCnp
DMG:Nishioka_2013
PMID:cooccur
51130 ASB3 ASB-3 ankyrin repeat and SOCS box containing 3 2p16.2 CV:GWASdb
CV:PGCnp
4867 NPHP1 JBTS4 | NPH1 | SLSN1 nephronophthisis 1 (juvenile) 2q13 CV:PGCnp
Expression
GR_Ng
GR_WM
GSMA_I
GSMA_IIA
11102 RPP14 HsHTD2 | P14 ribonuclease P/MRP 14kDa subunit 3p14.3 CV:PGCnp
6565 SLC15A2 PEPT2 solute carrier family 15 member 2 3q13.33 CV:PGCnp
Expression
54940 OCIAD1 ASRIJ | OCIA | TPA018 OCIA domain containing 1 4p11 CV:PGCnp
DMG:Jaffe_2016
401152 C4orf3 - chromosome 4 open reading frame 3 4q26 CV:PGCnp
DMG:Wockner_2014
60592 SCOC HRIHFB2072 | SCOCO | UNC-69 short coiled-coil protein 4q31.1 CV:PGCnp
DMG:Jaffe_2016
Network
5066 PAM PAL | PHM peptidylglycine alpha-amidating单氧酶 5q14-q21 CV:GWASdb
CV:PGCnp
Expression
GR_Ng
PMID:cooccur
501 ALDH7A1 ATQ1 | EPD | PDE aldehyde dehydrogenase 7 family member A1 5q31 CV:PGCnp
DMG:Jaffe_2016
GSMA_I
CompositeSet
6695 SPOCK1 SPOCK | TESTICAN | TIC1 sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 5q31.2 CV:GWASdb
CV:PGCnp
GO_Annotation
GSMA_I
6293 VPS52 ARE1 | SAC2 | SACM2L | dJ1033B10.5 VPS52, GARP complex subunit 6p21.3 CV:PGCnp
DMG:Jaffe_2016
DMG:Montano_2016
GSMA_I
G2Cdb.human_BAYES-COLLINS-HUMAN-PSD-CONSENSUS
CompositeSet
2739 GLO1 GLOD1 | GLYI | HEL-S-74 glyoxalase I 6p21.3-p21.1 CV:PGCnp
DEG:Sanders_2013
GSMA_I
GSMA_IIE
PMID:cooccur
CELL METABOLISM
7162 TPBG 5T4 | 5T4AG | M6P1 | WAIF1 trophoblast glycoprotein 6q14-q15 CV:PGCnp
DMG:Wockner_2014
6917 TCEA1 GTF2S | SII | TCEA | TF2S | TFIIS transcription elongation factor A1 8q11.2 CV:PGCnp
DMG:Jaffe_2016


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